Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 0.0e+00 1254.6 640 100.0
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 1161.0 640 91.1
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 1159.8 640 91.1
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 1153.7 640 90.9
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 1149.8 640 91.1
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1140.6 640 89.2
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1137.9 640 89.7
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1137.9 640 89.7
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1135.9 640 88.8
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1132.1 640 89.2
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1132.1 640 89.2
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1121.3 640 89.2
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1117.4 640 89.1
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1117.4 640 89.1
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1115.9 640 88.9
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 8.7e-303 1043.1 642 81.2
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 3.0e-271 938.3 642 72.4
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 1.5e-270 936.0 644 71.4
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 1.5e-270 936.0 645 72.7
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 5.7e-270 934.1 642 72.3
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 1.4e-268 929.5 644 72.7
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 2.7e-267 925.2 641 72.4
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 1.0e-266 923.3 644 72.7
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 1.9e-265 919.1 642 72.3
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 5.5e-265 917.5 642 72.0
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 4.7e-264 914.4 644 71.9
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 1.4e-263 912.9 642 71.8
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 1.4e-263 912.9 644 71.6
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 1.8e-263 912.5 644 71.6
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 8.8e-263 910.2 642 71.8
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 4.4e-262 907.9 648 71.3
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 3.7e-261 904.8 644 70.3
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 4.8e-261 904.4 641 72.2
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 2.7e-259 898.7 645 69.8
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 3.5e-259 898.3 644 70.3
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 3.8e-258 894.8 646 70.1
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 8.6e-258 893.6 681 67.8
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 2.8e-256 888.6 644 69.9
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 1.0e-255 886.7 647 69.1
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 1.8e-255 885.9 646 70.0
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 8.9e-255 883.6 646 69.8
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 2.6e-254 882.1 643 69.2
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 3.4e-254 881.7 645 70.5
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 9.8e-254 880.2 640 68.6
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 2.8e-253 878.6 640 68.8
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 2.8e-253 878.6 641 70.4
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 2.8e-253 878.6 647 67.2
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 1.4e-252 876.3 645 68.4
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 1.2e-251 873.2 644 68.6
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 2.0e-251 872.5 645 69.8
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 2.7e-251 872.1 645 69.0
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 2.7e-251 872.1 642 68.5
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 2.3e-250 869.0 641 67.2
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 8.6e-250 867.1 640 68.1
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 1.5e-249 866.3 645 69.0
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 1.9e-249 865.9 641 66.8
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 1.2e-248 863.2 645 68.5
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 1.2e-248 863.2 646 67.3
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 3.6e-248 861.7 640 67.5
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 8.0e-248 860.5 642 66.8
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 1.5e-246 856.3 646 67.5
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 2.6e-246 855.5 647 68.0
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 4.4e-246 854.7 642 67.3
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 7.5e-246 854.0 645 68.8
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 7.5e-246 854.0 648 67.4
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 1.3e-245 853.2 647 67.9
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 4.9e-245 851.3 646 67.8
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 1.1e-244 850.1 649 68.0
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 2.4e-244 849.0 645 67.9
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 7.0e-244 847.4 640 66.1
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 2.0e-243 845.9 644 67.1
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 2.7e-243 845.5 642 66.7
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 6.0e-243 844.3 647 66.8
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 2.3e-242 842.4 643 67.0
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 1.1e-241 840.1 647 66.8
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 3.3e-241 838.6 654 65.7
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 5.6e-241 837.8 644 66.6
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 1.8e-239 832.8 641 65.5
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 5.2e-239 831.2 641 65.8
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 8.9e-239 830.5 645 66.2
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 3.4e-238 828.6 643 64.5
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 4.4e-238 828.2 643 66.1
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 3.7e-237 825.1 643 65.3
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 5.4e-236 821.2 641 66.6
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 1.5e-233 813.1 704 60.4
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 3.6e-232 808.5 646 65.0
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 4.4e-230 801.6 650 62.9
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 7.5e-230 800.8 646 63.9
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 1.2e-227 793.5 656 63.0
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 1.0e-226 790.4 620 66.1
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 3.6e-224 781.9 682 60.1
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 1.2e-219 766.9 642 62.5
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.9e-217 759.6 646 63.5
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 2.0e-206 723.0 643 58.6
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 1.5e-201 706.8 643 56.8
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 9.0e-199 697.6 648 57.7
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 2.1e-187 659.8 427 77.8
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 3.1e-183 646.0 586 58.2
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 1.1e-177 627.5 648 51.7
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 4.7e-171 605.5 656 50.2
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 9.7e-169 597.8 668 48.1
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 1.4e-162 577.4 644 49.4
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.2e-157 560.1 434 66.1
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 5.2e-154 548.9 414 66.9
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 1.3e-136 491.1 675 43.0
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 8.3e-136 488.4 395 63.8
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 1.9e-92 344.4 282 61.0
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 6.9e-90 335.9 393 49.6
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 5.6e-84 316.2 256 60.2
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 9.0e-74 282.3 309 51.8
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 5.9e-65 253.1 210 60.5
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 4.2e-55 220.3 120 92.5
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 7.2e-55 219.5 178 61.8
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 7.2e-47 193.0 136 67.6
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 2.9e-40 171.0 113 74.3
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 3.2e-31 141.0 79 88.6
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 4.0e-29 134.0 491 25.9
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 4.4e-28 130.6 70 91.4
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.4e-26 125.6 127 49.6
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 3.8e-24 117.5 117 51.3
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 4.9e-19 100.5 102 55.9
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 3.3e-15 87.8 63 68.3
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 3.2e-10 71.2 51 64.7
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 2.3e-08 65.1 51 62.7
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 2.3e-08 65.1 51 62.7
CsaV3_4G035050 Cucumis sativus L. HOM05D000366 ORTHO05D000437 7.3e-07 60.1 62 45.2
MELO3C016819.2 Cucumis melo HOM05D000366 ORTHO05D000437 2.8e-06 58.2 48 50.0
MELO3C016820.2 Cucumis melo HOM05D000366 ORTHO05D000437 2.8e-06 58.2 48 50.0


User provided reference genes

Program Settings