Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 5.5e-273 943.7 488 100.0
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 7.1e-196 687.6 593 66.9
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 3.9e-109 399.4 607 41.7
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 8.3e-104 381.7 601 41.1
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 4.3e-100 369.4 605 40.8
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 5.6e-100 369.0 602 40.4
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 2.3e-98 363.6 610 39.7
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 5.2e-98 362.5 603 40.0
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 6.8e-98 362.1 600 40.2
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 2.6e-97 360.1 621 39.8
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 1.7e-96 357.5 608 39.6
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 6.4e-96 355.5 606 40.3
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 2.4e-95 353.6 621 39.5
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 2.7e-94 350.1 603 39.5
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 8.6e-93 345.1 607 40.2
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 3.3e-92 343.2 606 38.1
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 7.3e-92 342.0 598 40.1
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 1.2e-91 341.3 604 38.6
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 8.1e-91 338.6 613 38.8
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.8e-90 337.4 604 40.6
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 1.8e-90 337.4 609 39.6
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 3.1e-90 336.7 632 38.0
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 5.2e-90 335.9 614 38.1
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 6.9e-90 335.5 611 38.8
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 6.9e-90 335.5 616 38.1
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.2e-89 334.7 610 39.2
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.5e-89 334.3 603 38.5
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.0e-89 334.0 603 38.6
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 2.0e-89 334.0 606 38.1
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 5.8e-89 332.4 621 37.5
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.3e-88 331.3 609 37.9
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.2e-88 330.5 590 39.0
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.4e-87 327.8 609 37.6
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 1.4e-87 327.8 608 38.2
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 1.4e-87 327.8 617 38.1
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.9e-87 327.4 602 38.0
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 1.9e-87 327.4 591 39.3
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 7.1e-87 325.5 609 38.1
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 7.1e-87 325.5 612 37.1
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 9.3e-87 325.1 613 38.5
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 1.2e-86 324.7 608 37.8
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 7.8e-86 322.0 620 37.3
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 1.7e-85 320.9 573 39.1
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 3.0e-85 320.1 617 37.1
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 1.3e-83 314.7 607 37.1
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.1e-83 313.9 594 37.7
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 2.1e-83 313.9 594 37.7
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 1.1e-82 311.6 616 37.0
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 1.8e-82 310.8 556 39.7
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 6.9e-82 308.9 618 37.2
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 6.9e-82 308.9 591 37.6
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 9.0e-82 308.5 608 36.8
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 1.2e-81 308.1 610 37.2
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 3.4e-81 306.6 598 38.1
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 3.4e-81 306.6 611 37.0
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 1.3e-80 304.7 638 36.1
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 1.7e-80 304.3 647 35.9
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 6.4e-80 302.4 657 34.1
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 1.1e-79 301.6 603 36.8
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 1.4e-79 301.2 624 36.7
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 2.1e-78 297.4 586 37.5
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 3.5e-78 296.6 610 35.4
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 6.0e-78 295.8 596 37.2
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 1.3e-77 294.7 524 38.2
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.3e-77 293.9 593 36.6
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 5.1e-77 292.7 606 36.6
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 3.3e-76 290.0 593 36.4
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 2.1e-75 287.3 584 36.6
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 1.4e-74 284.6 586 36.0
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.4e-74 284.6 561 37.4
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 1.4e-74 284.6 604 36.3
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 1.8e-74 284.3 595 36.1
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 6.9e-74 282.3 664 35.1
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.3e-72 278.1 593 35.9
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 2.2e-72 277.3 588 37.4
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 3.8e-72 276.6 623 35.0
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 3.2e-71 273.5 549 39.5
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 1.6e-70 271.2 598 38.0
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 3.5e-70 270.0 541 37.2
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 7.9e-70 268.9 475 38.1
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 7.9e-70 268.9 571 35.6
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.3e-69 268.1 643 34.5
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 5.1e-69 266.2 583 37.2
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 2.1e-67 260.8 458 40.0
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 2.4e-66 257.3 456 40.1
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 3.1e-66 256.9 697 32.9
