Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR166110 Cardamine hirsuta HOM05D005937 ORTHO05D008151 0.0e+00 1801.2 884 100.0
AT3G56040 Arabidopsis thaliana HOM05D005937 ORTHO05D008151 0.0e+00 1641.7 884 91.6
AL5G37310 Arabidopsis lyrata HOM05D005937 ORTHO05D008151 0.0e+00 1635.9 890 90.2
Carub.0005s2277 Capsella rubella HOM05D005937 ORTHO05D008151 0.0e+00 1632.8 882 90.8
Sp5g06500 Schrenkiella parvula HOM05D005937 ORTHO05D008151 0.0e+00 1603.6 890 89.0
Thhalv10005783m.g Eutrema salsugineum HOM05D005937 ORTHO05D008151 0.0e+00 1598.6 888 89.1
C08p31350 Brassica napus HOM05D005937 ORTHO05D008151 0.0e+00 1550.8 887 87.0
A09p48990 Brassica napus HOM05D005937 ORTHO05D008151 0.0e+00 1550.0 886 86.9
BraA09t40354Z Brassica rapa HOM05D005937 ORTHO05D008151 0.0e+00 1550.0 886 86.9
Aa31LG10G10960 Aethionema arabicum HOM05D005937 ORTHO05D008151 0.0e+00 1510.0 889 84.4
THA.LOC104811372 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 0.0e+00 1360.1 891 75.0
THA.LOC104824329 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 0.0e+00 1359.0 877 75.6
Atru.chr12.85 Acer truncatum HOM05D005937 ORTHO05D008151 0.0e+00 1194.9 881 67.1
Duzib114G0783 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1176.0 886 65.8
Potri.010G185800 Populus trichocarpa HOM05D005937 ORTHO05D008151 0.0e+00 1172.5 878 65.6
FAN01G2918 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1140.6 856 64.8
FvH4_7g24830 Fragaria vesca HOM05D005937 ORTHO05D008151 0.0e+00 1137.9 858 64.5
Thecc.10G012700 Theobroma cacao HOM05D005937 ORTHO05D008151 0.0e+00 1137.5 887 64.0
RcHm_v2.0_Chr1g0370701 Rosa chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1136.7 879 64.1
FAN06G2004 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1133.6 856 64.5
Ciclev10030686m.g Citrus clementina HOM05D005937 ORTHO05D008151 0.0e+00 1127.5 878 64.9
CiPaw.02G194600 Carya illinoinensis HOM05D005937 ORTHO05D008151 0.0e+00 1124.8 878 64.2
Haze_17256 Corylus avellana HOM05D005937 ORTHO05D008151 0.0e+00 1124.8 818 67.5
GSVIVG01032777001 Vitis vinifera HOM05D005937 ORTHO05D008151 0.0e+00 1122.8 883 64.4
TWI09G1402 Tripterygium wilfordii HOM05D005937 ORTHO05D008151 0.0e+00 1122.1 880 63.8
Manes.10G010100 Manihot esculenta HOM05D005937 ORTHO05D008151 0.0e+00 1121.7 879 63.4
FAN03G2902 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1120.5 864 63.8
Cpa.g.sc19.149 Carica papaya HOM05D005937 ORTHO05D008151 0.0e+00 1118.2 913 61.9
MD07G1224900 Malus domestica HOM05D005937 ORTHO05D008151 0.0e+00 1116.3 877 63.9
Sabra10G0143100 Salix brachista HOM05D005937 ORTHO05D008151 0.0e+00 1114.4 941 59.5
Actinidia00667 Actinidia chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1102.4 878 64.0
Gohir.A10G239000 Gossypium hirsutum HOM05D005937 ORTHO05D008151 0.0e+00 1098.6 860 64.4
Gorai.011G291300 Gossypium raimondii HOM05D005937 ORTHO05D008151 0.0e+00 1098.2 887 63.8
Prupe.2G253500 Prunus persica HOM05D005937 ORTHO05D008151 0.0e+00 1094.7 876 62.8
Eucgr.J00183 Eucalyptus grandis HOM05D005937 ORTHO05D008151 0.0e+00 1093.2 816 65.7
QL08p063536 Quercus lobata HOM05D005937 ORTHO05D008151 0.0e+00 1093.2 876 63.0
TAR633G1521 Trochodendron aralioides HOM05D005937 ORTHO05D008151 0.0e+00 1091.6 884 62.6
Phvul.001G244900 Phaseolus vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1090.5 812 65.6
CANSAT56G2579 Cannabis sativa HOM05D005937 ORTHO05D008151 0.0e+00 1089.3 873 62.4
CSS0046957 Camellia sinensis var. sinensis HOM05D005937 ORTHO05D008151 0.0e+00 1087.4 902 62.3
Migut.F01477 Erythranthe guttata HOM05D005937 ORTHO05D008151 0.0e+00 1087.4 877 62.7
