Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 4.7e-146 521.2 261 100.0
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 87.4
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 2.3e-129 465.7 261 87.0
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 1.5e-128 463.0 261 85.4
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 4.4e-128 461.5 261 85.4
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 8.4e-127 457.2 261 84.7
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.9e-126 456.1 261 83.9
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 4.1e-126 454.9 261 84.7
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 4.1e-126 454.9 260 84.2
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 5.4e-126 454.5 261 84.3
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 9.2e-126 453.8 261 83.9
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 1.2e-125 453.4 261 83.9
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.1e-125 452.6 261 83.9
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 2.1e-125 452.6 261 83.9
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 2.1e-125 452.6 261 83.5
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 2.7e-125 452.2 261 83.5
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 2.7e-125 452.2 261 83.9
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 3.5e-125 451.8 261 83.5
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 83.1
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 83.1
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 83.1
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 7.8e-125 450.7 261 83.9
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 7.8e-125 450.7 261 83.5
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 1.0e-124 450.3 261 84.3
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 1.0e-124 450.3 261 84.3
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 1.0e-124 450.3 261 83.9
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 1.0e-124 450.3 261 83.5
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 1.3e-124 449.9 261 82.8
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 1.3e-124 449.9 261 82.8
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.3e-124 449.9 261 82.8
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 1.3e-124 449.9 261 83.5
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 1.3e-124 449.9 261 82.8
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 2.3e-124 449.1 261 83.1
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 2.3e-124 449.1 260 83.8
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 3.0e-124 448.7 261 83.5
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 5.1e-124 448.0 261 83.1
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 5.1e-124 448.0 261 83.1
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 6.6e-124 447.6 261 82.8
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 6.6e-124 447.6 261 82.8
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 6.6e-124 447.6 261 82.4
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 8.6e-124 447.2 261 82.8
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 8.6e-124 447.2 261 82.8
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.1e-123 446.8 261 82.8
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.1e-123 446.8 261 82.4
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.5e-123 446.4 261 82.8
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.5e-123 446.4 261 83.5
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 1.9e-123 446.0 261 83.5
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.9e-123 446.0 261 82.4
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 1.9e-123 446.0 261 82.4
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 1.9e-123 446.0 260 82.7
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.9e-123 446.0 261 83.5
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.9e-123 446.0 261 82.0
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 1.9e-123 446.0 265 81.9
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 1.9e-123 446.0 261 82.4
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 2.5e-123 445.7 261 82.8
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 2.5e-123 445.7 261 82.8
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 2.5e-123 445.7 261 83.1
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.5e-123 445.7 261 82.8
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.5e-123 445.7 261 82.8
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 3.3e-123 445.3 261 82.0
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 3.3e-123 445.3 260 82.7
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 4.3e-123 444.9 261 81.2
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 4.3e-123 444.9 261 82.0
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 5.6e-123 444.5 261 83.1
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 5.6e-123 444.5 261 83.1
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 5.6e-123 444.5 261 82.0
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 7.3e-123 444.1 261 82.0
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 7.3e-123 444.1 261 82.0
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 7.3e-123 444.1 261 81.6
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 7.3e-123 444.1 261 82.0
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 7.3e-123 444.1 261 82.8
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 7.3e-123 444.1 260 82.3
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 9.6e-123 443.7 261 81.6
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 9.6e-123 443.7 256 83.2
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.2e-122 443.4 261 82.4
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 1.6e-122 443.0 261 82.0
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 1.6e-122 443.0 261 81.6
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 1.6e-122 443.0 261 82.0
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 2.1e-122 442.6 261 81.6
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 2.1e-122 442.6 261 81.2
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 2.1e-122 442.6 260 81.9
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 2.1e-122 442.6 261 82.0
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 2.8e-122 442.2 258 82.9
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 6.2e-122 441.0 261 82.8
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 1.1e-121 440.3 261 81.2
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 1.4e-121 439.9 261 82.0
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.8e-121 439.5 261 82.0
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 1.8e-121 439.5 261 81.6
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 1.8e-121 439.5 261 81.2
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 2.4e-121 439.1 261 81.6
