Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 2.1e-280 968.4 495 100.0
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 1.4e-207 726.5 487 75.6
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 4.1e-207 724.9 489 72.4
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 2.9e-205 718.8 494 72.7
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 8.5e-205 717.2 498 74.1
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.2e-203 713.4 487 72.1
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 1.6e-203 713.0 496 72.6
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 4.7e-203 711.4 488 72.5
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 7.9e-203 710.7 490 71.6
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 2.3e-202 709.1 491 71.3
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 2.3e-202 709.1 489 72.0
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 3.0e-202 708.8 491 71.7
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 7.4e-201 704.1 488 71.7
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 2.2e-200 702.6 490 71.0
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 6.3e-200 701.0 494 69.4
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.8e-199 699.5 491 71.7
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 2.4e-199 699.1 490 70.8
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 3.1e-199 698.7 489 71.4
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 3.1e-199 698.7 483 71.4
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 4.1e-199 698.4 495 71.3
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.0e-199 697.6 482 71.2
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.2e-198 696.8 485 71.1
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.0e-198 696.0 482 71.0
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 2.0e-198 696.0 485 69.9
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-197 693.7 479 71.2
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.7e-197 693.0 494 69.2
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 5.0e-197 691.4 486 70.2
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.5e-196 689.9 489 69.1
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 3.2e-196 688.7 484 70.0
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 3.2e-196 688.7 496 70.2
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 3.2e-196 688.7 489 68.7
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 4.2e-196 688.3 494 68.8
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 4.2e-196 688.3 490 70.4
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 5.5e-196 688.0 495 70.1
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 5.5e-196 688.0 495 70.1
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 5.5e-196 688.0 484 69.4
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 5.5e-196 688.0 491 68.6
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 1.6e-195 686.4 487 70.8
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 1.6e-195 686.4 487 69.6
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.6e-195 685.3 491 69.5
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 3.0e-194 682.2 510 67.3
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 4.0e-194 681.8 496 67.5
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 1.2e-193 680.2 496 67.3
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 1.5e-193 679.9 490 67.6
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.5e-193 679.9 491 68.4
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 2.6e-193 679.1 490 68.2
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 5.7e-193 677.9 487 69.0
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 7.5e-193 677.6 488 69.1
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 9.7e-193 677.2 487 67.6
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 1.7e-192 676.4 485 69.3
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 4.8e-192 674.9 497 67.4
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 8.2e-192 674.1 499 66.9
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 1.4e-191 673.3 527 66.8
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 3.1e-191 672.2 536 64.6
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 5.3e-191 671.4 490 67.3
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 7.0e-191 671.0 497 66.6
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 7.0e-191 671.0 486 67.7
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.2e-190 670.2 490 67.3
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 1.6e-190 669.8 486 67.3
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 1.6e-190 669.8 490 67.3
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 1.6e-190 669.8 494 67.2
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 2.0e-190 669.5 490 66.7
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 2.0e-190 669.5 483 67.5
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 2.0e-190 669.5 489 67.3
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 3.5e-190 668.7 490 67.1
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 4.5e-190 668.3 486 67.3
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 5.9e-190 667.9 486 66.9
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 7.7e-190 667.5 492 67.3
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 7.7e-190 667.5 491 67.0
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 7.7e-190 667.5 491 66.6
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.0e-189 667.2 493 66.5
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 1.0e-189 667.2 486 66.9
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 1.0e-189 667.2 486 66.9
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.3e-189 666.8 486 67.7
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 1.3e-189 666.8 489 68.3
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 1.7e-189 666.4 494 67.4
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 2.9e-189 665.6 486 67.1
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 5.0e-189 664.8 486 67.3
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 8.5e-189 664.1 486 66.9
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 8.5e-189 664.1 484 67.4
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 8.5e-189 664.1 486 66.9
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.9e-188 662.9 486 67.1
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.2e-188 662.1 486 67.7
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 4.2e-188 661.8 492 66.7
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.2e-187 660.2 486 67.5
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 2.7e-187 659.1 497 66.0
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 2.7e-187 659.1 498 67.1
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 4.7e-187 658.3 484 67.6
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 4.7e-187 658.3 488 66.0
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.4e-186 656.8 486 66.3
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.8e-186 656.4 490 66.1
