Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 6.9e-51 203.8 109 100.0
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 8.8e-30 133.7 85 82.4
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 5.0e-17 91.3 100 57.0
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.5e-16 89.0 100 56.0
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 3.3e-16 88.6 101 47.5
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 4.3e-16 88.2 84 57.1
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 5.6e-16 87.8 105 53.3
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 5.6e-16 87.8 58 72.4
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 9.5e-16 87.0 92 56.5
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 1.2e-15 86.7 106 49.1
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 2.1e-15 85.9 76 56.6
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 2.1e-15 85.9 100 50.0
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 2.8e-15 85.5 86 51.2
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 3.6e-15 85.1 103 49.5
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 6.1e-15 84.3 94 53.2
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 6.1e-15 84.3 94 44.7
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 6.1e-15 84.3 94 43.6
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 6.1e-15 84.3 98 51.0
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.0e-14 83.6 100 55.0
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.0e-14 83.6 100 55.0
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 1.4e-14 83.2 91 51.6
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 1.8e-14 82.8 85 54.1
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 1.8e-14 82.8 91 49.5
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 1.8e-14 82.8 99 45.5
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 1.8e-14 82.8 95 47.4
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.3e-14 82.4 89 50.6
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 3.0e-14 82.0 100 51.0
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 3.0e-14 82.0 104 49.0
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 4.0e-14 81.6 91 52.7
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 4.0e-14 81.6 107 49.5
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 4.0e-14 81.6 107 49.5
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 4.0e-14 81.6 107 49.5
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 4.0e-14 81.6 79 55.7
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 5.2e-14 81.3 106 48.1
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 5.2e-14 81.3 64 62.5
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 5.2e-14 81.3 88 50.0
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 6.8e-14 80.9 82 56.1
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 8.9e-14 80.5 98 52.0
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 1.2e-13 80.1 90 54.4
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 1.2e-13 80.1 86 48.8
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 1.2e-13 80.1 107 48.6
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 1.5e-13 79.7 98 53.1
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 2.0e-13 79.3 91 47.3
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 2.0e-13 79.3 53 71.7
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 2.6e-13 79.0 93 50.5
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 2.6e-13 79.0 108 44.4
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 2.6e-13 79.0 89 50.6
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 3.4e-13 78.6 87 55.2
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 3.4e-13 78.6 90 52.2
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 5.8e-13 77.8 81 55.6
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 5.8e-13 77.8 82 48.8
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 9.8e-13 77.0 103 48.5
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 9.8e-13 77.0 78 57.7
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 9.8e-13 77.0 78 57.7
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 9.8e-13 77.0 101 50.5
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 9.8e-13 77.0 85 49.4
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 1.3e-12 76.6 85 51.8
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 1.3e-12 76.6 97 45.4
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 1.7e-12 76.3 98 50.0
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.7e-12 76.3 79 51.9
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.7e-12 76.3 79 51.9
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.7e-12 76.3 81 50.6
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 1.7e-12 76.3 88 47.7
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 2.2e-12 75.9 97 46.4
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 2.2e-12 75.9 87 49.4
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.2e-12 75.9 78 55.1
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 3.7e-12 75.1 57 63.2
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 3.7e-12 75.1 98 50.0
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 4.9e-12 74.7 98 49.0
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 4.9e-12 74.7 97 46.4
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 4.9e-12 74.7 97 46.4
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 4.9e-12 74.7 97 46.4
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 4.9e-12 74.7 101 44.6
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 6.4e-12 74.3 97 48.5
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 6.4e-12 74.3 113 44.2
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 6.4e-12 74.3 89 47.2
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 6.4e-12 74.3 101 45.5
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 8.3e-12 73.9 107 44.9
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.1e-11 73.6 89 46.1
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 1.1e-11 73.6 102 49.0
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 1.1e-11 73.6 75 50.7
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.1e-11 73.6 83 49.4
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 1.4e-11 73.2 86 50.0
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 1.4e-11 73.2 89 46.1
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 1.9e-11 72.8 91 44.0
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 2.4e-11 72.4 79 53.2
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 2.4e-11 72.4 110 46.4
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 3.2e-11 72.0 90 47.8
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 3.2e-11 72.0 98 50.0
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 3.2e-11 72.0 98 50.0
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 3.2e-11 72.0 100 44.0
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 3.2e-11 72.0 98 43.9
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 3.2e-11 72.0 101 42.6
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 3.2e-11 72.0 108 44.4
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 5.4e-11 71.2 66 56.1
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 7.0e-11 70.9 104 47.1
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 7.0e-11 70.9 92 45.7
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 1.2e-10 70.1 86 50.0
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.2e-10 70.1 90 52.2
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 1.2e-10 70.1 105 42.9
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 1.2e-10 70.1 85 49.4
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.2e-10 70.1 105 46.7
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 1.6e-10 69.7 95 44.2
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 1.6e-10 69.7 83 47.0
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 2.0e-10 69.3 78 55.1
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 2.0e-10 69.3 76 52.6
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 6.0e-10 67.8 87 47.1
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 6.0e-10 67.8 99 42.4
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 7.8e-10 67.4 66 54.5
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.0e-09 67.0 100 44.0
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 3.0e-09 65.5 100 40.0
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 5.0e-09 64.7 91 42.9
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 5.0e-09 64.7 37 75.7
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 8.6e-09 63.9 94 36.2
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 8.6e-09 63.9 94 36.2
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 1.1e-08 63.5 36 72.2
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.9e-08 62.8 91 40.7
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 2.5e-08 62.4 78 47.4
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 4.3e-08 61.6 39 69.2
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 4.3e-08 61.6 41 65.9
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 4.3e-08 61.6 69 52.2
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 7.3e-08 60.8 92 35.9
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 9.5e-08 60.5 94 35.1
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 9.5e-08 60.5 78 47.4
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.2e-07 60.1 39 69.2
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.2e-07 60.1 39 69.2
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 1.6e-07 59.7 38 68.4
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.6e-07 59.7 35 77.1
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 1.6e-07 59.7 56 53.6
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 1.6e-07 59.7 78 46.2
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 2.1e-07 59.3 100 41.0
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 2.8e-07 58.9 100 38.0
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 2.8e-07 58.9 94 42.6
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 4.7e-07 58.2 78 46.2
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 6.2e-07 57.8 63 52.4
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 6.2e-07 57.8 78 46.2
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 1.4e-06 56.6 38 73.7
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 2.3e-06 55.8 35 74.3
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.3e-06 55.8 91 42.9
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 3.1e-06 55.5 100 40.0
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 3.1e-06 55.5 42 66.7
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 4.0e-06 55.1 37 70.3
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 4.0e-06 55.1 81 46.9
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 4.0e-06 55.1 38 71.1
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 5.2e-06 54.7 97 37.1
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 6.8e-06 54.3 62 48.4
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 8.9e-06 53.9 97 37.1


User provided reference genes

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