Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g65247 Chara braunii HOM05D000749 ORTHO05D001296 1.5e-16 88.2 39 100.0
AUR62025717 Chenopodium quinoa HOM05D000749 ORTHO05D001296 5.1e-12 73.2 39 79.5
AUR62001287 Chenopodium quinoa HOM05D000749 ORTHO05D001296 6.6e-12 72.8 39 76.9
Manes.06G115500 Manihot esculenta HOM05D000749 ORTHO05D001296 1.9e-11 71.2 39 74.4
Hund05651 Selenicereus undatus HOM05D000749 ORTHO05D001296 1.9e-11 71.2 39 74.4
AagrBONN_evm.TU.Sc2ySwM_340.413 Anthoceros agrestis HOM05D000749 ORTHO05D001296 3.3e-11 70.5 39 71.8
COL.COLO4_03518 Corchorus olitorius HOM05D000749 ORTHO05D001296 3.3e-11 70.5 39 74.4
Potri.012G093800 Populus trichocarpa HOM05D000749 ORTHO05D001296 3.3e-11 70.5 39 74.4
Ah.15g095300 Amaranthus hybridus HOM05D000749 ORTHO05D001296 4.3e-11 70.1 39 71.8
Sc04g0000920 Simmondsia chinensis HOM05D000749 ORTHO05D001296 4.3e-11 70.1 39 74.4
Medtr4g104030 Medicago truncatula HOM05D000749 ORTHO05D001296 5.6e-11 69.7 39 74.4
Cpa.g.sc4.78 Carica papaya HOM05D000749 ORTHO05D001296 7.3e-11 69.3 39 74.4
CiPaw.12G036200 Carya illinoinensis HOM05D000749 ORTHO05D001296 7.3e-11 69.3 39 71.8
Glyma.05G045200 Glycine max HOM05D000749 ORTHO05D001296 7.3e-11 69.3 39 76.9
Atru.chr9.1018 Acer truncatum HOM05D000749 ORTHO05D001296 9.6e-11 68.9 39 71.8
Aqoxy3G01429 Aquilegia oxysepala HOM05D000749 ORTHO05D001296 9.6e-11 68.9 39 71.8
Manes.14G055000 Manihot esculenta HOM05D000749 ORTHO05D001296 9.6e-11 68.9 39 71.8
Eucgr.K02753 Eucalyptus grandis HOM05D000749 ORTHO05D001296 1.2e-10 68.6 39 71.8
Lj4g0020571 Lotus japonicus HOM05D000749 ORTHO05D001296 1.2e-10 68.6 39 71.8
Mapoly0133s0011 Marchantia polymorpha HOM05D000749 ORTHO05D001296 1.2e-10 68.6 38 71.1
Psat4g064840 Pisum sativum HOM05D000749 ORTHO05D001296 1.2e-10 68.6 39 71.8
SalBow5G1049 Salvia bowleyana HOM05D000749 ORTHO05D001296 1.2e-10 68.6 39 74.4
SalBow5G4020 Salvia bowleyana HOM05D000749 ORTHO05D001296 1.2e-10 68.6 39 74.4
Sed0019879 Sechium edule HOM05D000749 ORTHO05D001296 1.2e-10 68.6 39 69.2
ClCG03G003540 Citrullus lanatus HOM05D000749 ORTHO05D001296 1.6e-10 68.2 39 66.7
MELO3C002338.2 Cucumis melo HOM05D000749 ORTHO05D001296 1.6e-10 68.2 39 66.7
CsaV3_1G009350 Cucumis sativus L. HOM05D000749 ORTHO05D001296 1.6e-10 68.2 39 66.7
Migut.I00479 Erythranthe guttata HOM05D000749 ORTHO05D001296 1.6e-10 68.2 39 74.4
Glyma.17G127400 Glycine max HOM05D000749 ORTHO05D001296 1.6e-10 68.2 39 74.4
MD14G1162900 Malus domestica HOM05D000749 ORTHO05D001296 1.6e-10 68.2 39 71.8
Phvul.003G208500 Phaseolus vulgaris HOM05D000749 ORTHO05D001296 1.6e-10 68.2 39 74.4
GSVIVG01007535001 Vitis vinifera HOM05D000749 ORTHO05D001296 1.6e-10 68.2 39 74.4
DCAR_021604 Daucus carota HOM05D000749 ORTHO05D001296 2.1e-10 67.8 39 74.4
Prupe.5G156200 Prunus persica HOM05D000749 ORTHO05D001296 2.1e-10 67.8 39 71.8
