Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 4.7e-302 1040.4 526 100.0
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 5.5e-170 601.7 523 64.2
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 2.8e-137 493.0 504 54.0
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 2.8e-137 493.0 493 56.4
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 2.8e-137 493.0 495 55.6
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 4.0e-136 489.2 414 62.8
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 1.7e-134 483.8 481 56.1
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 9.2e-133 478.0 461 57.3
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 2.7e-132 476.5 480 54.8
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 7.8e-132 474.9 366 65.6
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 1.0e-131 474.6 481 55.1
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 1.3e-131 474.2 483 56.3
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 5.1e-131 472.2 482 55.8
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 6.6e-131 471.9 464 56.2
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 8.6e-131 471.5 451 57.2
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 7.3e-130 468.4 335 71.6
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 7.3e-130 468.4 467 56.3
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 7.3e-130 468.4 482 54.6
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 9.5e-130 468.0 562 48.2
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 1.2e-129 467.6 462 56.1
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 1.2e-129 467.6 514 51.9
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 1.6e-129 467.2 467 57.0
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 1.6e-129 467.2 471 55.0
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 2.8e-129 466.5 335 69.0
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 2.8e-129 466.5 366 65.6
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 3.6e-129 466.1 482 54.8
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 4.7e-129 465.7 466 56.4
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 6.2e-129 465.3 512 52.7
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 6.2e-129 465.3 352 67.0
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 6.2e-129 465.3 352 66.8
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 8.1e-129 464.9 488 54.5
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 1.1e-128 464.5 496 53.4
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 3.1e-128 463.0 495 54.1
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 3.1e-128 463.0 494 53.8
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 6.8e-128 461.8 343 67.6
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.2e-127 461.1 352 66.5
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.2e-127 461.1 541 51.6
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 1.2e-127 461.1 409 60.1
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 1.2e-127 461.1 409 59.9
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 2.0e-127 460.3 493 52.7
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.6e-127 459.9 572 48.8
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 3.4e-127 459.5 495 51.7
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 4.4e-127 459.1 341 67.2
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 4.4e-127 459.1 485 54.0
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 5.8e-127 458.8 346 66.8
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 7.6e-127 458.4 354 65.8
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 9.9e-127 458.0 396 61.4
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 1.7e-126 457.2 468 55.3
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 2.2e-126 456.8 418 58.9
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 2.2e-126 456.8 360 63.9
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 2.9e-126 456.4 501 52.5
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 8.4e-126 454.9 350 66.9
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 1.1e-125 454.5 352 65.9
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 1.1e-125 454.5 462 55.4
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 1.4e-125 454.1 491 51.7
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 1.4e-125 454.1 502 52.6
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 2.4e-125 453.4 352 65.6
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 3.2e-125 453.0 466 55.2
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 7.1e-125 451.8 497 51.9
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 1.6e-124 450.7 515 50.1
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 2.3e-123 446.8 413 58.6
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 3.0e-123 446.4 402 59.2
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 3.9e-123 446.0 468 53.8
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 8.6e-123 444.9 324 70.4
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 1.5e-122 444.1 433 57.7
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 2.5e-122 443.4 476 54.0
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 3.6e-121 439.5 353 62.9
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 4.7e-121 439.1 352 63.6
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 6.2e-121 438.7 503 51.1
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 1.1e-120 438.0 301 73.1
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 1.1e-120 438.0 418 56.7
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 1.4e-120 437.6 476 52.5
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 1.4e-120 437.6 452 54.2
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 1.8e-120 437.2 388 58.8
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 2.4e-120 436.8 326 65.3
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 4.0e-120 436.0 518 49.6
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 5.2e-120 435.6 523 50.5
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 4.4e-119 432.6 460 53.5
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 7.6e-119 431.8 490 52.4
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 6.4e-118 428.7 460 54.6
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 6.4e-118 428.7 460 54.6
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 1.4e-117 427.6 420 56.0
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 1.4e-117 427.6 485 50.7
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 5.4e-117 425.6 472 51.9
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 2.1e-116 423.7 439 55.1
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 1.7e-115 420.6 546 47.1
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 2.5e-114 416.8 362 59.9
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 9.6e-114 414.8 560 47.3
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 4.4e-111 406.0 286 73.1
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 9.9e-111 404.8 312 66.7
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 1.3e-107 394.4 339 59.3
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 8.1e-105 385.2 494 47.4
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 4.9e-102 375.9 282 69.1
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 4.9e-102 375.9 282 69.1
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 3.2e-101 373.2 282 68.4
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 5.5e-101 372.5 506 46.8
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 1.2e-92 344.7 269 66.9
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 9.7e-74 282.0 292 51.0
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 4.8e-73 279.6 478 37.7
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 2.0e-71 274.2 175 77.7
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 7.7e-71 272.3 290 49.3
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 4.8e-65 253.1 276 50.0
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 1.1e-61 241.9 224 60.3
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 1.0e-54 218.8 184 60.9
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 1.2e-50 205.3 164 67.1
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 7.7e-47 192.6 299 38.5
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 1.7e-46 191.4 301 40.2
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 3.8e-46 190.3 208 53.4
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 2.3e-43 181.0 298 38.3
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 2.0e-39 167.9 286 38.5
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 7.5e-34 149.4 152 50.7
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 2.7e-31 141.0 284 37.7
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 6.8e-19 99.8 219 32.4
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 5.8e-18 96.7 88 54.5
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 1.2e-15 89.0 83 49.4
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 1.2e-15 89.0 83 49.4
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 2.1e-15 88.2 83 48.2
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 1.0e-14 85.9 144 38.2
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 6.6e-14 83.2 71 54.9
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 6.6e-14 83.2 239 28.9
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 9.5e-13 79.3 136 36.0
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 3.6e-12 77.4 56 60.7
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 3.6e-12 77.4 56 60.7
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 4.7e-12 77.0 136 35.3
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 3.4e-10 70.9 63 54.0
Atru.chr3.1215 Acer truncatum HOM05D007191 ORTHO05D009370 2.1e-07 61.6 211 28.4
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 2.1e-07 61.6 196 31.1
BcaB07g33268 Brassica carinata HOM05D005801 ORTHO05D016715 2.7e-07 61.2 54 55.6
BcaB07g33439 Brassica carinata HOM05D005801 ORTHO05D016715 2.7e-07 61.2 54 55.6
CDE04G1458 Ceratophyllum demersum HOM05D007191 ORTHO05D009370 3.5e-07 60.8 176 31.2
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 4.6e-07 60.5 194 30.4
CANSAT01G2982 Cannabis sativa HOM05D007191 ORTHO05D009370 1.0e-06 59.3 197 29.9
Lsat_1_v5_gn_4_142441 Lactuca sativa HOM05D007191 ORTHO05D009370 1.0e-06 59.3 186 30.1
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 2.3e-06 58.2 183 30.1
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 2.3e-06 58.2 198 31.3
Actinidia25299 Actinidia chinensis HOM05D007191 ORTHO05D009370 6.6e-06 56.6 187 29.4
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 8.6e-06 56.2 183 24.0


User provided reference genes

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