Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 4.5e-197 691.0 345 100.0
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.8e-177 625.9 323 96.6
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 4.3e-131 471.9 331 73.4
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 7.6e-128 461.1 318 73.9
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 2.2e-127 459.5 274 79.9
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 7.9e-125 451.1 299 75.6
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 7.9e-125 451.1 296 75.7
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 2.8e-122 442.6 274 78.8
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 5.3e-121 438.3 323 70.3
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 1.5e-120 436.8 293 73.0
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 2.6e-120 436.0 274 76.3
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 5.9e-120 434.9 316 69.6
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 5.9e-120 434.9 274 75.9
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 1.3e-119 433.7 290 73.4
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.2e-119 433.0 274 75.5
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 6.5e-119 431.4 319 69.0
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 1.1e-118 430.6 308 70.5
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 2.5e-118 429.5 272 76.1
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 1.6e-117 426.8 274 76.3
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 1.6e-117 426.8 323 69.0
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 2.7e-117 426.0 273 75.5
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 4.6e-117 425.2 308 70.5
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 4.6e-117 425.2 297 70.4
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 1.0e-116 424.1 308 68.5
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 1.8e-116 423.3 275 75.6
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 3.9e-116 422.2 314 69.1
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 2.0e-115 419.9 314 66.6
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 2.6e-115 419.5 317 68.1
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 3.3e-115 419.1 325 66.2
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 4.4e-115 418.7 287 71.8
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 1.3e-114 417.2 293 70.3
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 1.7e-114 416.8 272 74.6
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 1.7e-114 416.8 272 74.6
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 1.7e-114 416.8 288 72.2
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 1.7e-114 416.8 287 71.4
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 3.7e-114 415.6 273 72.9
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 8.2e-114 414.5 272 74.3
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 8.2e-114 414.5 272 74.3
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 3.1e-113 412.5 273 72.2
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.5e-112 410.2 277 73.6
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 3.4e-112 409.1 317 64.7
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 1.4e-110 403.7 288 67.7
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 3.2e-110 402.5 296 66.9
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 2.1e-109 399.8 296 69.3
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 6.1e-109 398.3 273 71.4
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 7.9e-109 397.9 271 69.7
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 1.0e-108 397.5 317 63.7
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 1.4e-108 397.1 274 72.3
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 8.8e-108 394.4 321 64.8
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 8.8e-108 394.4 317 62.1
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 8.8e-108 394.4 315 65.7
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 1.1e-107 394.0 255 73.7
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.1e-107 394.0 273 71.1
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 2.6e-107 392.9 281 69.4
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 3.3e-107 392.5 274 71.2
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 3.3e-107 392.5 302 65.6
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 4.4e-107 392.1 294 67.7
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 9.7e-107 391.0 321 63.9
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 1.7e-106 390.2 275 72.0
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 3.7e-106 389.0 318 63.5
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 3.7e-106 389.0 273 70.7
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 1.8e-105 386.7 274 69.7
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 3.1e-105 386.0 273 70.3
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 3.1e-105 386.0 274 69.3
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 5.3e-105 385.2 318 63.5
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 5.3e-105 385.2 322 64.3
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 7.0e-105 384.8 317 64.0
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 7.0e-105 384.8 246 76.4
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 2.6e-104 382.9 245 75.5
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 3.5e-104 382.5 274 70.1
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 5.9e-104 381.7 275 68.0
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 7.7e-104 381.3 213 84.0
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 1.3e-103 380.6 241 75.5
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 3.8e-103 379.0 290 66.9
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 1.1e-102 377.5 306 64.1
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 1.9e-102 376.7 214 80.8
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 2.5e-102 376.3 211 83.9
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 5.5e-102 375.2 213 83.1
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 2.7e-101 372.9 210 83.3
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 3.6e-101 372.5 214 82.2
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 6.1e-101 371.7 219 78.1
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 5.7e-99 365.2 281 68.0
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 2.8e-98 362.8 276 67.4
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 3.8e-95 352.4 299 65.2
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 4.2e-94 349.0 234 74.4
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 6.8e-92 341.7 335 57.0
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 3.4e-91 339.3 245 66.1
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 1.4e-89 334.0 277 63.5
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 1.6e-88 330.5 194 80.9
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 4.5e-88 328.9 237 67.5
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.5e-86 323.2 231 67.1
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 3.2e-86 322.8 208 76.4
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 3.6e-85 319.3 278 59.4
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 6.1e-85 318.5 280 58.9
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 6.8e-84 315.1 220 70.9
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 9.8e-83 311.2 354 50.3
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 1.2e-75 287.7 431 41.8
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 1.5e-75 287.3 215 62.8
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 4.6e-72 275.8 285 51.6
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 3.3e-70 269.6 279 51.3
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 3.6e-69 266.2 257 56.8
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 1.9e-65 253.8 154 77.9
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 7.0e-65 251.9 224 57.1
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 3.9e-63 246.1 224 58.9
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 1.6e-61 240.7 212 61.3
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 9.9e-59 231.5 217 57.1
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 1.4e-57 227.6 119 83.2
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 3.3e-54 216.5 251 51.4
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 7.3e-54 215.3 196 53.6
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 9.5e-54 214.9 143 71.3
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 3.6e-53 213.0 241 54.4
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.4e-49 200.3 215 53.5
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 2.1e-29 134.0 165 39.4
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.8e-28 131.0 111 62.2
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 6.9e-28 129.0 84 72.6
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 1.7e-26 124.4 62 90.3
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 2.9e-26 123.6 97 68.0
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 8.4e-26 122.1 145 50.3
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.5e-19 101.3 104 54.8
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 2.6e-11 73.9 43 83.7
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.9e-09 67.8 76 50.0
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.9e-09 67.8 76 50.0
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.9e-06 57.8 122 36.1


User provided reference genes

Program Settings