QL10p005004 Quercus lobata HOM05D000749 ORTHO05D001296 2.1e-10 67.8 38 71.1
THA.LOC104818193 Tarenaya hassleriana HOM05D000749 ORTHO05D001296 2.1e-10 67.8 39 69.2
TAR371G1233 Trochodendron aralioides HOM05D000749 ORTHO05D001296 2.1e-10 67.8 39 69.2
EL10Ac7g18084 Beta vulgaris HOM05D000749 ORTHO05D001296 2.8e-10 67.4 39 71.8
TWI39G0856 Tripterygium wilfordii HOM05D000749 ORTHO05D001296 2.8e-10 67.4 39 71.8
CARHR277180 Cardamine hirsuta HOM05D000749 ORTHO05D001296 3.6e-10 67.0 39 69.2
MD06G1149000 Malus domestica HOM05D000749 ORTHO05D001296 3.6e-10 67.0 39 71.8
Peaxi162Scf00089g00329 Petunia axillaris HOM05D000749 ORTHO05D001296 3.6e-10 67.0 39 71.8
MSTRG.22919 Avicennia marina HOM05D000749 ORTHO05D001296 4.7e-10 66.6 39 71.8
Cc04_g10270 Coffea canephora HOM05D000749 ORTHO05D001296 4.7e-10 66.6 39 71.8
Os12g0548300 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D001296 4.7e-10 66.6 39 74.4
PSO017G0592 Papaver somniferum HOM05D000749 ORTHO05D001296 4.7e-10 66.6 39 69.2
Rhsim12G0172200 Rhododendron simsii HOM05D000749 ORTHO05D001296 4.7e-10 66.6 39 71.8
VMungo1215G1043 Vigna mungo HOM05D000749 ORTHO05D001296 4.7e-10 66.6 39 69.2
Aa31LG1G18690 Aethionema arabicum HOM05D000749 ORTHO05D001296 6.2e-10 66.2 39 66.7
AL8G40390 Arabidopsis lyrata HOM05D000749 ORTHO05D001296 6.2e-10 66.2 39 69.2
Carub.0008s2406 Capsella rubella HOM05D000749 ORTHO05D001296 6.2e-10 66.2 39 69.2
Dinv02923 Davidia involucrata HOM05D000749 ORTHO05D001296 6.2e-10 66.2 39 71.8
Dinv38464 Davidia involucrata HOM05D000749 ORTHO05D001296 6.2e-10 66.2 39 71.8
FAN08G0377 Fragaria x ananassa HOM05D000063 ORTHO05D008721 6.2e-10 66.2 39 71.8
RcHm_v2.0_Chr7g0190891 Rosa chinensis HOM05D000749 ORTHO05D001296 6.2e-10 66.2 39 71.8
SEGI_40496 Sequoiadendron giganteum HOM05D000749 ORTHO05D001296 6.2e-10 66.2 39 69.2
CSS0045626 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D001296 8.1e-10 65.9 39 71.8
CANSAT80G1922 Cannabis sativa HOM05D000749 ORTHO05D001296 8.1e-10 65.9 39 69.2
Lj9A475G64 Lonicera japonica HOM05D000749 ORTHO05D001296 8.1e-10 65.9 39 71.8
Thecc.03G123400 Theobroma cacao HOM05D000749 ORTHO05D001296 8.1e-10 65.9 39 69.2
AT5G63310 Arabidopsis thaliana HOM05D000749 ORTHO05D001296 1.1e-09 65.5 39 66.7
CAN.G352.54 Capsicum annuum HOM05D000749 ORTHO05D001296 1.1e-09 65.5 39 71.8
ECA232G2562 Erigeron canadensis HOM05D000749 ORTHO05D001296 1.1e-09 65.5 39 71.8
vmacro16710 Vaccinium macrocarpon HOM05D000749 ORTHO05D001296 1.1e-09 65.5 39 69.2
FvH4_5g07600 Fragaria vesca HOM05D000749 ORTHO05D001296 1.4e-09 65.1 39 71.8
Gohir.A09G245300 Gossypium hirsutum HOM05D000749 ORTHO05D001296 1.4e-09 65.1 39 69.2
Gohir.D09G246200 Gossypium hirsutum HOM05D000749 ORTHO05D001296 1.4e-09 65.1 39 69.2
Gorai.006G270700 Gossypium raimondii HOM05D000749 ORTHO05D001296 1.4e-09 65.1 39 69.2