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.3e-186 656.0 486 66.7
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 5.2e-186 654.8 503 65.2
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.2e-185 653.7 493 65.5
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 2.0e-185 652.9 493 65.5
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 4.4e-185 651.7 498 66.3
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.4e-183 646.7 490 65.5
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 1.4e-183 646.7 491 65.0
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.4e-183 646.7 492 65.9
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.4e-183 646.7 492 65.9
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 5.4e-183 644.8 486 66.0
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 1.3e-181 640.2 480 66.7
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.3e-181 639.4 488 63.7
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 5.0e-181 638.3 485 66.2
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 5.5e-180 634.8 503 62.8
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 6.1e-179 631.3 491 64.8
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.3e-178 629.4 501 63.5
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 3.0e-178 629.0 491 64.6
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 1.5e-177 626.7 456 68.0
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 1.7e-176 623.2 481 65.5
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.1e-175 620.5 488 63.1
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.8e-175 619.8 493 63.3
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 1.0e-173 614.0 513 61.2
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 6.8e-170 601.3 582 53.8
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 1.2e-169 600.5 519 59.3
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 3.4e-169 599.0 571 56.9
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 3.7e-168 595.5 489 63.6
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 2.4e-167 592.8 492 60.6
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 7.8e-166 587.8 464 62.9
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.1e-164 583.9 497 60.8
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 1.1e-162 577.4 489 60.9
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 5.2e-162 575.1 489 60.3
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 1.9e-159 566.6 460 60.2
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 7.0e-159 564.7 489 58.5
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.6e-158 562.0 398 70.1
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.2e-153 547.4 502 55.8
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 3.0e-149 532.7 504 57.3
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 1.6e-147 526.9 493 55.2
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 4.1e-143 512.3 360 72.8
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.5e-140 503.8 395 65.1
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 1.9e-140 503.4 384 67.4
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.4e-135 487.3 392 65.6
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.0e-133 481.1 357 67.5
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.7e-133 478.0 342 68.7
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 2.1e-131 473.4 541 49.9
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 9.3e-127 458.0 394 60.7
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 2.8e-123 446.4 362 61.9
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 8.4e-120 434.9 468 49.6
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 2.7e-118 429.9 363 61.2
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.0e-113 413.7 305 65.2
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.7e-110 403.3 400 56.2
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 1.0e-109 401.4 303 64.0
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.1e-109 399.1 285 70.2
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-108 397.9 274 70.1
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 1.9e-103 380.6 277 69.3
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.9e-79 300.8 471 38.0
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 2.3e-77 293.9 235 64.7
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 3.5e-73 280.0 254 61.4
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.2e-72 277.3 188 69.1
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.1e-66 258.5 164 76.2
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 5.4e-66 256.1 200 64.0
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 1.0e-61 241.9 207 65.2
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 9.5e-55 218.8 233 49.4
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 5.8e-52 209.5 133 75.2
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 8.3e-51 205.7 134 73.9
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 9.2e-50 202.2 260 42.7
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 4.7e-46 189.9 126 68.3
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 8.9e-45 185.7 133 68.4
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 2.4e-42 177.6 153 64.1
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 2.4e-42 177.6 289 40.8
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 3.3e-39 167.2 118 68.6
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.6e-38 164.9 105 78.1
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 1.2e-33 148.7 216 42.1
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 3.5e-33 147.1 91 70.3
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 3.5e-33 147.1 91 70.3
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 8.6e-32 142.5 105 68.6
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 1.7e-24 118.2 63 84.1
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 2.8e-22 110.9 66 80.3
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 8.1e-22 109.4 98 58.2
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 6.9e-21 106.3 63 77.8
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 4.4e-20 103.6 67 71.6
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 2.2e-19 101.3 68 70.6
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 3.8e-19 100.5 191 36.6
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 3.2e-18 97.4 65 73.8
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 2.3e-16 91.3 100 49.0
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 7.3e-15 86.3 65 61.5
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 6.2e-14 83.2 65 58.5
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 6.2e-14 83.2 65 58.5
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 4.9e-11 73.6 77 49.4
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 8.4e-11 72.8 46 67.4
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 5.6e-07 60.1 32 81.2


User provided reference genes

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