Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR169750 Cardamine hirsuta HOM05D001098 ORTHO05D116399 8.3e-66 253.8 154 100.0
Sc19g0002170 Simmondsia chinensis HOM05D001098 ORTHO05D003515 8.4e-10 67.8 64 56.2
CANSAT54G1180 Cannabis sativa HOM05D001098 ORTHO05D003515 1.1e-09 67.4 48 68.8
THA.LOC104802300 Tarenaya hassleriana HOM05D001098 ORTHO05D003515 1.4e-09 67.0 62 58.1
EL10Ac3g06301 Beta vulgaris HOM05D001098 ORTHO05D003515 1.9e-09 66.6 48 66.7
PGR083G2776 Punica granatum HOM05D001098 ORTHO05D003515 2.4e-09 66.2 62 58.1
AT2G43240 Arabidopsis thaliana HOM05D001098 ORTHO05D003515 3.2e-09 65.9 62 58.1
ECA233G5431 Erigeron canadensis HOM05D001098 ORTHO05D003515 3.2e-09 65.9 46 69.6
AL4G41900 Arabidopsis lyrata HOM05D001098 ORTHO05D003515 4.2e-09 65.5 62 58.1
AL5G41220 Arabidopsis lyrata HOM05D001098 ORTHO05D003515 4.2e-09 65.5 48 66.7
AT3G59360 Arabidopsis thaliana HOM05D001098 ORTHO05D003515 4.2e-09 65.5 48 66.7
Carub.0005s2609 Capsella rubella HOM05D001098 ORTHO05D003515 4.2e-09 65.5 48 66.7
CARHR169740 Cardamine hirsuta HOM05D001098 ORTHO05D003515 4.2e-09 65.5 48 66.7
Eucgr.A00254 Eucalyptus grandis HOM05D001098 ORTHO05D003515 4.2e-09 65.5 62 56.5
Thhalv10006015m.g Eutrema salsugineum HOM05D001098 ORTHO05D003515 4.2e-09 65.5 48 66.7
Sp5g03760 Schrenkiella parvula HOM05D001098 ORTHO05D003515 4.2e-09 65.5 48 66.7
BcaC02g10053 Brassica carinata HOM05D001098 ORTHO05D003515 5.5e-09 65.1 48 64.6
BolC4t24909H Brassica oleracea HOM05D001098 ORTHO05D003515 5.5e-09 65.1 48 64.6
Ah.13g072980 Amaranthus hybridus HOM05D001098 ORTHO05D003515 7.1e-09 64.7 48 64.6
Potri.008G077300 Populus trichocarpa HOM05D001098 ORTHO05D003515 7.1e-09 64.7 62 58.1
AUR62002604 Chenopodium quinoa HOM05D001098 ORTHO05D003515 9.3e-09 64.3 48 64.6
AUR62030022 Chenopodium quinoa HOM05D001098 ORTHO05D003515 9.3e-09 64.3 48 64.6
FAN02G0815 Fragaria x ananassa HOM05D001098 ORTHO05D003515 9.3e-09 64.3 46 65.2
Hund22601 Selenicereus undatus HOM05D001098 ORTHO05D003515 9.3e-09 64.3 48 62.5
BcaC07g40278 Brassica carinata HOM05D001098 ORTHO05D003515 1.2e-08 63.9 48 62.5
BcaC07g40460 Brassica carinata HOM05D001098 ORTHO05D003515 1.2e-08 63.9 48 62.5
A09p51630 Brassica napus HOM05D001098 ORTHO05D003515 1.2e-08 63.9 48 62.5
C08p34400 Brassica napus HOM05D001098 ORTHO05D003515 1.2e-08 63.9 48 62.5
BolC8t51041H Brassica oleracea HOM05D001098 ORTHO05D003515 1.2e-08 63.9 48 62.5
BraA09t40603Z Brassica rapa HOM05D001098 ORTHO05D003515 1.2e-08 63.9 48 62.5
HanXRQChr07g0186261 Helianthus annuus HOM05D001098 ORTHO05D003515 1.2e-08 63.9 48 64.6
Lsat_1_v5_gn_2_51900 Lactuca sativa HOM05D001098 ORTHO05D003515 1.2e-08 63.9 46 67.4
Phvul.007G003900 Phaseolus vulgaris HOM05D001098 ORTHO05D003515 1.2e-08 63.9 48 64.6
Carub.0004s2571 Capsella rubella HOM05D001098 ORTHO05D003515 1.6e-08 63.5 62 56.5
