Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 7.8e-215 750.4 427 100.0
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 2.1e-87 327.0 196 82.7
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 3.6e-87 326.2 198 82.3
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 8.1e-87 325.1 197 81.7
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 8.1e-87 325.1 198 80.8
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 1.1e-86 324.7 196 81.6
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 1.1e-86 324.7 199 80.9
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 1.4e-86 324.3 196 80.6
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 1.8e-86 323.9 198 81.8
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.4e-86 323.6 196 80.1
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 2.4e-86 323.6 196 81.6
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 3.1e-86 323.2 199 80.4
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 4.0e-86 322.8 198 80.8
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 5.3e-86 322.4 198 79.8
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 5.3e-86 322.4 196 80.6
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 5.3e-86 322.4 198 80.8
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 5.3e-86 322.4 196 79.6
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 5.3e-86 322.4 196 80.6
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 5.3e-86 322.4 196 80.6
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 6.9e-86 322.0 198 80.3
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 6.9e-86 322.0 196 81.1
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 9.0e-86 321.6 196 79.6
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 9.0e-86 321.6 196 81.6
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.2e-85 321.2 196 80.1
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 1.2e-85 321.2 196 80.6
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.2e-85 321.2 195 80.5
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.5e-85 320.9 196 80.1
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 2.0e-85 320.5 196 80.1
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 2.0e-85 320.5 196 80.1
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 2.0e-85 320.5 196 80.1
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 2.0e-85 320.5 196 81.1
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 2.0e-85 320.5 196 80.1
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 2.0e-85 320.5 202 78.2
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 2.6e-85 320.1 196 80.1
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 2.6e-85 320.1 196 80.1
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 2.6e-85 320.1 196 80.1
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 2.6e-85 320.1 196 80.6
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 2.6e-85 320.1 196 80.6
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 3.4e-85 319.7 196 80.1
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 3.4e-85 319.7 196 79.6
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 3.4e-85 319.7 198 79.8
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 3.4e-85 319.7 196 80.6
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 5.8e-85 318.9 196 80.1
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 9.9e-85 318.2 198 80.3
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.3e-84 317.8 196 79.6
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.3e-84 317.8 196 81.1
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 1.3e-84 317.8 196 80.1
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 1.3e-84 317.8 196 80.6
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.3e-84 317.8 196 80.1
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 1.3e-84 317.8 196 79.1
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 1.3e-84 317.8 196 78.6
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 1.7e-84 317.4 196 79.6
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 2.2e-84 317.0 196 79.6
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 2.2e-84 317.0 196 80.6
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 2.2e-84 317.0 196 79.6
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 2.9e-84 316.6 198 78.8
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.9e-84 316.6 196 80.1
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 2.9e-84 316.6 196 80.1
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 2.9e-84 316.6 196 79.1
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 2.9e-84 316.6 196 79.6
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 2.9e-84 316.6 197 78.7
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 3.8e-84 316.2 196 78.6
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 3.8e-84 316.2 196 80.6
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 3.8e-84 316.2 196 78.1
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 4.9e-84 315.8 196 78.6
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 4.9e-84 315.8 196 78.6
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 6.4e-84 315.5 196 79.6
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 6.4e-84 315.5 196 80.1
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 6.4e-84 315.5 196 79.6
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 8.4e-84 315.1 196 79.6
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 8.4e-84 315.1 196 79.6
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.1e-83 314.7 196 79.1
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 1.1e-83 314.7 196 79.1
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 1.9e-83 313.9 196 78.6
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.9e-83 313.9 195 77.9
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 1.9e-83 313.9 196 78.6
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 1.9e-83 313.9 196 78.6
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 2.4e-83 313.5 197 80.2
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 2.4e-83 313.5 196 78.6
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 3.2e-83 313.2 196 78.1
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 3.2e-83 313.2 196 81.1
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 5.4e-83 312.4 191 79.1
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 5.4e-83 312.4 196 78.6
