Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 0.0e+00 1942.2 1067 100.0
CBR_g39620 Chara braunii HOM05D016928 ORTHO05D017317 3.8e-186 656.4 561 67.4
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 1.3e-93 349.0 371 50.7
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 3.3e-89 334.3 298 54.7
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 9.1e-87 326.2 318 54.1
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 3.5e-86 324.3 302 55.6
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 7.7e-86 323.2 354 50.8
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 1.7e-85 322.0 356 50.0
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 1.7e-85 322.0 318 53.5
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 2.2e-85 321.6 312 53.8
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 2.9e-85 321.2 311 54.3
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 2.9e-85 321.2 312 53.8
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 2.9e-85 321.2 312 53.8
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 3.8e-85 320.9 303 55.1
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 5.0e-85 320.5 372 49.5
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 5.0e-85 320.5 305 54.4
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 6.5e-85 320.1 312 53.8
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 8.5e-85 319.7 310 54.2
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 8.5e-85 319.7 356 48.9
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 1.1e-84 319.3 302 55.6
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 1.1e-84 319.3 301 54.8
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 1.1e-84 319.3 298 56.0
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 1.9e-84 318.5 305 54.8
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 1.9e-84 318.5 306 54.9
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 2.5e-84 318.2 303 55.4
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 2.5e-84 318.2 358 49.2
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 3.2e-84 317.8 299 54.5
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 3.2e-84 317.8 299 54.5
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 3.2e-84 317.8 299 54.5
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 3.2e-84 317.8 297 55.2
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 5.5e-84 317.0 359 49.6
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 7.2e-84 316.6 301 53.5
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 7.2e-84 316.6 346 50.3
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 7.2e-84 316.6 317 53.0
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 9.4e-84 316.2 295 54.9
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 9.4e-84 316.2 297 55.2
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 9.4e-84 316.2 349 51.0
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 9.4e-84 316.2 349 51.0
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 1.2e-83 315.8 309 52.8
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 1.6e-83 315.5 299 54.2
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 1.6e-83 315.5 302 53.3
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.6e-83 315.5 358 49.2
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 1.6e-83 315.5 359 49.6
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 2.1e-83 315.1 311 53.7
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.1e-83 315.1 349 51.0
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 2.1e-83 315.1 349 49.6
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 2.1e-83 315.1 348 50.3
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 2.1e-83 315.1 295 54.9
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 4.7e-83 313.9 295 54.6
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 4.7e-83 313.9 306 53.6
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 4.7e-83 313.9 349 50.7
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 6.1e-83 313.5 297 53.5
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 6.1e-83 313.5 303 53.8
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 6.1e-83 313.5 297 54.5
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 6.1e-83 313.5 352 46.6
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 6.1e-83 313.5 304 54.9
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 8.0e-83 313.2 306 52.6
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 8.0e-83 313.2 299 53.5
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 1.0e-82 312.8 297 53.9
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 1.4e-82 312.4 303 53.1
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 1.8e-82 312.0 297 53.5
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 2.3e-82 311.6 300 55.0
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 2.3e-82 311.6 297 54.5
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 2.3e-82 311.6 300 54.7
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 3.0e-82 311.2 349 50.4
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 4.0e-82 310.8 301 52.8
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 4.0e-82 310.8 297 53.9
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 4.0e-82 310.8 297 52.9
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 4.0e-82 310.8 297 55.2
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 5.2e-82 310.5 297 53.5
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 5.2e-82 310.5 312 53.8
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 5.2e-82 310.5 317 52.4
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 6.7e-82 310.1 305 54.1