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 6.9e-66 255.8 611 33.6
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 1.2e-65 255.0 168 71.4
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 2.0e-65 254.2 594 34.7
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 2.6e-65 253.8 334 45.2
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 2.6e-65 253.8 584 33.4
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 1.0e-64 251.9 560 36.4
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 2.9e-64 250.4 149 79.9
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.8e-64 250.0 147 80.3
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 6.5e-64 249.2 457 39.2
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 8.4e-64 248.8 149 79.2
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 1.9e-63 247.7 272 53.3
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 4.2e-63 246.5 582 36.4
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 1.5e-60 238.0 198 63.6
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 7.4e-60 235.7 534 35.2
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 9.6e-60 235.3 437 39.4
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 1.3e-59 235.0 435 39.3
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 2.1e-59 234.2 147 75.5
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 8.2e-59 232.3 147 74.1
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 2.4e-58 230.7 439 38.7
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 2.4e-58 230.7 445 38.0
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 5.3e-58 229.6 155 70.3
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 1.5e-57 228.0 195 61.5
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.5e-57 228.0 133 78.2
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 5.9e-57 226.1 697 29.8
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 1.3e-56 224.9 230 54.8
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 2.2e-56 224.2 746 29.8
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 2.9e-56 223.8 295 47.1
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 3.8e-56 223.4 281 46.6
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 8.5e-56 222.2 327 44.0
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 1.1e-55 221.9 712 29.6
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 4.2e-55 219.9 147 72.1
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 7.2e-55 219.2 697 30.1
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 2.1e-54 217.6 582 33.5
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 2.7e-54 217.2 598 34.3
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 3.6e-54 216.9 584 33.9
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 5.1e-53 213.0 506 34.4
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 6.7e-53 212.6 134 74.6
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.9e-52 211.1 430 38.4
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 9.7e-52 208.8 165 58.8
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 1.5e-49 201.4 133 67.7
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 7.7e-49 199.1 562 33.1
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.9e-47 194.5 125 73.6
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 7.4e-44 182.6 260 42.7
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 9.7e-44 182.2 152 57.2
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 1.4e-42 178.3 128 66.4
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.2e-41 175.3 213 46.5
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 7.7e-41 172.6 152 54.6
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 8.5e-40 169.1 258 42.2
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 1.1e-39 168.7 355 35.8
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 7.2e-39 166.0 479 28.6
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 8.8e-37 159.1 85 82.4
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 3.3e-36 157.1 86 83.7
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 5.7e-36 156.4 88 81.8
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.7e-35 154.8 257 40.1
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 2.8e-35 154.1 355 33.8
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.2e-33 148.7 196 42.9
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.7e-32 144.8 332 34.9
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 3.2e-31 140.6 364 32.7
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 1.4e-29 135.2 336 33.3
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 6.7e-29 132.9 353 32.0
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 3.3e-28 130.6 66 86.4
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 4.1e-26 123.6 66 81.8
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 1.7e-24 118.2 340 31.2
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 2.2e-24 117.9 197 38.1
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 8.5e-24 115.9 337 33.8
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 1.1e-23 115.5 181 37.0
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 3.0e-21 107.5 368 28.3
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.2e-20 105.5 53 92.5
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 1.3e-19 102.1 264 32.6
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 9.1e-18 95.9 367 29.4
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 5.0e-16 90.1 105 42.9
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.0e-13 82.4 61 65.6
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 4.0e-13 80.5 94 44.7
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 6.8e-13 79.7 349 30.1
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 2.8e-11 74.3 52 69.2
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 4.9e-11 73.6 561 26.4
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 6.3e-11 73.2 34 88.2
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 1.1e-10 72.4 69 55.1
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.1e-10 72.4 366 24.9
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 3.1e-10 70.9 63 58.7
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.3e-08 64.7 47 66.0
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 3.8e-08 63.9 32 75.0
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 5.0e-08 63.5 47 66.0
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 3.3e-07 60.8 34 73.5
arahy.Tifrunner.gnm1.ann1.0536J9 Arachis hypogaea HOM05D000340 ORTHO05D000677 4.7e-06 57.0 38 71.1
Cfa001622 Carpinus fangiana HOM05D003684 ORTHO05D125656 6.1e-06 56.6 153 27.5


User provided reference genes

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