Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 6.0e-49 197.2 100 100.0
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.8e-38 161.8 100 74.0
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.1e-18 94.0 95 50.5
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.1e-18 94.0 95 50.5
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.1e-18 94.0 95 50.5
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.1e-18 94.0 95 50.5
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.3e-16 89.7 98 48.0
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 3.0e-16 88.6 91 49.5
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 1.1e-15 86.7 91 48.4
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 9.6e-15 83.6 89 48.3
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 9.6e-15 83.6 98 42.9
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 9.6e-15 83.6 94 44.7
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.3e-14 83.2 93 44.1
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.6e-14 82.8 98 45.9
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 2.1e-14 82.4 95 44.2
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 2.1e-14 82.4 101 43.6
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.7e-14 81.6 91 45.1
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 4.8e-14 81.3 93 43.0
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 6.2e-14 80.9 89 48.3
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.1e-13 80.1 92 42.4
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 1.1e-13 80.1 101 44.6
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.1e-13 80.1 95 43.2
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.1e-13 80.1 95 43.2
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 1.1e-13 80.1 95 43.2
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.1e-13 80.1 98 41.8
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.4e-13 79.7 95 45.3
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.8e-13 79.3 89 44.9
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 1.8e-13 79.3 87 46.0
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.8e-13 79.3 90 45.6
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 1.8e-13 79.3 92 44.6
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.4e-13 79.0 89 46.1
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 2.4e-13 79.0 101 42.6
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 2.4e-13 79.0 99 42.4
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 3.1e-13 78.6 92 44.6
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.1e-13 78.6 99 39.4
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 3.1e-13 78.6 86 46.5
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 3.1e-13 78.6 99 40.4
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 4.0e-13 78.2 94 42.6
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.0e-13 78.2 99 39.4
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 4.0e-13 78.2 104 45.2
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 4.0e-13 78.2 91 44.0
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.0e-13 78.2 95 45.3
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 5.3e-13 77.8 95 43.2
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 5.3e-13 77.8 93 40.9
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 6.9e-13 77.4 99 39.4
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 6.9e-13 77.4 91 46.2
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.2e-12 76.6 93 44.1
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 1.2e-12 76.6 99 43.4
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.2e-12 76.6 96 44.8
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.5e-12 76.3 95 44.2
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 2.0e-12 75.9 97 39.2
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 2.0e-12 75.9 98 41.8
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 2.6e-12 75.5 95 43.2
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.4e-12 75.1 95 42.1
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 3.4e-12 75.1 100 42.0
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 4.5e-12 74.7 95 40.0
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 5.8e-12 74.3 91 41.8
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 5.8e-12 74.3 100 44.0
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 5.8e-12 74.3 89 42.7
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 5.8e-12 74.3 98 42.9
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 5.8e-12 74.3 89 41.6
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 7.6e-12 73.9 91 40.7
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 7.6e-12 73.9 97 43.3
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 7.6e-12 73.9 98 38.8
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 7.6e-12 73.9 89 42.7
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 1.0e-11 73.6 89 42.7
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 1.3e-11 73.2 89 41.6
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 2.2e-11 72.4 97 44.3
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 2.2e-11 72.4 104 38.5
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 2.2e-11 72.4 88 40.9
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.2e-11 72.4 88 40.9
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 2.2e-11 72.4 83 44.6
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 2.2e-11 72.4 90 43.3
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 2.9e-11 72.0 90 43.3
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 2.9e-11 72.0 103 39.8
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 2.9e-11 72.0 93 40.9
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.9e-11 72.0 91 42.9
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 3.8e-11 71.6 101 40.6
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 3.8e-11 71.6 99 38.4
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 3.8e-11 71.6 87 41.4
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 3.8e-11 71.6 89 43.8
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 3.8e-11 71.6 97 43.3
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 4.9e-11 71.2 97 43.3
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 4.9e-11 71.2 96 40.6
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 4.9e-11 71.2 99 41.4
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 4.9e-11 71.2 101 38.6
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 4.9e-11 71.2 99 41.4
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 4.9e-11 71.2 92 40.2
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 4.9e-11 71.2 90 43.3
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 6.5e-11 70.9 101 38.6
