Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 8.5e-277 956.4 504 100.0
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 2.9e-224 781.9 430 83.5
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 4.6e-222 774.6 421 84.6
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.3e-221 773.1 421 83.6
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.3e-221 773.1 421 84.1
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 1.7e-221 772.7 421 83.8
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.7e-221 772.7 421 83.8
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.7e-221 772.7 421 84.1
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.3e-221 772.3 421 84.1
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 2.3e-221 772.3 420 84.5
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 3.9e-221 771.5 421 83.6
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.9e-221 771.5 421 84.1
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 3.9e-221 771.5 421 83.6
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 3.9e-221 771.5 421 83.6
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 3.9e-221 771.5 421 83.6
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 5.0e-221 771.2 421 83.6
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 5.0e-221 771.2 421 83.6
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 5.0e-221 771.2 421 83.8
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 6.6e-221 770.8 420 83.6
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 6.6e-221 770.8 421 84.1
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 6.6e-221 770.8 421 84.1
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 8.6e-221 770.4 420 83.8
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 1.1e-220 770.0 421 83.1
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 1.1e-220 770.0 420 84.0
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 1.1e-220 770.0 429 81.8
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.1e-220 770.0 424 83.3
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.1e-220 770.0 421 83.8
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 1.9e-220 769.2 421 83.8
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.9e-220 769.2 421 83.4
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 1.9e-220 769.2 421 83.8
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 3.3e-220 768.5 421 83.6
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 3.3e-220 768.5 421 83.1
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 4.3e-220 768.1 421 83.4
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 4.3e-220 768.1 421 82.9
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 4.3e-220 768.1 420 83.1
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 4.3e-220 768.1 420 83.8
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 4.3e-220 768.1 420 83.8
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 4.3e-220 768.1 421 83.4
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 5.6e-220 767.7 421 83.1
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 5.6e-220 767.7 421 83.4
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 5.6e-220 767.7 421 82.7
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 5.6e-220 767.7 420 83.6
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 7.3e-220 767.3 421 83.4
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 7.3e-220 767.3 420 83.8
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 7.3e-220 767.3 420 84.0
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 9.5e-220 766.9 421 83.1
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 9.5e-220 766.9 421 83.4
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 1.6e-219 766.1 420 82.9
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 1.6e-219 766.1 421 83.4
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 2.1e-219 765.8 420 83.3
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 2.1e-219 765.8 421 83.1
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 2.1e-219 765.8 421 82.7
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 2.1e-219 765.8 428 82.2
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 2.1e-219 765.8 421 83.6
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 2.1e-219 765.8 421 83.1
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 2.8e-219 765.4 424 82.8
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 2.8e-219 765.4 421 83.1
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.8e-219 765.4 420 83.6
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.8e-219 765.4 421 83.4
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 3.6e-219 765.0 421 83.1
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 3.6e-219 765.0 420 83.6
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 3.6e-219 765.0 420 83.6
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 4.7e-219 764.6 421 82.7
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 4.7e-219 764.6 421 83.4
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 6.2e-219 764.2 420 82.9
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 6.2e-219 764.2 420 83.6
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 6.2e-219 764.2 420 83.3
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 8.1e-219 763.8 424 82.5
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 1.1e-218 763.5 421 83.1
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 1.4e-218 763.1 421 82.9
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 1.4e-218 763.1 421 82.9
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 1.8e-218 762.7 421 82.9
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 1.8e-218 762.7 421 83.6
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 2.3e-218 762.3 421 82.9
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 3.1e-218 761.9 420 82.6
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 5.2e-218 761.1 421 83.1
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 5.2e-218 761.1 424 82.5
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 6.8e-218 760.8 421 82.9
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 6.8e-218 760.8 421 82.7
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 6.8e-218 760.8 421 82.9
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 1.2e-217 760.0 421 82.7
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 1.2e-217 760.0 421 82.7
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 1.2e-217 760.0 421 82.7
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 1.2e-217 760.0 421 82.7
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 1.2e-217 760.0 421 82.7
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 1.2e-217 760.0 421 82.4
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 1.2e-217 760.0 421 81.9
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 1.2e-217 760.0 421 83.4
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 1.2e-217 760.0 421 83.4