HanXRQChr16g0497911 Helianthus annuus HOM05D000749 ORTHO05D001296 1.4e-09 65.1 39 71.8
Lalb_Chr07g0183241 Lupinus albus HOM05D000749 ORTHO05D001296 1.4e-09 65.1 39 64.1
PSO478G4265 Papaver somniferum HOM05D000749 ORTHO05D001296 1.4e-09 65.1 39 69.2
Peaxi162Scf00763g00230 Petunia axillaris HOM05D000749 ORTHO05D001296 1.4e-09 65.1 39 71.8
Solyc03g110960.3 Solanum lycopersicum HOM05D000749 ORTHO05D001296 1.4e-09 65.1 39 69.2
Sopen03g030150 Solanum pennellii HOM05D000749 ORTHO05D001296 1.4e-09 65.1 39 69.2
Sopen06g028240 Solanum pennellii HOM05D000749 ORTHO05D001296 1.4e-09 65.1 39 71.8
Zm00001eb410190 Zea mays HOM05D000749 ORTHO05D001296 1.4e-09 65.1 39 74.4
A06p29990 Brassica napus HOM05D000749 ORTHO05D001296 1.8e-09 64.7 39 66.7
CDE08G0479 Ceratophyllum demersum HOM05D000749 ORTHO05D001296 1.8e-09 64.7 39 64.1
Duzib205G2044 Durio zibethinus HOM05D000749 ORTHO05D001296 1.8e-09 64.7 39 66.7
Thhalv10004851m.g Eutrema salsugineum HOM05D000749 ORTHO05D001296 1.8e-09 64.7 39 66.7
FAN04G0703 Fragaria x ananassa HOM05D000749 ORTHO05D008721 1.8e-09 64.7 39 69.2
FAN13G2053 Fragaria x ananassa HOM05D000749 ORTHO05D001296 1.8e-09 64.7 39 69.2
TPR.G37449 Trifolium pratense HOM05D000749 ORTHO05D001296 1.8e-09 64.7 39 69.2
PGR044G2562 Punica granatum HOM05D000749 ORTHO05D001296 2.4e-09 64.3 39 66.7
PGR044G2572 Punica granatum HOM05D000749 ORTHO05D001296 2.4e-09 64.3 39 66.7
HPP92_013527 Vanilla planifolia HOM05D000749 ORTHO05D001296 2.4e-09 64.3 39 66.7
BcaB04g19912 Brassica carinata HOM05D000749 ORTHO05D001296 4.0e-09 63.5 39 64.1
A09p08210 Brassica napus HOM05D000336 ORTHO05D002301 4.0e-09 63.5 39 66.7
C09p09280 Brassica napus HOM05D000336 ORTHO05D002301 4.0e-09 63.5 39 66.7
BolC9t53841H Brassica oleracea HOM05D000336 ORTHO05D002301 4.0e-09 63.5 39 66.7
BraA09t36472Z Brassica rapa HOM05D000336 ORTHO05D002301 4.0e-09 63.5 39 66.7
FAN18G2072 Fragaria x ananassa HOM05D000063 ORTHO05D008721 4.0e-09 63.5 38 68.4
Pp3c13_12020 Physcomitrium patens HOM05D000749 ORTHO05D001296 4.0e-09 63.5 39 66.7
Sp2g26430 Schrenkiella parvula HOM05D000749 ORTHO05D001296 5.2e-09 63.2 39 64.1
Solyc06g071960.4 Solanum lycopersicum HOM05D000749 ORTHO05D001296 5.2e-09 63.2 39 69.2
PGSC0003DMG400026976 Solanum tuberosum HOM05D000749 ORTHO05D001296 5.2e-09 63.2 39 71.8
Nn4g22449 Nelumbo nucifera HOM05D000749 ORTHO05D001296 6.9e-09 62.8 39 69.2
Nitab4.5_0013500g0020 Nicotiana tabacum HOM05D000749 ORTHO05D001296 8.9e-09 62.4 39 69.2
Actinidia28670 Actinidia chinensis HOM05D000749 ORTHO05D001296 1.2e-08 62.0 34 73.5
BcaC01g02574 Brassica carinata HOM05D000749 ORTHO05D001296 1.2e-08 62.0 39 64.1
C03p63310 Brassica napus HOM05D000749 ORTHO05D001296 1.2e-08 62.0 39 64.1
BolC3t18584H Brassica oleracea HOM05D000749 ORTHO05D001296 1.2e-08 62.0 39 64.1