CARHR138320 Cardamine hirsuta HOM05D001098 ORTHO05D003515 1.6e-08 63.5 46 67.4
ClCG08G004290 Citrullus lanatus HOM05D001098 ORTHO05D003515 1.6e-08 63.5 46 69.6
Ciclev10020426m.g Citrus clementina HOM05D001098 ORTHO05D003515 1.6e-08 63.5 64 53.1
Thhalv10001470m.g Eutrema salsugineum HOM05D001098 ORTHO05D003515 1.6e-08 63.5 46 67.4
HanXRQChr05g0160081 Helianthus annuus HOM05D001098 ORTHO05D003515 1.6e-08 63.5 46 63.0
Sp4g25370 Schrenkiella parvula HOM05D001098 ORTHO05D003515 1.6e-08 63.5 46 67.4
THA.LOC104803609 Tarenaya hassleriana HOM05D001098 ORTHO05D003515 1.6e-08 63.5 62 54.8
MSTRG.21995 Avicennia marina HOM05D001098 ORTHO05D003515 2.1e-08 63.2 62 56.5
Cfa006231 Carpinus fangiana HOM05D001098 ORTHO05D003515 2.1e-08 63.2 48 62.5
Dinv21354 Davidia involucrata HOM05D001098 ORTHO05D003515 2.1e-08 63.2 62 54.8
FvH4_4g11380 Fragaria vesca HOM05D001098 ORTHO05D003515 2.1e-08 63.2 46 65.2
FAN07G1473 Fragaria x ananassa HOM05D001098 ORTHO05D003515 2.1e-08 63.2 46 65.2
FAN17G2346 Fragaria x ananassa HOM05D001098 ORTHO05D003515 2.1e-08 63.2 46 65.2
Glyma.10G296000 Glycine max HOM05D001098 ORTHO05D003515 2.1e-08 63.2 46 67.4
Glyma.20G246100 Glycine max HOM05D001098 ORTHO05D003515 2.1e-08 63.2 46 67.4
MD04G1037800 Malus domestica HOM05D001098 ORTHO05D003515 2.1e-08 63.2 48 62.5
MD13G1273000 Malus domestica HOM05D001098 ORTHO05D003515 2.1e-08 63.2 48 62.5
Prupe.1G187700 Prunus persica HOM05D001098 ORTHO05D003515 2.1e-08 63.2 48 62.5
RcHm_v2.0_Chr4g0407851 Rosa chinensis HOM05D001098 ORTHO05D003515 2.1e-08 63.2 46 65.2
Atru.chr3.1600 Acer truncatum HOM05D001098 ORTHO05D003515 2.7e-08 62.8 48 62.5
Atru.chr3.1608 Acer truncatum HOM05D001098 ORTHO05D003515 2.7e-08 62.8 48 62.5
CAN.G710.62 Capsicum annuum HOM05D001098 ORTHO05D003515 2.7e-08 62.8 46 63.0
Nitab4.5_0001049g0120 Nicotiana tabacum HOM05D001098 ORTHO05D003515 2.7e-08 62.8 46 63.0
Nitab4.5_0002908g0090 Nicotiana tabacum HOM05D001098 ORTHO05D003515 2.7e-08 62.8 46 63.0
Os02g0604300 Oryza sativa ssp. japonica HOM05D001098 ORTHO05D003515 2.7e-08 62.8 46 65.2
Peaxi162Scf00286g00116 Petunia axillaris HOM05D001098 ORTHO05D003515 2.7e-08 62.8 46 63.0
PGR142G0121 Punica granatum HOM05D001098 ORTHO05D003515 2.7e-08 62.8 62 54.8
Solyc09g098520.4 Solanum lycopersicum HOM05D001098 ORTHO05D003515 2.7e-08 62.8 46 63.0
Sopen09g036440 Solanum pennellii HOM05D001098 ORTHO05D003515 2.7e-08 62.8 46 63.0
Actinidia11309 Actinidia chinensis HOM05D001098 ORTHO05D003515 3.5e-08 62.4 62 54.8
Actinidia39858 Actinidia chinensis HOM05D001098 ORTHO05D003515 3.5e-08 62.4 62 54.8
ATR0743G220 Amborella trichopoda HOM05D001098 ORTHO05D003515 3.5e-08 62.4 62 53.2
BcaB01g03402 Brassica carinata HOM05D001098 ORTHO05D003515 3.5e-08 62.4 46 65.2
BcaB06g29292 Brassica carinata HOM05D001098 ORTHO05D003515 3.5e-08 62.4 46 65.2
BcaC01g05248 Brassica carinata HOM05D001098 ORTHO05D003515 3.5e-08 62.4 46 65.2