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 6.5e-11 70.9 92 40.2
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 6.5e-11 70.9 91 40.7
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 8.4e-11 70.5 100 39.0
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 8.4e-11 70.5 90 41.1
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 8.4e-11 70.5 90 41.1
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 1.1e-10 70.1 99 42.4
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.1e-10 70.1 93 43.0
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 1.4e-10 69.7 101 39.6
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.4e-10 69.7 91 39.6
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.5e-10 68.9 95 38.9
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 2.5e-10 68.9 93 41.9
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 3.2e-10 68.6 93 40.9
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 3.2e-10 68.6 86 41.9
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 4.2e-10 68.2 99 36.4
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 4.2e-10 68.2 89 38.2
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 4.2e-10 68.2 105 41.0
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 4.2e-10 68.2 93 40.9
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 4.2e-10 68.2 101 35.6
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.2e-10 68.2 89 44.9
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 5.5e-10 67.8 89 37.1
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 5.5e-10 67.8 99 38.4
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 5.5e-10 67.8 99 38.4
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 5.5e-10 67.8 104 39.4
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 5.5e-10 67.8 91 41.8
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 5.5e-10 67.8 105 38.1
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 7.1e-10 67.4 111 36.9
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 7.1e-10 67.4 83 41.0
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 9.3e-10 67.0 99 40.4
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 9.3e-10 67.0 82 43.9
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 1.2e-09 66.6 89 38.2
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 1.2e-09 66.6 99 38.4
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 1.2e-09 66.6 99 38.4
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.2e-09 66.6 96 41.7
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.2e-09 66.6 91 38.5
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 1.6e-09 66.2 89 40.4
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 1.6e-09 66.2 89 41.6
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 1.6e-09 66.2 101 32.7
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 2.1e-09 65.9 101 36.6
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 2.1e-09 65.9 89 37.1
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 2.1e-09 65.9 89 37.1
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 2.1e-09 65.9 89 37.1
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.7e-09 65.5 89 42.7
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.7e-09 65.5 57 52.6
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.5e-09 65.1 88 43.2
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 3.5e-09 65.1 89 37.1
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 3.5e-09 65.1 89 37.1
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.5e-09 65.1 93 38.7
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 4.6e-09 64.7 100 40.0
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 6.0e-09 64.3 87 43.7
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 7.9e-09 63.9 85 43.5
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 7.9e-09 63.9 97 40.2
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 7.9e-09 63.9 104 36.5
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 7.9e-09 63.9 96 37.5
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 7.9e-09 63.9 87 36.8
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 1.0e-08 63.5 89 38.2
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 1.0e-08 63.5 99 37.4
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 1.0e-08 63.5 99 37.4
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.0e-08 63.5 89 37.1
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 1.3e-08 63.2 99 36.4
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.8e-08 62.8 89 37.1
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 1.8e-08 62.8 102 36.3
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.8e-08 62.8 90 41.1
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 1.8e-08 62.8 89 40.4
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.8e-08 62.8 88 44.3
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.8e-08 62.8 88 44.3
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 2.3e-08 62.4 99 35.4
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 2.3e-08 62.4 99 35.4
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 2.3e-08 62.4 99 36.4
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 2.3e-08 62.4 92 34.8
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 3.0e-08 62.0 86 38.4
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 3.0e-08 62.0 59 52.5
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 3.9e-08 61.6 89 40.4
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 3.9e-08 61.6 89 40.4
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 5.1e-08 61.2 92 34.8
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 6.7e-08 60.8 107 37.4
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 8.7e-08 60.5 84 40.5
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.1e-07 60.1 86 39.5
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 1.1e-07 60.1 82 41.5
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.1e-07 60.1 99 39.4
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.9e-07 59.3 95 37.9
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.5e-07 58.9 91 37.4
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 3.3e-07 58.5 99 37.4
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 4.3e-07 58.2 78 41.0
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 5.7e-07 57.8 92 34.8
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 7.4e-07 57.4 86 39.5
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.6e-06 56.2 99 36.4
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.1e-06 55.8 93 33.3
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 3.7e-06 55.1 83 37.3
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 8.2e-06 53.9 47 51.1


User provided reference genes

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