Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 3.1e-33 144.8 89 100.0
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 6.1e-29 130.6 88 85.2
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 1.3e-26 122.9 89 89.9
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 9.1e-25 116.7 89 75.3
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 4.5e-24 114.4 90 78.9
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 1.0e-23 113.2 89 69.7
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 1.2e-21 106.3 83 66.3
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 1.2e-21 106.3 83 66.3
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 1.2e-21 106.3 83 66.3
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 1.2e-21 106.3 83 66.3
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 2.7e-21 105.1 82 82.9
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 3.6e-21 104.8 83 79.5
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 1.3e-18 96.3 78 61.5
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 1.7e-18 95.9 76 65.8
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 1.7e-18 95.9 88 55.7
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 1.7e-18 95.9 51 84.3
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 4.8e-18 94.4 76 63.2
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 6.3e-18 94.0 74 64.9
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 8.3e-18 93.6 91 54.9
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 8.3e-18 93.6 73 65.8
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 1.1e-17 93.2 85 61.2
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.1e-17 93.2 52 80.8
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 1.1e-17 93.2 52 80.8
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 1.4e-17 92.8 74 63.5
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 1.4e-17 92.8 89 69.7
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 1.8e-17 92.4 76 61.8
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 2.4e-17 92.0 85 62.4
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 2.4e-17 92.0 52 80.8
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 2.4e-17 92.0 88 53.4
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 2.4e-17 92.0 75 62.7
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 3.1e-17 91.7 72 65.3
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 3.1e-17 91.7 52 76.9
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 4.1e-17 91.3 92 52.2
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 4.1e-17 91.3 51 80.4
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 5.4e-17 90.9 52 80.8
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 5.4e-17 90.9 86 59.3
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.4e-17 90.9 51 80.4
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 5.4e-17 90.9 52 78.8
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 5.4e-17 90.9 52 78.8
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 7.0e-17 90.5 52 76.9
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 7.0e-17 90.5 76 61.8
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 7.0e-17 90.5 52 75.0
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 9.1e-17 90.1 76 61.8
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 9.1e-17 90.1 51 78.4
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 9.1e-17 90.1 51 78.4
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 9.1e-17 90.1 51 78.4
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 9.1e-17 90.1 76 61.8
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 9.1e-17 90.1 76 61.8
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 1.2e-16 89.7 76 60.5
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 1.2e-16 89.7 51 78.4
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 1.6e-16 89.4 86 57.0
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 1.6e-16 89.4 51 78.4
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.6e-16 89.4 51 78.4
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.6e-16 89.4 51 78.4
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.6e-16 89.4 51 78.4
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.6e-16 89.4 51 78.4
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.6e-16 89.4 51 78.4
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 1.6e-16 89.4 52 75.0
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 1.6e-16 89.4 52 75.0
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 1.6e-16 89.4 52 78.8
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 2.0e-16 89.0 52 76.9
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 2.0e-16 89.0 52 75.0
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 2.0e-16 89.0 76 59.2
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 2.0e-16 89.0 78 60.3
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 2.7e-16 88.6 52 75.0
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 2.7e-16 88.6 52 75.0
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 2.7e-16 88.6 52 76.9
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 2.7e-16 88.6 52 76.9
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 2.7e-16 88.6 52 75.0
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 2.7e-16 88.6 52 73.1
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 3.5e-16 88.2 52 75.0
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 3.5e-16 88.2 51 76.5
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 3.5e-16 88.2 52 76.9
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 3.5e-16 88.2 52 76.9
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 3.5e-16 88.2 92 52.2
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 3.5e-16 88.2 51 72.5
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 3.5e-16 88.2 51 72.5
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 4.5e-16 87.8 92 52.2
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 4.5e-16 87.8 52 73.1
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 7.7e-16 87.0 76 57.9
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 7.7e-16 87.0 52 76.9
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 7.7e-16 87.0 52 73.1
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 7.7e-16 87.0 51 72.5
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 7.7e-16 87.0 76 59.2
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 1.0e-15 86.7 52 75.0
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 1.0e-15 86.7 51 72.5
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 1.3e-15 86.3 52 76.9
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 1.3e-15 86.3 51 76.5
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.3e-15 86.3 51 76.5
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 2.3e-15 85.5 52 73.1
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 2.3e-15 85.5 52 73.1
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 2.3e-15 85.5 52 69.2
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 3.8e-15 84.7 52 75.0
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 3.8e-15 84.7 76 55.3
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 3.8e-15 84.7 51 76.5
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 3.8e-15 84.7 76 57.9
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 3.8e-15 84.7 51 72.5
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 5.0e-15 84.3 76 53.9
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 6.6e-15 84.0 76 59.2
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 8.6e-15 83.6 52 71.2
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 8.6e-15 83.6 52 69.2
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 1.1e-14 83.2 52 75.0
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 1.1e-14 83.2 52 75.0
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 1.5e-14 82.8 76 56.6
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 2.5e-14 82.0 52 71.2
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 2.5e-14 82.0 44 77.3
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 2.5e-14 82.0 76 56.6
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 2.5e-14 82.0 84 48.8
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 2.5e-14 82.0 49 75.5
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 3.3e-14 81.6 52 71.2
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 3.3e-14 81.6 52 69.2
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 4.2e-14 81.3 52 71.2
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 4.2e-14 81.3 52 69.2
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 7.2e-14 80.5 52 71.2
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 7.2e-14 80.5 52 67.3
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 9.5e-14 80.1 76 53.9
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 1.2e-13 79.7 52 71.2
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 1.6e-13 79.3 52 67.3
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 2.8e-13 78.6 51 72.5
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 4.7e-13 77.8 51 70.6
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 6.1e-13 77.4 45 75.6
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 6.1e-13 77.4 76 53.9
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 8.0e-13 77.0 52 67.3
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 1.0e-12 76.6 52 71.2
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.0e-12 76.6 51 66.7
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 4.0e-12 74.7 45 71.1
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 8.9e-12 73.6 50 72.0
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 2.4e-09 65.5 52 59.6
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 4.1e-09 64.7 41 63.4
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 2.9e-07 58.5 54 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 8.6e-07 57.0 42 59.5
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 8.6e-07 57.0 42 59.5


User provided reference genes

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