BcaC02g07198 Brassica carinata HOM05D001098 ORTHO05D003515 3.5e-08 62.4 46 65.2
A03p24140 Brassica napus HOM05D001098 ORTHO05D003515 3.5e-08 62.4 46 65.2
A04p32520 Brassica napus HOM05D001098 ORTHO05D003515 3.5e-08 62.4 46 65.2
C03p28730 Brassica napus HOM05D001098 ORTHO05D003515 3.5e-08 62.4 46 65.2
BolC3t15235H Brassica oleracea HOM05D001098 ORTHO05D003515 3.5e-08 62.4 46 65.2
BolC4t28525H Brassica oleracea HOM05D001098 ORTHO05D003515 3.5e-08 62.4 46 65.2
BraA03t11624Z Brassica rapa HOM05D001098 ORTHO05D003515 3.5e-08 62.4 46 65.2
BraA04t18716Z Brassica rapa HOM05D001098 ORTHO05D003515 3.5e-08 62.4 46 65.2
Ca_11404_v3 Cicer arietinum L. HOM05D001098 ORTHO05D003515 3.5e-08 62.4 48 64.6
Ca_30098_v3 Cicer arietinum L. HOM05D001098 ORTHO05D003515 3.5e-08 62.4 48 64.6
HanXRQChr02g0057871 Helianthus annuus HOM05D001098 ORTHO05D003515 3.5e-08 62.4 46 65.2
Manes.11G116200 Manihot esculenta HOM05D001098 ORTHO05D003515 3.5e-08 62.4 62 54.8
Medtr1g116565 Medicago truncatula HOM05D001098 ORTHO05D003515 3.5e-08 62.4 48 64.6
Psat6g241560 Pisum sativum HOM05D001098 ORTHO05D003515 3.5e-08 62.4 48 64.6
Rhsim02G0075800 Rhododendron simsii HOM05D001098 ORTHO05D003515 3.5e-08 62.4 62 54.8
SEGI_11600 Sequoiadendron giganteum HOM05D001098 ORTHO05D003515 3.5e-08 62.4 62 53.2
Thecc.05G185000 Theobroma cacao HOM05D001098 ORTHO05D003515 3.5e-08 62.4 62 56.5
TPR.G10392 Trifolium pratense HOM05D001098 ORTHO05D003515 3.5e-08 62.4 48 64.6
arahy.Tifrunner.gnm1.ann1.UD8U5Y Arachis hypogaea HOM05D001098 ORTHO05D003515 4.6e-08 62.0 46 65.2
Lj5g0027220 Lotus japonicus HOM05D001098 ORTHO05D003515 4.6e-08 62.0 48 64.6
PSO017G5825 Papaver somniferum HOM05D001098 ORTHO05D003515 4.6e-08 62.0 48 60.4
PSO675G1128 Papaver somniferum HOM05D001098 ORTHO05D003515 4.6e-08 62.0 48 60.4
Aa31LG1G25050 Aethionema arabicum HOM05D001098 ORTHO05D003515 6.0e-08 61.6 46 65.2
A04p02190 Brassica napus HOM05D001098 ORTHO05D003515 6.0e-08 61.6 48 62.5
MELO3C011623.2 Cucumis melo HOM05D001098 ORTHO05D003515 6.0e-08 61.6 46 67.4
CsaV3_6G003740 Cucumis sativus L. HOM05D001098 ORTHO05D003515 6.0e-08 61.6 46 67.4
Duzib106G0563 Durio zibethinus HOM05D001098 ORTHO05D003515 6.0e-08 61.6 64 56.2
Lsat_1_v5_gn_1_71640 Lactuca sativa HOM05D001098 ORTHO05D003515 6.0e-08 61.6 46 65.2
Potri.017G035800 Populus trichocarpa HOM05D001098 ORTHO05D003515 6.0e-08 61.6 46 63.0
Sabra08G0057600 Salix brachista HOM05D001098 ORTHO05D003515 6.0e-08 61.6 46 65.2
Sabra17G0022700 Salix brachista HOM05D001098 ORTHO05D003515 6.0e-08 61.6 46 63.0
vmacro15641 Vaccinium macrocarpon HOM05D001098 ORTHO05D003515 6.0e-08 61.6 62 54.8
CAN.G321.13 Capsicum annuum HOM05D001098 ORTHO05D003515 1.0e-07 60.8 46 63.0
COL.COLO4_14417 Corchorus olitorius HOM05D001098 ORTHO05D003515 1.0e-07 60.8 46 63.0
Haze_04603 Corylus avellana HOM05D001098 ORTHO05D003515 1.0e-07 60.8 48 60.4