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 8.8e-82 309.7 313 52.1
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 8.8e-82 309.7 297 53.9
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 1.1e-81 309.3 297 54.9
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 1.1e-81 309.3 356 48.3
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 1.1e-81 309.3 306 53.6
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 1.1e-81 309.3 347 49.9
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 1.5e-81 308.9 301 53.2
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 1.5e-81 308.9 293 54.3
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 2.0e-81 308.5 295 53.9
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 2.0e-81 308.5 301 53.5
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 2.0e-81 308.5 337 49.9
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 2.6e-81 308.1 317 52.1
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 4.4e-81 307.4 297 54.2
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 5.7e-81 307.0 299 53.8
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 5.7e-81 307.0 297 53.9
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 7.5e-81 306.6 315 52.4
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 9.7e-81 306.2 319 51.7
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.7e-80 305.4 297 54.9
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 1.7e-80 305.4 295 53.9
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 4.8e-80 303.9 295 55.3
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 3.5e-78 297.7 308 52.3
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 3.5e-78 297.7 309 51.1
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 3.5e-78 297.7 343 49.0
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 2.9e-77 294.7 347 47.8
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 3.8e-77 294.3 334 47.9
CBR_g34269 Chara braunii HOM05D016928 ORTHO05D012435 3.8e-77 294.3 151 90.1
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 9.4e-76 289.7 340 48.8
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 5.2e-74 283.9 322 50.3
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 2.8e-72 278.1 284 54.6
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 2.8e-72 278.1 269 55.8
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 3.7e-72 277.7 335 48.1
CBR_g21976 Chara braunii HOM05D016928 ORTHO05D017317 4.1e-71 274.2 169 71.0
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 9.1e-71 273.1 260 53.5
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 3.5e-70 271.2 258 55.0
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 4.5e-70 270.8 258 53.5
CBR_g31184 Chara braunii HOM05D001254 ORTHO05D001386 2.9e-69 268.1 179 67.6
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 1.5e-68 265.8 266 53.4
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 2.7e-67 261.5 260 50.8
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 4.4e-65 254.2 247 55.1
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 9.8e-65 253.1 328 47.0
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 3.7e-64 251.1 309 46.0
CBR_g1170 Chara braunii HOM05D009236 ORTHO05D017317 1.8e-63 248.8 162 69.8
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 6.6e-61 240.4 269 49.1
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 4.3e-60 237.7 219 56.6
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 2.8e-59 235.0 226 52.7
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 2.9e-56 224.9 206 52.4
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 5.0e-53 214.2 163 60.7
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 2.5e-52 211.8 325 38.2
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 2.3e-50 205.3 208 49.5
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 1.2e-49 203.0 352 35.2
CBR_g30916 Chara braunii HOM05D016928 ORTHO05D017317 2.4e-47 195.3 132 67.4
CBR_g8646 Chara braunii HOM05D002343 ORTHO05D017317 1.6e-46 192.6 119 70.6
CBR_g40360 Chara braunii HOM05D016928 ORTHO05D017317 5.0e-45 187.6 119 69.7
CBR_g19257 Chara braunii HOM05D016928 ORTHO05D017317 8.6e-45 186.8 119 69.7
CBR_g28670 Chara braunii HOM05D006162 ORTHO05D007627 2.1e-43 182.2 119 66.4
CBR_g32038 Chara braunii HOM05D002802 ORTHO05D000353 2.8e-43 181.8 119 66.4
CBR_g29507 Chara braunii HOM05D006695 ORTHO05D008239 3.1e-42 178.3 113 69.0
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 7.5e-41 173.7 166 55.4
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 2.4e-39 168.7 212 43.9
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 8.6e-37 160.2 144 54.9
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 2.0e-33 149.1 207 44.0
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.2e-32 145.6 160 50.0
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 3.8e-32 144.8 317 33.8
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 2.5e-28 132.1 184 40.2
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 7.1e-23 114.0 118 50.0
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 6.6e-21 107.5 97 57.7
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 3.6e-19 101.7 233 35.6
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 8.1e-19 100.5 136 45.6
CBR_g16841 Chara braunii HOM05D003642 ORTHO05D004460 2.6e-17 95.5 54 75.9
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 4.2e-15 88.2 99 46.5
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 4.3e-12 78.2 51 64.7
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 3.6e-11 75.1 57 64.9


User provided reference genes

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