Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 5.6e-33 143.7 72 100.0
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 6.5e-29 130.2 72 91.7
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 5.5e-28 127.1 72 88.9
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 2.1e-27 125.2 72 88.9
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 1.3e-21 105.9 76 71.1
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 2.9e-21 104.8 75 69.3
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 3.8e-21 104.4 69 76.8
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 1.2e-19 99.4 66 77.3
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 1.2e-19 99.4 60 78.3
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 4.6e-19 97.4 60 76.7
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 7.9e-19 96.7 72 69.4
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 7.9e-19 96.7 67 65.7
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 1.3e-18 95.9 58 75.9
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 1.8e-18 95.5 77 63.6
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 1.8e-18 95.5 72 69.4
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 3.0e-18 94.7 75 65.3
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 3.9e-18 94.4 58 77.6
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 3.9e-18 94.4 70 70.0
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 3.9e-18 94.4 60 75.0
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 5.1e-18 94.0 58 75.9
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 6.7e-18 93.6 55 81.8
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 6.7e-18 93.6 55 81.8
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 6.7e-18 93.6 60 73.3
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 8.7e-18 93.2 76 61.8
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 1.1e-17 92.8 70 68.6
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 1.1e-17 92.8 58 74.1
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 1.5e-17 92.4 55 80.0
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 1.5e-17 92.4 55 80.0
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 1.5e-17 92.4 55 80.0
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 1.5e-17 92.4 75 61.3
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 2.5e-17 91.7 56 78.6
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 2.5e-17 91.7 60 75.0
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 3.3e-17 91.3 64 68.8
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 4.3e-17 90.9 71 63.4
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 5.7e-17 90.5 58 75.9
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 7.4e-17 90.1 58 75.9
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 7.4e-17 90.1 61 70.5
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 9.7e-17 89.7 61 67.2
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 9.7e-17 89.7 61 68.9
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 9.7e-17 89.7 61 68.9
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 9.7e-17 89.7 61 68.9
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 9.7e-17 89.7 61 68.9
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 1.3e-16 89.4 61 70.5
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 1.6e-16 89.0 72 62.5
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 1.6e-16 89.0 61 68.9
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 2.2e-16 88.6 60 70.0
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.8e-16 88.2 61 67.2
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 3.7e-16 87.8 58 70.7
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 3.7e-16 87.8 56 73.2
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 4.8e-16 87.4 73 58.9
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 6.3e-16 87.0 73 58.9
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 6.3e-16 87.0 60 65.0
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 8.2e-16 86.7 75 58.7
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 4.1e-15 84.3 60 66.7
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 5.3e-15 84.0 60 60.0
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 5.3e-15 84.0 60 60.0
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 5.3e-15 84.0 56 69.6
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 5.3e-15 84.0 68 60.3
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 5.3e-15 84.0 58 70.7
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 5.3e-15 84.0 64 59.4
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 6.9e-15 83.6 69 59.4
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 6.9e-15 83.6 68 60.3
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 9.0e-15 83.2 60 61.7
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 1.2e-14 82.8 60 61.7
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 1.5e-14 82.4 60 65.0
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 1.5e-14 82.4 60 61.7
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 2.0e-14 82.0 57 64.9
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 2.6e-14 81.6 63 63.5
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 4.5e-14 80.9 70 55.7
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 4.5e-14 80.9 73 56.2
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 4.5e-14 80.9 89 52.8
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 1.7e-13 79.0 61 60.7
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 3.8e-13 77.8 61 62.3
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 5.0e-13 77.4 74 51.4
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 5.0e-13 77.4 60 56.7
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 6.5e-13 77.0 58 56.9
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 6.5e-13 77.0 68 57.4
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 8.5e-13 76.6 58 62.1
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 2.5e-12 75.1 61 57.4
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 2.5e-12 75.1 73 49.3
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 7.2e-12 73.6 61 54.1
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.7e-11 71.6 97 43.3
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 2.7e-11 71.6 56 58.9
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 3.6e-11 71.2 61 55.7
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 6.1e-11 70.5 39 82.1
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 3.9e-10 67.8 39 76.9
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.7e-10 67.0 91 44.0
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.7e-10 67.0 65 53.8
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 8.8e-10 66.6 39 79.5
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 7.4e-09 63.5 47 61.7
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 2.8e-08 61.6 75 48.0
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 6.3e-08 60.5 38 68.4
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 1.8e-07 58.9 38 65.8
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 9.1e-07 56.6 61 47.5


User provided reference genes

Program Settings