Lalb_Chr06g0164491 Lupinus albus HOM05D001098 ORTHO05D003515 1.0e-07 60.8 46 65.2
MBI11_g35031_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D003515 1.0e-07 60.8 62 51.6
SGA_v2.0_scaffold12G06145 Striga asiatica HOM05D001098 ORTHO05D003515 1.0e-07 60.8 62 54.8
Aa31LG10G13690 Aethionema arabicum HOM05D001098 ORTHO05D003515 1.3e-07 60.5 46 65.2
Lalb_Chr21g0307611 Lupinus albus HOM05D001098 ORTHO05D003515 1.3e-07 60.5 46 65.2
Nn1g09874 Nelumbo nucifera HOM05D001098 ORTHO05D003515 1.3e-07 60.5 62 53.2
Cfa015774 Carpinus fangiana HOM05D001098 ORTHO05D003515 1.8e-07 60.1 46 63.0
Haze_00721 Corylus avellana HOM05D001098 ORTHO05D003515 1.8e-07 60.1 46 63.0
Dinv44216 Davidia involucrata HOM05D001098 ORTHO05D003515 1.8e-07 60.1 46 63.0
MBI08_g46113_MAGBIO Magnolia biondii HOM05D001098 ORTHO05D003515 1.8e-07 60.1 62 51.6
Mapoly0165s0011 Marchantia polymorpha HOM05D001098 ORTHO05D003515 1.8e-07 60.1 62 51.6
Os04g0490600 Oryza sativa ssp. japonica HOM05D001098 ORTHO05D003515 1.8e-07 60.1 46 65.2
Sed0004441 Sechium edule HOM05D001098 ORTHO05D003515 1.8e-07 60.1 46 65.2
Thecc.05G002800 Theobroma cacao HOM05D001098 ORTHO05D003515 1.8e-07 60.1 64 51.6
Cc09_g04080 Coffea canephora HOM05D001098 ORTHO05D003515 2.3e-07 59.7 62 53.2
Duzib093G0299 Durio zibethinus HOM05D001098 ORTHO05D003515 2.3e-07 59.7 46 63.0
Gohir.A11G329800 Gossypium hirsutum HOM05D001098 ORTHO05D003515 2.3e-07 59.7 46 63.0
Gohir.D08G275200 Gossypium hirsutum HOM05D001098 ORTHO05D003515 2.3e-07 59.7 46 63.0
Gohir.D11G349000 Gossypium hirsutum HOM05D001098 ORTHO05D003515 2.3e-07 59.7 46 63.0
Gorai.004G293600 Gossypium raimondii HOM05D001098 ORTHO05D003515 2.3e-07 59.7 46 63.0
Gorai.007G379300 Gossypium raimondii HOM05D001098 ORTHO05D003515 2.3e-07 59.7 46 63.0
Manes.13G001200 Manihot esculenta HOM05D001098 ORTHO05D003515 2.3e-07 59.7 46 63.0
Hma1.2p1_0597F.1_g186470 Hydrangea macrophylla HOM05D001098 ORTHO05D003515 3.0e-07 59.3 46 60.9
Nitab4.5_0001003g0120 Nicotiana tabacum HOM05D001098 ORTHO05D003515 3.0e-07 59.3 46 63.0
Nitab4.5_0012793g0010 Nicotiana tabacum HOM05D001098 ORTHO05D003515 3.0e-07 59.3 46 63.0
QL10p047425 Quercus lobata HOM05D001098 ORTHO05D003515 3.0e-07 59.3 46 63.0
Sed0001161 Sechium edule HOM05D001098 ORTHO05D003515 3.0e-07 59.3 46 65.2
Solyc11g008610.3 Solanum lycopersicum HOM05D001098 ORTHO05D003515 3.0e-07 59.3 46 63.0
Sopen11g004400 Solanum pennellii HOM05D001098 ORTHO05D003515 3.0e-07 59.3 46 63.0
TAR633G0110 Trochodendron aralioides HOM05D001098 ORTHO05D003515 3.0e-07 59.3 62 51.6
Zm00001eb184070 Zea mays HOM05D001098 ORTHO05D003515 3.0e-07 59.3 46 63.0
Zm00001eb246560 Zea mays HOM05D001098 ORTHO05D003515 3.0e-07 59.3 46 63.0
Aqoxy2G04114 Aquilegia oxysepala HOM05D001098 ORTHO05D003515 3.9e-07 58.9 62 53.2
DCAR_027528 Daucus carota HOM05D001098 ORTHO05D003515 3.9e-07 58.9 48 56.2
