Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 0.0e+00 1410.2 889 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 3.8e-166 589.7 833 44.1
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 8.7e-163 578.6 892 42.4
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 2.6e-159 567.0 884 41.9
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 4.6e-156 556.2 870 40.7
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 1.9e-154 550.8 890 40.3
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 5.6e-154 549.3 870 41.0
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 4.0e-152 543.1 870 40.2
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 7.6e-151 538.9 892 40.5
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 7.6e-151 538.9 870 39.7
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 2.9e-150 537.0 892 40.1
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 2.9e-150 537.0 879 39.8
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 1.4e-149 534.6 878 39.6
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 3.2e-149 533.5 893 40.4
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.0e-148 529.3 870 39.2
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 1.3e-147 528.1 870 39.9
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 9.6e-146 521.9 892 39.8
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 2.1e-145 520.8 887 39.2
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 6.2e-145 519.2 870 39.2
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 1.1e-144 518.5 869 39.7
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 1.1e-144 518.5 870 39.2
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 1.4e-144 518.1 893 39.2
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 2.4e-144 517.3 878 39.3
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 3.1e-144 516.9 892 38.5
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 4.0e-144 516.5 870 39.2
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 4.0e-144 516.5 889 38.1
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 6.9e-144 515.8 894 38.5
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 9.0e-144 515.4 873 38.6
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 1.2e-143 515.0 896 38.5
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 1.2e-143 515.0 874 39.1
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 2.6e-143 513.8 892 38.2
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 2.6e-143 513.8 879 38.7
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 3.4e-143 513.5 875 38.6
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 3.4e-143 513.5 896 38.3
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 4.5e-143 513.1 870 39.7
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 4.5e-143 513.1 896 38.8
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 4.5e-143 513.1 878 38.5
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 5.8e-143 512.7 870 39.7
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 1.7e-142 511.1 870 39.3
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.7e-142 511.1 871 39.2
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 1.7e-142 511.1 915 37.9
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.2e-142 510.8 877 38.8
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 2.2e-142 510.8 892 38.7
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 2.2e-142 510.8 896 38.5
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 2.2e-142 510.8 894 39.3
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 2.2e-142 510.8 876 39.5
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 2.9e-142 510.4 894 38.1
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 2.9e-142 510.4 870 39.2
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.9e-142 510.4 895 38.4
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.9e-142 510.4 878 38.2
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 2.9e-142 510.4 885 38.3
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 3.8e-142 510.0 870 38.6
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 4.9e-142 509.6 870 39.2
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 6.5e-142 509.2 897 38.0
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 8.4e-142 508.8 870 38.3
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 8.4e-142 508.8 895 38.4
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 1.1e-141 508.4 870 39.3
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 3.2e-141 506.9 892 38.9
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 3.2e-141 506.9 877 38.3
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 4.2e-141 506.5 916 38.2
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 7.1e-141 505.8 895 38.4
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 9.3e-141 505.4 824 41.0
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 1.6e-140 504.6 891 37.9
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 1.6e-140 504.6 870 38.7
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 2.1e-140 504.2 870 39.1
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.1e-140 504.2 895 38.1
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 2.7e-140 503.8 894 39.4
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 3.5e-140 503.4 875 39.3
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 6.0e-140 502.7 891 37.5
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.0e-139 501.9 895 38.0
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 1.8e-139 501.1 894 38.6
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 3.0e-139 500.4 873 38.6
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 3.9e-139 500.0 877 38.8
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 5.1e-139 499.6 887 38.4
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 1.1e-138 498.4 893 38.2
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.5e-138 498.0 873 39.4
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 2.5e-138 497.3 897 38.5
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 4.3e-138 496.5 876 38.4
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 9.6e-138 495.4 891 38.6
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 1.3e-137 495.0 894 37.2
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.6e-137 494.6 897 37.7
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 3.7e-137 493.4 875 38.3
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 6.3e-137 492.7 872 38.8
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 1.4e-136 491.5 877 38.0
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 2.4e-136 490.7 896 36.9
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 5.3e-136 489.6 877 38.2
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 6.9e-136 489.2 877 38.2
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 9.0e-136 488.8 899 37.4
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 2.6e-135 487.3 881 37.9
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 7.6e-135 485.7 874 37.3
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 2.9e-134 483.8 878 37.7
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 2.9e-134 483.8 919 37.8
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 2.9e-134 483.8 891 38.0
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 6.5e-134 482.6 874 38.3
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 1.9e-133 481.1 821 38.4
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 7.2e-133 479.2 875 37.8
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 1.6e-132 478.0 875 37.6
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 2.1e-132 477.6 896 36.2
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 2.7e-132 477.2 873 37.3
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.0e-131 475.3 870 36.4
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 3.9e-131 473.4 859 37.6
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 3.9e-131 473.4 887 37.2
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 3.3e-130 470.3 876 37.1
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 3.7e-129 466.8 822 38.1
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 3.1e-128 463.8 827 38.5
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 1.2e-127 461.8 874 37.1
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 1.3e-126 458.4 891 36.6
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 2.3e-123 447.6 878 36.6
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 3.9e-123 446.8 870 35.4
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 6.7e-123 446.0 870 35.5
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 1.1e-122 445.3 709 41.3
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 1.5e-122 444.9 849 38.0
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 2.2e-121 441.0 898 36.3
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.1e-120 438.7 780 38.6
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 2.4e-120 437.6 887 36.0
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 9.4e-117 425.6 874 34.7
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 1.6e-116 424.9 566 47.2
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 4.7e-116 423.3 866 36.4
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 1.4e-115 421.8 832 35.8
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.3e-115 421.0 709 40.6
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.3e-115 421.0 866 36.0
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 3.7e-113 413.7 384 58.3
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 8.2e-113 412.5 897 33.9
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 2.4e-112 411.0 796 36.2
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 4.2e-109 400.2 869 34.4
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 4.4e-106 390.2 829 35.3
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.7e-105 388.3 698 38.5
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 7.0e-104 382.9 688 38.4
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 1.3e-102 378.6 397 52.4
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.4e-99 368.6 788 35.7
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 5.0e-94 350.1 888 32.3
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 2.8e-92 344.4 892 31.7
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 9.5e-77 292.7 306 51.0
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.9e-70 270.8 309 49.2
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 5.2e-67 260.4 397 41.6
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 3.5e-63 247.7 450 39.3
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 2.7e-47 194.9 145 62.8
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 2.9e-33 148.3 123 62.6
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.6e-31 141.0 116 57.8
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 3.7e-28 131.3 243 37.0
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 1.1e-24 119.8 161 41.0
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 3.0e-22 111.7 191 38.2
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 5.3e-19 100.9 88 52.3
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 6.5e-17 94.0 233 29.2
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 1.6e-15 89.4 240 28.3
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 1.4e-14 86.3 65 69.2
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 1.3e-09 69.7 120 34.2
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 2.9e-09 68.6 99 41.4
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 5.0e-09 67.8 123 31.7
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 6.5e-09 67.4 116 32.8
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 6.1e-07 60.8 37 73.0
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 3.9e-06 58.2 41 65.9


User provided reference genes

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