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 2.4e-121 439.1 261 81.2
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 3.1e-121 438.7 259 82.2
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 4.0e-121 438.3 261 80.8
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 4.0e-121 438.3 261 81.6
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 5.2e-121 438.0 261 81.2
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 6.8e-121 437.6 260 81.9
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 8.9e-121 437.2 261 81.2
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 1.5e-120 436.4 261 80.8
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 1.5e-120 436.4 261 80.5
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 1.5e-120 436.4 261 79.7
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 2.0e-120 436.0 261 80.5
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 2.6e-120 435.6 269 79.2
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 3.4e-120 435.3 261 80.8
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 5.8e-120 434.5 261 80.5
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 7.6e-120 434.1 261 81.2
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 2.2e-119 432.6 264 81.1
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 2.2e-119 432.6 261 82.0
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 2.9e-119 432.2 261 80.5
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 8.4e-119 430.6 261 80.5
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 1.9e-118 429.5 261 79.3
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 2.4e-118 429.1 261 79.7
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.4e-118 429.1 277 76.9
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 3.2e-118 428.7 261 79.3
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 3.2e-118 428.7 261 79.3
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 3.2e-118 428.7 261 79.7
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 3.2e-118 428.7 285 75.8
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 5.4e-118 427.9 261 78.9
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 9.3e-118 427.2 260 79.2
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 9.3e-118 427.2 260 79.2
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.2e-117 426.8 261 79.7
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 4.6e-117 424.9 260 78.8
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 7.8e-117 424.1 259 79.2
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 7.8e-117 424.1 259 79.2
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 7.8e-117 424.1 261 79.7
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.3e-116 423.3 261 79.7
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 1.7e-116 422.9 261 78.5
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 5.1e-116 421.4 261 79.7
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 8.7e-116 420.6 261 79.3
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.5e-115 419.9 256 79.3
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 1.3e-114 416.8 276 76.4
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 2.8e-114 415.6 261 77.4
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 3.1e-113 412.1 240 83.3
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 4.0e-113 411.8 261 78.2
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 4.4e-112 408.3 241 81.3
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.3e-111 406.8 241 80.9
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.4e-110 403.3 266 78.2
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 1.0e-108 397.1 261 75.1
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 1.0e-108 397.1 261 75.1
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.6e-104 382.5 261 74.3
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 2.9e-103 379.0 213 85.0
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 8.4e-103 377.5 261 73.6
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.3e-100 370.2 309 64.7
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 5.1e-100 368.2 261 72.0
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.1e-99 367.1 337 58.5
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 1.5e-99 366.7 222 80.2
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 2.8e-98 362.5 240 73.8
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 8.1e-98 360.9 201 85.1
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 2.0e-96 356.3 252 70.6
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 2.0e-96 356.3 195 87.2
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 8.2e-90 334.3 260 63.8
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 2.6e-88 329.3 198 79.8
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.0e-84 317.4 259 66.4
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.8e-82 309.3 177 81.4
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 4.1e-81 305.4 161 88.8
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 2.0e-75 286.6 230 63.5
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 1.8e-65 253.4 240 57.9
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 7.7e-56 221.5 113 91.2
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.3e-50 204.1 135 75.6
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 2.8e-50 203.0 143 71.3
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 1.4e-49 200.7 142 70.4
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 2.9e-47 193.0 98 89.8
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 6.6e-39 165.2 108 74.1
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 9.5e-38 161.4 109 72.5
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 1.6e-37 160.6 92 83.7
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 2.8e-37 159.8 196 49.0
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 1.4e-36 157.5 135 60.7
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 1.8e-36 157.1 271 40.6
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 1.1e-30 137.9 197 44.2
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 1.4e-25 120.9 100 64.0
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 1.9e-25 120.6 81 75.3
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 6.6e-23 112.1 92 59.8
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.8e-20 104.0 111 55.0
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 2.7e-16 90.1 64 68.8
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 1.6e-08 64.3 81 44.4
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 1.7e-07 60.8 56 57.1
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 1.7e-07 60.8 35 77.1
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 3.0e-07 60.1 52 63.5
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 1.9e-06 57.4 62 53.2


User provided reference genes

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