Lj6C60G7 Lonicera japonica HOM05D001098 ORTHO05D003515 3.9e-07 58.9 46 60.9
Lalb_Chr02g0144331 Lupinus albus HOM05D001098 ORTHO05D003515 3.9e-07 58.9 46 63.0
SalBow3G4600 Salvia bowleyana HOM05D001098 ORTHO05D003515 3.9e-07 58.9 62 53.2
Hund12228 Selenicereus undatus HOM05D001098 ORTHO05D003515 3.9e-07 58.9 46 63.0
TWI18G0847 Tripterygium wilfordii HOM05D001098 ORTHO05D003515 3.9e-07 58.9 46 60.9
TAR362G0247 Trochodendron aralioides HOM05D001098 ORTHO05D003515 3.9e-07 58.9 62 51.6
AagrBONN_evm.TU.Sc2ySwM_344.665 Anthoceros agrestis HOM05D001098 ORTHO05D003515 5.1e-07 58.5 46 58.7
CSS0017763 Camellia sinensis var. sinensis HOM05D001098 ORTHO05D003515 5.1e-07 58.5 46 60.9
CiPaw.08G112200 Carya illinoinensis HOM05D001098 ORTHO05D003515 5.1e-07 58.5 48 56.2
Duzib128G1666 Durio zibethinus HOM05D001098 ORTHO05D003515 5.1e-07 58.5 46 65.2
Lj3A231G6 Lonicera japonica HOM05D001098 ORTHO05D003515 5.1e-07 58.5 48 58.3
Nn7g37649 Nelumbo nucifera HOM05D001098 ORTHO05D003515 5.1e-07 58.5 46 60.9
Oeu053845.1 Olea europaea HOM05D001098 ORTHO05D003515 6.7e-07 58.2 46 63.0
Os01g0898900 Oryza sativa ssp. japonica HOM05D001098 ORTHO05D003515 6.7e-07 58.2 46 58.7
Actinidia34622 Actinidia chinensis HOM05D001098 ORTHO05D003515 8.7e-07 57.8 46 58.7
MSTRG.24584 Avicennia marina HOM05D001098 ORTHO05D003515 8.7e-07 57.8 46 60.9
Oeu034469.1 Olea europaea HOM05D001098 ORTHO05D003515 8.7e-07 57.8 46 60.9
Pp3c10_200 Physcomitrium patens HOM05D001098 ORTHO05D003515 8.7e-07 57.8 46 56.5
GSVIVG01013580001 Vitis vinifera HOM05D001098 ORTHO05D003515 8.7e-07 57.8 46 60.9
Zm00001eb365640 Zea mays HOM05D001098 ORTHO05D003515 8.7e-07 57.8 46 58.7
Eucgr.H00419 Eucalyptus grandis HOM05D001098 ORTHO05D003515 1.1e-06 57.4 46 63.0
Actinidia35960 Actinidia chinensis HOM05D001098 ORTHO05D003515 1.5e-06 57.0 46 58.7
Gohir.D13G099800 Gossypium hirsutum HOM05D001098 ORTHO05D003515 1.5e-06 57.0 46 63.0
Lsat_1_v5_gn_6_55000 Lactuca sativa HOM05D001098 ORTHO05D003515 1.5e-06 57.0 57 54.4
Manes.12G001900 Manihot esculenta HOM05D001098 ORTHO05D003515 1.5e-06 57.0 46 60.9
Nitab4.5_0002466g0040 Nicotiana tabacum HOM05D001098 ORTHO05D003515 1.5e-06 57.0 46 56.5
Migut.G01025 Erythranthe guttata HOM05D001098 ORTHO05D003515 1.9e-06 56.6 62 50.0
Dinv22694 Davidia involucrata HOM05D001098 ORTHO05D003515 2.5e-06 56.2 60 53.3
unitig_8.g4799 Utricularia gibba HOM05D001098 ORTHO05D003515 3.3e-06 55.8 46 58.7
GSVIVG01023429001 Vitis vinifera HOM05D001098 ORTHO05D003515 3.3e-06 55.8 46 56.5
Gohir.A08G227500 Gossypium hirsutum HOM05D001098 ORTHO05D003515 5.6e-06 55.1 46 58.7
Gohir.D08G247900 Gossypium hirsutum HOM05D001098 ORTHO05D003515 5.6e-06 55.1 46 58.7
Gorai.004G264400 Gossypium raimondii HOM05D001098 ORTHO05D003515 5.6e-06 55.1 46 58.7
Peaxi162Scf00296g01214 Petunia axillaris HOM05D001098 ORTHO05D003515 9.6e-06 54.3 42 64.3


User provided reference genes

Program Settings