Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 0.0e+00 1385.9 904 100.0
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 3.6e-36 157.9 111 62.2
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 8.1e-36 156.8 108 63.9
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 1.8e-35 155.6 111 64.0
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 4.0e-35 154.5 114 64.0
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 6.8e-35 153.7 109 65.1
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 8.9e-35 153.3 114 62.3
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 2.0e-34 152.1 106 63.2
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 2.6e-34 151.8 109 63.3
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 4.4e-34 151.0 109 63.3
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 4.4e-34 151.0 109 62.4
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 5.8e-34 150.6 113 61.1
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 5.8e-34 150.6 114 61.4
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 5.8e-34 150.6 114 62.3
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 5.8e-34 150.6 113 60.2
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 5.8e-34 150.6 109 61.5
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 5.8e-34 150.6 118 59.3
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 7.6e-34 150.2 109 62.4
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 7.6e-34 150.2 118 59.3
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 1.3e-33 149.4 116 58.6
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 1.7e-33 149.1 113 60.2
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 2.2e-33 148.7 113 59.3
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 2.9e-33 148.3 114 59.6
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 2.9e-33 148.3 113 58.4
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 3.8e-33 147.9 114 61.4
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 4.9e-33 147.5 113 58.4
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 6.4e-33 147.1 113 58.4
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 6.4e-33 147.1 113 58.4
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 6.4e-33 147.1 116 59.5
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 8.4e-33 146.7 113 58.4
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 8.4e-33 146.7 108 62.0
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 8.4e-33 146.7 108 62.0
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 8.4e-33 146.7 113 60.2
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 8.4e-33 146.7 113 58.4
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 1.1e-32 146.4 113 58.4
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 1.1e-32 146.4 113 58.4
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 1.1e-32 146.4 113 61.1
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 1.1e-32 146.4 114 59.6
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.1e-32 146.4 114 58.8
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 1.4e-32 146.0 109 61.5
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 1.4e-32 146.0 109 62.4
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 1.4e-32 146.0 113 58.4
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 1.4e-32 146.0 109 60.6
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 1.9e-32 145.6 113 60.2
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 1.9e-32 145.6 113 57.5
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.9e-32 145.6 113 59.3
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 1.9e-32 145.6 113 61.1
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 1.9e-32 145.6 113 60.2
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 2.4e-32 145.2 113 60.2
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 2.4e-32 145.2 109 61.5
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 3.2e-32 144.8 113 58.4
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 3.2e-32 144.8 113 61.1
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 4.1e-32 144.4 114 59.6
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 4.1e-32 144.4 113 61.1
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 4.1e-32 144.4 118 58.5
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 5.4e-32 144.1 122 58.2
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 5.4e-32 144.1 113 57.5
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 5.4e-32 144.1 123 54.5
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 5.4e-32 144.1 113 58.4
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 5.4e-32 144.1 109 61.5
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 5.4e-32 144.1 114 57.0
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 5.4e-32 144.1 113 60.2
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 7.1e-32 143.7 113 60.2
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 1.2e-31 142.9 124 54.0
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 1.2e-31 142.9 113 56.6
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 1.2e-31 142.9 113 58.4
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 1.2e-31 142.9 113 57.5
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 2.1e-31 142.1 113 55.8
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 2.7e-31 141.7 113 58.4
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 2.7e-31 141.7 122 54.9
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 2.7e-31 141.7 113 58.4
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 3.5e-31 141.4 113 55.8
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 3.5e-31 141.4 113 55.8
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 4.6e-31 141.0 113 58.4
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 6.0e-31 140.6 114 56.1
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 6.0e-31 140.6 113 57.5
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 6.0e-31 140.6 113 55.8
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 6.0e-31 140.6 113 57.5
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 6.0e-31 140.6 114 58.8
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 7.8e-31 140.2 114 57.0
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.0e-30 139.8 113 59.3
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 1.0e-30 139.8 133 52.6
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 1.0e-30 139.8 113 55.8
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 1.3e-30 139.4 113 60.2
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 1.7e-30 139.0 113 57.5
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.7e-30 139.0 113 54.9
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 2.3e-30 138.7 113 58.4
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 2.3e-30 138.7 106 58.5
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 3.0e-30 138.3 109 60.6
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.0e-30 138.3 109 60.6
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.0e-30 138.3 109 59.6
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 3.0e-30 138.3 114 57.9
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 3.9e-30 137.9 113 58.4
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.9e-30 137.9 109 59.6
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 3.9e-30 137.9 109 59.6
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 3.9e-30 137.9 113 57.5
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 3.9e-30 137.9 113 56.6
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 5.1e-30 137.5 113 56.6
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 6.6e-30 137.1 113 54.9
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 8.7e-30 136.7 109 58.7
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 1.5e-29 136.0 109 57.8
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 1.5e-29 136.0 113 57.5
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.9e-29 135.6 114 55.3
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 3.3e-29 134.8 114 55.3
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 3.3e-29 134.8 114 55.3
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 4.3e-29 134.4 128 51.6
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 4.3e-29 134.4 113 57.5
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 5.6e-29 134.0 125 51.2
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 5.6e-29 134.0 106 58.5
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 6.2e-28 130.6 109 54.1
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 1.8e-27 129.0 89 66.3
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 1.8e-27 129.0 143 45.5
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.4e-27 128.6 113 54.9
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.4e-27 128.6 113 54.9
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.4e-27 128.6 113 54.9
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 3.1e-27 128.3 79 69.6
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 3.1e-27 128.3 77 74.0
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 6.9e-27 127.1 94 63.8
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 6.9e-27 127.1 94 63.8
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 1.2e-26 126.3 84 66.7
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 7.6e-26 123.6 77 71.4
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 1.3e-25 122.9 109 55.0
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 6.4e-25 120.6 83 65.1
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 2.4e-24 118.6 83 62.7
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 2.4e-24 118.6 113 51.3
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 3.0e-22 111.7 86 57.0
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 8.7e-22 110.2 83 59.0
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.1e-21 109.8 110 50.0
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 1.8e-19 102.4 77 59.7
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 2.4e-19 102.1 119 40.3
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 4.0e-19 101.3 71 63.4
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 2.6e-18 98.6 74 56.8
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 1.6e-15 89.4 106 45.3
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 1.5e-13 82.8 77 54.5
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 3.3e-13 81.6 122 42.6
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.6e-12 79.3 60 60.0
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 1.5e-10 72.8 87 43.7
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 8.4e-09 67.0 66 48.5
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 3.2e-08 65.1 71 46.5
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 1.2e-07 63.2 67 47.8
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.6e-07 62.8 39 69.2
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.7e-07 62.0 39 69.2
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.7e-07 62.0 39 69.2
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 2.3e-06 58.9 37 70.3
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 8.7e-06 57.0 37 67.6


User provided reference genes

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