Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g84869 Chara braunii HOM05D004719 ORTHO05D005519 1.0e-117 426.8 218 100.0
MSTRG.8686 Avicennia marina HOM05D004719 ORTHO05D005519 1.2e-12 77.8 82 51.2
vmacro10099 Vaccinium macrocarpon HOM05D004719 ORTHO05D005519 7.5e-12 75.1 130 39.2
Sp6g15480 Schrenkiella parvula HOM05D004719 ORTHO05D005519 9.7e-12 74.7 147 33.3
SGA_v2.0_scaffold192G40593 Striga asiatica HOM05D004719 ORTHO05D005519 1.7e-11 73.9 139 38.1
A03p15190 Brassica napus HOM05D004719 ORTHO05D005519 2.2e-11 73.6 97 44.3
TAR333G0005 Trochodendron aralioides HOM05D004719 ORTHO05D005519 2.2e-11 73.6 114 39.5
Oeu009271.1 Olea europaea HOM05D004719 ORTHO05D005519 3.7e-11 72.8 131 41.2
Actinidia31859 Actinidia chinensis HOM05D004719 ORTHO05D005519 4.8e-11 72.4 64 59.4
BcaC01g06246 Brassica carinata HOM05D004719 ORTHO05D005519 4.8e-11 72.4 97 43.3
BcaNung06632 Brassica carinata HOM05D004719 ORTHO05D005519 4.8e-11 72.4 97 43.3
C03p17720 Brassica napus HOM05D004719 ORTHO05D005519 4.8e-11 72.4 97 43.3
BraA03t10813Z Brassica rapa HOM05D004719 ORTHO05D005519 8.2e-11 71.6 96 42.7
Oeu049096.1 Olea europaea HOM05D004719 ORTHO05D005519 1.4e-10 70.9 85 45.9
PGR042G1451 Punica granatum HOM05D004719 ORTHO05D005519 1.4e-10 70.9 72 48.6
Sed0016292 Sechium edule HOM05D004719 ORTHO05D005519 1.4e-10 70.9 73 50.7
BolC3t14182H Brassica oleracea HOM05D004719 ORTHO05D005519 1.8e-10 70.5 93 44.1
CAN.G108.16 Capsicum annuum HOM05D004719 ORTHO05D005519 1.8e-10 70.5 81 49.4
TWI23G0029 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 1.8e-10 70.5 81 46.9
TAR374G0131 Trochodendron aralioides HOM05D004719 ORTHO05D005519 1.8e-10 70.5 102 42.2
BcaB08g35695 Brassica carinata HOM05D004719 ORTHO05D005519 3.1e-10 69.7 68 51.5
Manes.06G156000 Manihot esculenta HOM05D004719 ORTHO05D005519 3.1e-10 69.7 71 50.7
Manes.14G019414 Manihot esculenta HOM05D004719 ORTHO05D005519 3.1e-10 69.7 48 62.5
Rhsim09G0203300 Rhododendron simsii HOM05D004719 ORTHO05D005519 3.1e-10 69.7 120 39.2
CSS0006896 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 4.1e-10 69.3 113 39.8
CSS0042605 Camellia sinensis var. sinensis HOM05D004719 ORTHO05D005519 4.1e-10 69.3 113 39.8
ECA238G1719 Erigeron canadensis HOM05D000316 ORTHO05D001978 4.1e-10 69.3 61 54.1
CARHR266390 Cardamine hirsuta HOM05D004719 ORTHO05D005519 5.3e-10 68.9 60 55.0
Thhalv10014603m.g Eutrema salsugineum HOM05D004719 ORTHO05D005519 5.3e-10 68.9 163 32.5
Aa31LG3G9210 Aethionema arabicum HOM05D004719 ORTHO05D005519 7.0e-10 68.6 146 32.2
Cc02_g02010 Coffea canephora HOM05D004719 ORTHO05D005519 7.0e-10 68.6 77 48.1
MELO3C005862.2 Cucumis melo HOM05D004719 ORTHO05D005519 7.0e-10 68.6 53 58.5
Duzib068G0142 Durio zibethinus HOM05D004719 ORTHO05D005519 7.0e-10 68.6 103 38.8
Migut.F00251 Erythranthe guttata HOM05D004719 ORTHO05D005519 7.0e-10 68.6 140 35.0