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 1.2e-217 760.0 420 82.6
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.5e-217 759.6 421 82.7
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 1.5e-217 759.6 421 82.4
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 1.5e-217 759.6 421 82.4
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 1.5e-217 759.6 421 82.9
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 1.5e-217 759.6 421 83.1
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 1.5e-217 759.6 426 82.4
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 1.5e-217 759.6 421 82.7
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 2.0e-217 759.2 421 82.4
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 2.6e-217 758.8 420 82.1
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 3.4e-217 758.4 421 82.4
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 4.4e-217 758.1 420 82.9
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 4.4e-217 758.1 421 82.7
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 5.8e-217 757.7 421 82.2
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 9.8e-217 756.9 421 82.4
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 9.8e-217 756.9 424 81.4
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 9.8e-217 756.9 421 82.2
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 1.3e-216 756.5 420 82.4
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 1.3e-216 756.5 424 81.8
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 1.3e-216 756.5 424 81.8
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 2.2e-216 755.7 421 81.9
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 3.7e-216 755.0 421 82.2
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 5.4e-215 751.1 424 80.7
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 7.1e-215 750.7 422 81.3
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 9.2e-215 750.4 420 80.2
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 4.6e-214 748.0 421 80.0
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 6.0e-214 747.7 439 77.7
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 1.4e-210 736.5 420 80.7
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 5.2e-210 734.6 405 82.5
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 5.8e-209 731.1 423 79.2
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 1.3e-208 729.9 428 76.9
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 1.6e-206 723.0 397 83.1
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 3.5e-206 721.8 396 83.1
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 2.3e-205 719.2 401 81.8
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 2.3e-205 719.2 396 83.1
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 6.6e-205 717.6 400 81.8
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 1.5e-196 689.9 371 85.2
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 6.9e-186 654.4 421 72.9
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 8.4e-184 647.5 352 84.1
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 1.4e-178 630.2 400 72.2
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.8e-176 622.1 338 84.3
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 3.0e-173 612.5 420 70.0
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.4e-170 602.8 344 80.8
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 6.9e-162 574.7 314 83.4
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 8.8e-157 557.8 305 83.6
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 9.4e-143 511.1 277 84.8
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.7e-142 508.8 421 60.8
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.8e-139 499.6 279 82.4
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.3e-136 490.7 421 59.6
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.0e-136 488.8 421 59.4
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.2e-135 486.1 421 59.1
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.2e-124 451.1 351 63.2
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 1.0e-117 427.9 275 72.4
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.2e-99 367.1 203 82.8
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.5e-92 344.4 191 81.7
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.7e-91 340.9 175 88.0
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 5.8e-76 289.3 162 80.9
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 2.4e-74 283.9 160 78.8
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 7.9e-65 252.3 146 76.0
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 4.3e-63 246.5 146 78.8
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 1.5e-60 238.0 127 84.3
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 3.7e-54 216.9 261 43.7
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 9.3e-50 202.2 116 79.3
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.2e-49 201.8 420 32.4
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 1.6e-49 201.4 108 83.3
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.9e-43 180.6 102 79.4
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 7.2e-42 176.0 100 77.0
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 5.7e-39 166.4 92 81.5
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 1.1e-26 125.6 196 35.7
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 2.1e-25 121.3 102 58.8
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.6e-25 120.6 72 73.6
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 1.3e-22 112.1 66 77.3
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 1.3e-22 112.1 66 77.3
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.4e-21 108.6 68 73.5
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.7e-20 104.4 65 70.8
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.7e-20 104.4 65 70.8
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 1.7e-19 101.7 60 75.0
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.2e-19 101.3 59 78.0
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 6.5e-19 99.8 58 79.3
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.5e-18 97.8 59 74.6
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.6e-17 95.1 55 78.2
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.6e-17 94.0 55 76.4
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 5.2e-16 90.1 48 83.3
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 5.2e-16 90.1 53 75.5
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 1.3e-14 85.5 82 52.4
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 7.2e-10 69.7 71 49.3
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 6.1e-09 66.6 72 48.6
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 1.4e-08 65.5 72 48.6
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 1.7e-06 58.5 163 31.3
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 2.8e-06 57.8 60 50.0


User provided reference genes

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