Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 1.9e-139 499.2 256 100.0
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 6.5e-116 421.0 256 82.4
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 7.3e-75 284.6 256 55.1
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 2.1e-74 283.1 255 56.5
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 2.8e-74 282.7 256 55.9
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 6.2e-74 281.6 256 56.6
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 8.0e-74 281.2 256 56.2
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 3.1e-73 279.3 257 55.6
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 3.1e-73 279.3 256 54.7
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 6.8e-73 278.1 256 55.5
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 1.2e-72 277.3 256 55.5
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.2e-72 277.3 256 54.7
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 1.2e-72 277.3 256 55.1
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 1.2e-72 277.3 256 54.7
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 1.2e-72 277.3 256 55.9
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 1.2e-72 277.3 256 54.7
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 1.2e-72 277.3 256 55.5
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 1.5e-72 276.9 254 55.1
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 2.0e-72 276.6 255 56.9
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.0e-72 276.6 256 54.3
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 2.0e-72 276.6 256 54.3
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 2.0e-72 276.6 256 54.3
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.0e-72 276.6 257 56.0
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.0e-72 276.6 257 56.0
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 2.6e-72 276.2 256 54.3
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 4.4e-72 275.4 256 55.5
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 4.4e-72 275.4 256 54.7
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 5.8e-72 275.0 256 53.9
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 5.8e-72 275.0 257 54.1
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 7.5e-72 274.6 261 55.6
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 7.5e-72 274.6 256 54.3
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 1.3e-71 273.9 256 53.5
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 1.7e-71 273.5 256 55.1
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 1.7e-71 273.5 257 55.6
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 2.9e-71 272.7 256 54.7
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 3.7e-71 272.3 255 55.3
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 4.9e-71 271.9 256 53.5
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 8.3e-71 271.2 256 53.9
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 1.1e-70 270.8 256 54.7
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.1e-70 270.8 257 54.5
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 1.4e-70 270.4 256 53.9
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 1.9e-70 270.0 256 53.1
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 3.2e-70 269.2 256 53.5
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 3.2e-70 269.2 256 53.5
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 5.4e-70 268.5 256 53.9
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 5.4e-70 268.5 256 53.9
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 7.0e-70 268.1 256 53.1
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 9.2e-70 267.7 256 53.1
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 9.2e-70 267.7 256 52.3
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 1.6e-69 266.9 254 54.3
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 2.1e-69 266.5 264 51.9
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 2.7e-69 266.2 256 53.9
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 3.5e-69 265.8 256 52.3
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 3.5e-69 265.8 256 53.5
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 4.6e-69 265.4 256 52.7
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 4.6e-69 265.4 255 52.5
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 4.6e-69 265.4 256 53.1
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 7.8e-69 264.6 256 50.8
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 7.8e-69 264.6 256 52.7
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.0e-68 264.2 256 53.9
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 1.0e-68 264.2 256 51.6
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.7e-68 263.5 256 53.5
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 1.7e-68 263.5 264 51.5
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 2.3e-68 263.1 258 52.7
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 2.3e-68 263.1 256 52.3
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 3.0e-68 262.7 258 53.1
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 3.0e-68 262.7 274 49.6
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 3.9e-68 262.3 252 54.0
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 3.9e-68 262.3 255 54.1
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 5.1e-68 261.9 255 54.1
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 5.1e-68 261.9 256 53.5
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 6.6e-68 261.5 255 54.1
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 6.6e-68 261.5 256 52.7
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 6.6e-68 261.5 258 51.9
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 8.6e-68 261.2 256 51.2
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 1.1e-67 260.8 252 53.6
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.5e-67 260.4 274 49.6
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 1.9e-67 260.0 252 53.6
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 1.9e-67 260.0 239 53.1
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 2.5e-67 259.6 255 51.8
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 3.3e-67 259.2 256 50.8
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 4.3e-67 258.8 256 51.6
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 4.3e-67 258.8 256 52.7
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 4.3e-67 258.8 256 52.3
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 9.5e-67 257.7 253 53.0
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 9.5e-67 257.7 239 51.5
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 2.1e-66 256.5 255 51.4
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 3.6e-66 255.8 235 54.5
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 1.1e-65 254.2 228 55.3
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.1e-65 254.2 274 49.3
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 1.1e-65 254.2 239 54.8
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 1.4e-65 253.8 252 52.4
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 1.4e-65 253.8 252 52.4
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.4e-65 253.8 256 52.7
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 1.4e-65 253.8 256 52.3
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 1.8e-65 253.4 239 54.8
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 1.8e-65 253.4 243 53.9
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 1.8e-65 253.4 252 52.0
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 2.3e-65 253.1 253 50.6
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 2.3e-65 253.1 256 51.6
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 5.2e-65 251.9 256 52.7
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 5.2e-65 251.9 300 46.0
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 8.9e-65 251.1 253 52.2
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 8.9e-65 251.1 254 52.4
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 1.2e-64 250.8 252 51.6
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 1.5e-64 250.4 252 51.6
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 2.6e-64 249.6 254 49.2
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 4.4e-64 248.8 254 51.6
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 4.4e-64 248.8 256 50.8
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 5.8e-64 248.4 253 51.8
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 7.5e-64 248.1 254 52.0
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 9.9e-64 247.7 255 52.5
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.3e-63 247.3 211 57.3
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 6.4e-63 245.0 256 49.6
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 8.3e-63 244.6 223 55.6
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 6.6e-60 235.0 228 53.9
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 1.6e-58 230.3 225 52.9
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 4.0e-57 225.7 252 48.4
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 2.9e-55 219.5 225 51.6
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.1e-54 217.6 260 44.6
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 3.2e-54 216.1 221 51.1
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 4.6e-53 212.2 196 54.1
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.3e-52 209.9 256 43.8
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 9.6e-51 204.5 174 57.5
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.6e-50 203.8 183 55.7
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 4.7e-50 202.2 256 45.3
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 6.0e-45 185.3 222 43.7
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 3.0e-44 183.0 179 51.4
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 4.0e-41 172.6 179 47.5
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.9e-39 166.4 217 44.2
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 6.4e-39 165.2 145 55.9
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 4.2e-38 162.5 255 39.6
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.8e-34 149.8 137 55.5
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.8e-33 147.1 122 59.8
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 1.2e-32 144.4 150 48.0
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 2.5e-30 136.7 225 36.0
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 9.3e-30 134.8 122 57.4
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.1e-27 127.9 108 58.3
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 9.6e-27 124.8 266 34.2
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 1.2e-24 117.9 108 55.6
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 2.9e-23 113.2 172 33.7
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 6.5e-23 112.1 184 38.0
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 1.8e-20 104.0 111 47.7
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 1.1e-19 101.3 103 49.5
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 3.3e-19 99.8 102 49.0
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 5.1e-12 75.9 111 38.7
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 4.3e-11 72.8 124 38.7
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 1.1e-09 68.2 83 43.4


User provided reference genes

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