PGSC0003DMG400009067 Solanum tuberosum HOM05D004719 ORTHO05D005519 7.0e-10 68.6 53 62.3
FvH4_7g30890 Fragaria vesca HOM05D004719 ORTHO05D005519 9.1e-10 68.2 59 55.9
FAN01G1522 Fragaria x ananassa HOM05D004719 ORTHO05D005519 9.1e-10 68.2 59 55.9
FAN03G2418 Fragaria x ananassa HOM05D004719 ORTHO05D005519 9.1e-10 68.2 59 55.9
SalBow4G0130 Salvia bowleyana HOM05D004719 ORTHO05D005519 9.1e-10 68.2 78 48.7
SalBow4G0254 Salvia bowleyana HOM05D004719 ORTHO05D005519 9.1e-10 68.2 78 48.7
unitig_747.g21854 Utricularia gibba HOM05D004719 ORTHO05D005519 9.1e-10 68.2 70 48.6
Ah.07g206120 Amaranthus hybridus HOM05D004719 ORTHO05D005519 1.2e-09 67.8 57 59.6
FAN06G4721 Fragaria x ananassa HOM05D004719 ORTHO05D005519 1.2e-09 67.8 59 55.9
Dinv35299 Davidia involucrata HOM05D004719 ORTHO05D005519 1.6e-09 67.4 113 40.7
Lsat_1_v5_gn_2_134381 Lactuca sativa HOM05D004719 ORTHO05D005519 1.6e-09 67.4 56 53.6
Os06g0160400 Oryza sativa ssp. japonica HOM05D004719 ORTHO05D005519 1.6e-09 67.4 121 47.1
BcaNung07347 Brassica carinata HOM05D004719 ORTHO05D005519 2.0e-09 67.0 103 34.0
AUR62021055 Chenopodium quinoa HOM05D004719 ORTHO05D005519 2.0e-09 67.0 44 65.9
AUR62031477 Chenopodium quinoa HOM05D004719 ORTHO05D005519 2.0e-09 67.0 44 65.9
DCAR_020296 Daucus carota HOM05D004719 ORTHO05D005519 2.0e-09 67.0 64 54.7
Potri.015G023600 Populus trichocarpa HOM05D004719 ORTHO05D005519 2.0e-09 67.0 60 56.7
Thecc.03G191400 Theobroma cacao HOM05D004719 ORTHO05D005519 2.0e-09 67.0 72 45.8
TWI14G0874 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 2.0e-09 67.0 80 43.8
BcaC04g20465 Brassica carinata HOM05D004719 ORTHO05D005519 2.7e-09 66.6 75 48.0
C09p43180 Brassica napus HOM05D004719 ORTHO05D005519 2.7e-09 66.6 75 48.0
BolC9t57191H Brassica oleracea HOM05D004719 ORTHO05D005519 2.7e-09 66.6 75 48.0
CANSAT21G2536 Cannabis sativa HOM05D004719 ORTHO05D005519 2.7e-09 66.6 47 61.7
FAN10G3127 Fragaria x ananassa HOM05D004719 ORTHO05D005519 2.7e-09 66.6 59 54.2
Gohir.A11G013800 Gossypium hirsutum HOM05D004719 ORTHO05D005519 2.7e-09 66.6 50 60.0
Lj1g0014949 Lotus japonicus HOM05D004719 ORTHO05D005519 2.7e-09 66.6 60 53.3
BraA10t43168Z Brassica rapa HOM05D004719 ORTHO05D005519 3.5e-09 66.2 93 40.9
Glyma.06G124600 Glycine max HOM05D004719 ORTHO05D005519 3.5e-09 66.2 77 48.1
Peaxi162Scf00618g00530 Petunia axillaris HOM05D004719 ORTHO05D005519 3.5e-09 66.2 44 65.9
Aqoxy5G04028 Aquilegia oxysepala HOM05D004719 ORTHO05D005519 4.5e-09 65.9 53 58.5
PSO170G2586 Papaver somniferum HOM05D004719 ORTHO05D005519 4.5e-09 65.9 123 38.2
Potri.012G033300 Populus trichocarpa HOM05D004719 ORTHO05D005519 4.5e-09 65.9 54 55.6
GSVIVG01028725001 Vitis vinifera HOM05D004719 ORTHO05D005519 4.5e-09 65.9 68 52.9
Duzib205G0172 Durio zibethinus HOM05D004719 ORTHO05D005519 5.9e-09 65.5 51 58.8
Glyma.04G239200 Glycine max HOM05D004719 ORTHO05D005519 5.9e-09 65.5 76 48.7