BraA06t25950Z Brassica rapa HOM05D000749 ORTHO05D001296 1.2e-08 62.0 39 64.1
Lsat_1_v5_gn_4_78760 Lactuca sativa HOM05D000749 ORTHO05D001296 1.2e-08 62.0 39 69.2
TAR446G0001 Trochodendron aralioides HOM05D000749 ORTHO05D001296 1.2e-08 62.0 39 64.1
Nitab4.5_0000339g0050 Nicotiana tabacum HOM05D000749 ORTHO05D001296 1.5e-08 61.6 39 69.2
arahy.Tifrunner.gnm1.ann1.80CTZT Arachis hypogaea HOM05D000749 ORTHO05D001296 2.0e-08 61.2 39 64.1
Lalb_Chr12g0202111 Lupinus albus HOM05D000749 ORTHO05D001296 2.0e-08 61.2 39 61.5
Pp3c12_6420 Physcomitrium patens HOM05D000749 ORTHO05D001296 2.0e-08 61.2 39 61.5
SMO141G0102 Selaginella moellendorffii HOM05D000749 ORTHO05D001296 2.0e-08 61.2 39 64.1
CAN.G1046.9 Capsicum annuum HOM05D000749 ORTHO05D001296 2.6e-08 60.8 39 69.2
ATR0824G250 Amborella trichopoda HOM05D000749 ORTHO05D001296 5.8e-08 59.7 39 61.5
Duzib084G0783 Durio zibethinus HOM05D000749 ORTHO05D001296 7.6e-08 59.3 39 64.1
THA.LOC104821505 Tarenaya hassleriana HOM05D000749 ORTHO05D001296 9.9e-08 58.9 39 61.5
Haze_05127 Corylus avellana HOM05D000703 ORTHO05D000633 1.7e-07 58.2 38 63.2
SMO141G0082 Selaginella moellendorffii HOM05D000749 ORTHO05D001296 2.9e-07 57.4 39 61.5
Os07g0492000 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D001296 4.9e-07 56.6 38 57.9
SMO115G0003 Selaginella moellendorffii HOM05D000749 ORTHO05D001296 8.4e-07 55.8 39 56.4
SGA_v2.0_scaffold223G42907 Striga asiatica HOM05D000749 ORTHO05D001296 8.4e-07 55.8 39 61.5
Cre07.g325734 Chlamydomonas reinhardtii HOM05D000749 ORTHO05D001296 1.1e-06 55.5 39 59.0
Zm00001eb321790 Zea mays HOM05D000749 ORTHO05D001296 1.1e-06 55.5 38 55.3
CiPaw.05G163300 Carya illinoinensis HOM05D000749 ORTHO05D001296 1.4e-06 55.1 39 59.0
CiPaw.13G025200 Carya illinoinensis HOM05D000749 ORTHO05D001296 1.4e-06 55.1 39 59.0
Cre16.g650550 Chlamydomonas reinhardtii HOM05D000749 ORTHO05D001296 1.9e-06 54.7 39 59.0
COL.COLO4_37317 Corchorus olitorius HOM05D000749 ORTHO05D001296 2.4e-06 54.3 39 56.4
CANSAT25G3261 Cannabis sativa HOM05D000749 ORTHO05D001296 4.2e-06 53.5 39 59.0
Sc02g0003140 Simmondsia chinensis HOM05D000749 ORTHO05D001296 4.2e-06 53.5 39 53.8
Actinidia12640 Actinidia chinensis HOM05D000749 ORTHO05D001296 5.4e-06 53.1 39 53.8
Actinidia21631 Actinidia chinensis HOM05D000749 ORTHO05D001296 5.4e-06 53.1 39 53.8
HanXRQChr01g0017621 Helianthus annuus HOM05D000749 ORTHO05D001296 7.1e-06 52.8 39 53.8
CDE11G0249 Ceratophyllum demersum HOM05D000749 ORTHO05D001296 9.3e-06 52.4 39 53.8
Hma1.2p1_1508F.1_g287780 Hydrangea macrophylla HOM05D000749 ORTHO05D001296 9.3e-06 52.4 39 51.3
Os10g0563700 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D001296 9.3e-06 52.4 38 52.6
Sc26g0001640 Simmondsia chinensis HOM05D000749 ORTHO05D001296 9.3e-06 52.4 39 53.8


User provided reference genes

Program Settings