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.6e-82 310.8 196 78.6
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 2.1e-82 310.5 196 77.6
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 2.7e-82 310.1 196 77.0
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 2.7e-82 310.1 196 78.6
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 4.6e-82 309.3 194 77.8
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 7.8e-82 308.5 196 77.6
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 1.3e-81 307.8 188 78.7
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 3.0e-81 306.6 188 79.3
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 3.9e-81 306.2 201 77.1
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 3.9e-81 306.2 188 78.7
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 3.9e-81 306.2 188 79.3
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 3.9e-81 306.2 200 77.0
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 6.6e-81 305.4 188 79.8
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.1e-80 304.7 188 79.3
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 1.5e-80 304.3 196 77.0
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.5e-80 304.3 188 79.3
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.5e-80 304.3 190 78.4
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.9e-80 303.9 198 75.3
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.9e-80 303.9 198 75.3
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 2.5e-80 303.5 188 79.3
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.5e-80 303.5 190 77.4
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 2.5e-80 303.5 192 78.1
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 3.3e-80 303.1 188 78.2
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.3e-80 302.8 190 77.4
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 4.3e-80 302.8 193 76.7
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 7.3e-80 302.0 188 77.7
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.6e-79 300.8 195 76.4
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 6.2e-79 298.9 196 74.0
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 1.8e-78 297.4 212 72.2
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 2.4e-78 297.0 195 76.4
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 2.0e-77 293.9 196 74.0
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 8.4e-76 288.5 193 75.6
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 9.3e-75 285.0 162 84.6
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.2e-74 284.6 230 66.1
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.6e-71 274.2 235 61.7
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 2.1e-71 273.9 160 83.8
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 2.8e-71 273.5 188 73.9
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 1.1e-70 271.6 197 70.1
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 6.9e-70 268.9 192 72.4
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.8e-68 263.1 206 66.0
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.5e-67 260.4 193 69.4
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 6.0e-66 255.8 196 67.3
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 5.1e-65 252.7 196 67.9
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 8.7e-65 251.9 148 81.8
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 3.3e-64 250.0 190 68.4
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 2.1e-63 247.3 153 77.1
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.8e-63 246.9 157 77.7
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.8e-63 246.9 151 79.5
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 2.8e-63 246.9 196 66.8
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 3.7e-63 246.5 188 67.0
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 6.2e-63 245.7 162 75.9
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 8.2e-63 245.4 190 67.9
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 2.4e-62 243.8 152 78.3
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 6.9e-62 242.3 152 77.6
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.0e-61 240.7 158 74.1
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.2e-60 237.3 153 73.9
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.9e-59 234.2 149 77.2
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 3.0e-57 226.9 198 64.1
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.1e-56 224.9 201 62.2
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 6.3e-55 219.2 195 51.8
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 8.2e-55 218.8 132 80.3
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 1.0e-52 211.8 195 62.1
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 2.9e-52 210.3 133 75.2
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 1.0e-49 201.8 165 65.5
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 3.0e-49 200.3 153 68.0
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 6.3e-39 166.0 106 74.5
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 9.1e-38 162.2 288 38.5
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 1.0e-36 158.7 106 71.7
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 1.7e-36 157.9 106 71.7
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 3.0e-33 147.1 188 41.5
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 6.7e-33 146.0 224 40.6
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 1.7e-31 141.4 206 38.3
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 2.4e-30 137.5 148 50.0
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 3.5e-29 133.7 84 81.0
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 2.2e-20 104.4 62 79.0
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 1.1e-19 102.1 62 77.4
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 4.4e-16 90.1 59 74.6
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 2.6e-08 64.3 53 62.3
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 5.7e-08 63.2 36 77.8
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 1.3e-07 62.0 118 34.7
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 1.8e-06 58.2 32 81.2
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.4e-06 57.8 36 66.7


User provided reference genes

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