HanXRQChr07g0207131 Helianthus annuus HOM05D004719 ORTHO05D005519 5.9e-09 65.5 67 46.3
Nn1g01780 Nelumbo nucifera HOM05D004719 ORTHO05D005519 5.9e-09 65.5 96 40.6
Phvul.008G159900 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 5.9e-09 65.5 107 39.3
SEGI_18632 Sequoiadendron giganteum HOM05D004719 ORTHO05D005519 5.9e-09 65.5 50 64.0
Solyc03g007520.3 Solanum lycopersicum HOM05D004719 ORTHO05D005519 5.9e-09 65.5 53 60.4
Sopen03g003480 Solanum pennellii HOM05D004719 ORTHO05D005519 5.9e-09 65.5 53 60.4
AT5G53330 Arabidopsis thaliana HOM05D004719 ORTHO05D005519 7.7e-09 65.1 53 56.6
arahy.Tifrunner.gnm1.ann1.A0EQPQ Arachis hypogaea HOM05D004719 ORTHO05D005519 7.7e-09 65.1 53 54.7
CAN.G204.6 Capsicum annuum HOM05D004719 ORTHO05D005519 7.7e-09 65.1 50 62.0
Duzib084G0320 Durio zibethinus HOM05D004719 ORTHO05D005519 7.7e-09 65.1 50 60.0
Gohir.D11G014000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 7.7e-09 65.1 50 58.0
Gorai.007G014400 Gossypium raimondii HOM05D004719 ORTHO05D005519 7.7e-09 65.1 50 58.0
Nitab4.5_0001331g0150 Nicotiana tabacum HOM05D004719 ORTHO05D005519 1.0e-08 64.7 64 53.1
VMungo1309G2489 Vigna mungo HOM05D004719 ORTHO05D005519 1.0e-08 64.7 56 53.6
Eucgr.A02672 Eucalyptus grandis HOM05D004719 ORTHO05D005519 1.3e-08 64.3 64 53.1
Lalb_Chr23g0271411 Lupinus albus HOM05D004719 ORTHO05D005519 1.3e-08 64.3 63 46.0
Peaxi162Scf00904g00473 Petunia axillaris HOM05D004719 ORTHO05D005519 1.3e-08 64.3 59 52.5
EL10Ac3g05361 Beta vulgaris HOM05D004719 ORTHO05D005519 1.7e-08 63.9 62 51.6
Carub.0008s1351 Capsella rubella HOM05D004719 ORTHO05D005519 1.7e-08 63.9 69 47.8
CiPaw.06G006600 Carya illinoinensis HOM05D004719 ORTHO05D005519 1.7e-08 63.9 44 65.9
Ciclev10005830m.g Citrus clementina HOM05D004719 ORTHO05D005519 1.7e-08 63.9 149 34.2
Dinv28349 Davidia involucrata HOM05D004719 ORTHO05D005519 1.7e-08 63.9 44 65.9
Nn7g37372 Nelumbo nucifera HOM05D004719 ORTHO05D005519 1.7e-08 63.9 44 63.6
PSO063G4149 Papaver somniferum HOM05D004719 ORTHO05D005519 1.7e-08 63.9 123 37.4
THA.LOC104800282 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 1.7e-08 63.9 67 49.3
A10p10840 Brassica napus HOM05D004719 ORTHO05D005519 2.2e-08 63.5 78 46.2
Sed0024250 Sechium edule HOM05D004719 ORTHO05D005519 2.2e-08 63.5 57 47.4
TWI39G0409 Tripterygium wilfordii HOM05D004719 ORTHO05D005519 2.2e-08 63.5 84 42.9
AL8G28040 Arabidopsis lyrata HOM05D004719 ORTHO05D005519 2.9e-08 63.2 111 37.8
arahy.Tifrunner.gnm1.ann1.YXX8CM Arachis hypogaea HOM05D004719 ORTHO05D005519 2.9e-08 63.2 52 53.8
COL.COLO4_08254 Corchorus olitorius HOM05D004719 ORTHO05D005519 2.9e-08 63.2 47 59.6
Atru.chr1.287 Acer truncatum HOM05D004719 ORTHO05D005519 3.8e-08 62.8 44 63.6
Nitab4.5_0000472g0190 Nicotiana tabacum HOM05D004719 ORTHO05D005519 3.8e-08 62.8 59 55.9
RcHm_v2.0_Chr1g0379961 Rosa chinensis HOM05D004719 ORTHO05D005519 3.8e-08 62.8 151 33.8
ATR0661G055 Amborella trichopoda HOM05D004719 ORTHO05D005519 5.0e-08 62.4 122 34.4
HanXRQChr14g0462731 Helianthus annuus HOM05D004719 ORTHO05D005519 5.0e-08 62.4 53 50.9
Cfa016352 Carpinus fangiana HOM05D004719 ORTHO05D005519 6.5e-08 62.0 44 61.4
Hma1.2p1_1891F.1_g306690 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 6.5e-08 62.0 114 38.6
PGSC0003DMG400028901 Solanum tuberosum HOM05D004719 ORTHO05D005519 6.5e-08 62.0 56 53.6
MD01G1213900 Malus domestica HOM05D004719 ORTHO05D005519 8.5e-08 61.6 53 58.5
QL04p064474 Quercus lobata HOM05D000013 ORTHO05D000011 8.5e-08 61.6 47 59.6
MSTRG.27052 Avicennia marina HOM05D004719 ORTHO05D005519 1.1e-07 61.2 102 39.2
MD07G1283600 Malus domestica HOM05D004719 ORTHO05D005519 1.1e-07 61.2 70 48.6
Prupe.2G306000 Prunus persica HOM05D004719 ORTHO05D005519 1.1e-07 61.2 51 58.8
Sc13g0009490 Simmondsia chinensis HOM05D004719 ORTHO05D005519 1.1e-07 61.2 44 61.4
CsaV3_5G000780 Cucumis sativus L. HOM05D004719 ORTHO05D005519 1.5e-07 60.8 50 56.0
Mapoly0050s0076 Marchantia polymorpha HOM05D004719 ORTHO05D005519 1.5e-07 60.8 115 40.0
Phvul.009G136700 Phaseolus vulgaris HOM05D004719 ORTHO05D005519 1.5e-07 60.8 60 50.0
QL09p011210 Quercus lobata HOM05D004719 ORTHO05D005519 1.9e-07 60.5 67 44.8
Haze_00101 Corylus avellana HOM05D004719 ORTHO05D005519 2.5e-07 60.1 41 63.4
Gohir.A09G183300 Gossypium hirsutum HOM05D004719 ORTHO05D005519 2.5e-07 60.1 58 51.7
BcaC01g06237 Brassica carinata HOM05D001465 ORTHO05D001434 3.2e-07 59.7 64 48.4
BolC3t14188H Brassica oleracea HOM05D004719 ORTHO05D005519 3.2e-07 59.7 64 48.4
HPP92_008641 Vanilla planifolia HOM05D004719 ORTHO05D005519 3.2e-07 59.7 151 32.5
AagrBONN_evm.TU.Sc2ySwM_340.345 Anthoceros agrestis HOM05D004719 ORTHO05D005519 4.2e-07 59.3 106 37.7
Gohir.D09G178000 Gossypium hirsutum HOM05D004719 ORTHO05D005519 4.2e-07 59.3 86 39.5
Gorai.006G200100 Gossypium raimondii HOM05D004719 ORTHO05D005519 4.2e-07 59.3 86 39.5
Cpa.g.sc3.37 Carica papaya HOM05D004719 ORTHO05D005519 1.2e-06 57.8 143 30.1
FvH4_7g16570 Fragaria vesca HOM05D004719 ORTHO05D005519 1.6e-06 57.4 58 50.0
Medtr3g090640 Medicago truncatula HOM05D004719 ORTHO05D005519 1.6e-06 57.4 49 53.1
Ca_16667_v3 Cicer arietinum L. HOM05D004719 ORTHO05D005519 2.1e-06 57.0 75 37.3
THA.LOC104811935 Tarenaya hassleriana HOM05D004719 ORTHO05D005519 2.1e-06 57.0 142 33.1
Zm00001eb376120 Zea mays HOM05D004719 ORTHO05D005519 2.7e-06 56.6 52 50.0
FAN18G3526 Fragaria x ananassa HOM05D006854 ORTHO05D210570 4.7e-06 55.8 67 46.3
Hma1.2p1_0327F.1_g126670 Hydrangea macrophylla HOM05D004719 ORTHO05D005519 6.1e-06 55.5 47 55.3
PGR142G1718 Punica granatum HOM05D004719 ORTHO05D005519 8.0e-06 55.1 61 45.9


User provided reference genes

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