Hund15900 Selenicereus undatus HOM05D005937 ORTHO05D008151 0.0e+00 1083.9 885 61.2
Duzib106G1087 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1082.8 890 61.6
Nitab4.5_0000058g0250 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1081.2 879 61.8
CsaV3_6G001960 Cucumis sativus L. HOM05D005937 ORTHO05D008151 0.0e+00 1080.9 888 60.9
ClCG11G006010 Citrullus lanatus HOM05D005937 ORTHO05D008151 0.0e+00 1079.7 816 63.6
Hma1.2p1_0523F.1_g172080 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 0.0e+00 1076.6 812 64.4
Rhsim09G0179300 Rhododendron simsii HOM05D005937 ORTHO05D008151 0.0e+00 1075.5 878 63.2
Ah.16g103770 Amaranthus hybridus HOM05D005937 ORTHO05D008151 4.2e-311 1071.2 865 61.8
Glyma.11G231700 Glycine max HOM05D005937 ORTHO05D008151 4.2e-311 1071.2 821 64.7
Nitab4.5_0000969g0030 Nicotiana tabacum HOM05D005937 ORTHO05D008151 7.3e-311 1070.5 880 60.9
Nn2g10945 Nelumbo nucifera HOM05D005937 ORTHO05D008151 3.5e-310 1068.1 879 61.3
Sed0020446 Sechium edule HOM05D005937 ORTHO05D008151 1.7e-309 1065.8 882 60.9
Medtr3g071440 Medicago truncatula HOM05D005937 ORTHO05D008151 6.6e-309 1063.9 877 62.5
EL10Ac2g04871 Beta vulgaris HOM05D005937 ORTHO05D008151 1.1e-308 1063.1 924 59.2
Lalb_Chr23g0277021 Lupinus albus HOM05D005937 ORTHO05D008151 4.3e-308 1061.2 891 60.5
VMungo1383G1379 Vigna mungo HOM05D005937 ORTHO05D008151 4.3e-308 1061.2 868 62.4
arahy.Tifrunner.gnm1.ann1.0WF02T Arachis hypogaea HOM05D005937 ORTHO05D008151 3.6e-307 1058.1 816 64.0
arahy.Tifrunner.gnm1.ann1.6RBS9T Arachis hypogaea HOM05D005937 ORTHO05D008151 2.3e-306 1055.4 816 63.8
Glyma.18G025500 Glycine max HOM05D005937 ORTHO05D008151 4.0e-306 1054.7 873 61.9
CAN.G19.18 Capsicum annuum HOM05D005937 ORTHO05D008151 5.2e-306 1054.3 879 61.0
Ca_15144_v3 Cicer arietinum L. HOM05D005937 ORTHO05D008151 1.2e-305 1053.1 840 63.1
Lj6g0019628 Lotus japonicus HOM05D005937 ORTHO05D008151 1.2e-305 1053.1 843 63.3
Sopen06g016900 Solanum pennellii HOM05D005937 ORTHO05D008151 2.0e-305 1052.4 882 60.5
Solyc06g051080.4 Solanum lycopersicum HOM05D005937 ORTHO05D008151 3.4e-305 1051.6 882 60.5
Psat5g130440 Pisum sativum HOM05D005937 ORTHO05D008151 9.2e-303 1043.5 815 63.3
TPR.G10616 Trifolium pratense HOM05D005937 ORTHO05D008151 6.2e-299 1030.8 877 60.5
Lj1C959G18 Lonicera japonica HOM05D005937 ORTHO05D008151 4.0e-298 1028.1 759 65.0
Lsat_1_v5_gn_2_123720 Lactuca sativa HOM05D005937 ORTHO05D008151 1.5e-297 1026.2 838 62.2
HanXRQChr07g0203141 Helianthus annuus HOM05D005937 ORTHO05D008151 2.6e-297 1025.4 876 60.2
vmacro10023 Vaccinium macrocarpon HOM05D005937 ORTHO05D008151 3.8e-296 1021.5 911 58.9
AUR62012278 Chenopodium quinoa HOM05D005937 ORTHO05D008151 1.1e-295 1020.0 813 61.5
Oeu011112.1 Olea europaea HOM05D005937 ORTHO05D008151 3.2e-295 1018.5 944 56.0
PSO017G4998 Papaver somniferum HOM05D005937 ORTHO05D008151 3.2e-295 1018.5 849 59.5
ECA238G3710 Erigeron canadensis HOM05D005937 ORTHO05D008151 5.4e-295 1017.7 887 59.4
PSO170G3027 Papaver somniferum HOM05D005937 ORTHO05D008151 1.6e-294 1016.1 848 60.0
Aqoxy4G02431 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.3e-291 1006.5 877 58.2
DCAR_024814 Daucus carota HOM05D005937 ORTHO05D008151 3.6e-291 1005.0 826 62.3
Cfa001293 Carpinus fangiana HOM05D005937 ORTHO05D008151 4.0e-290 1001.5 694 68.7
FAN10G1632 Fragaria x ananassa HOM05D005937 ORTHO05D008151 3.4e-289 998.4 889 57.7
unitig_60.g25670 Utricularia gibba HOM05D005937 ORTHO05D008151 4.5e-289 998.0 831 60.4
PGR044G1548 Punica granatum HOM05D005937 ORTHO05D008151 1.6e-286 989.6 862 59.3
Dinv21757 Davidia involucrata HOM05D005937 ORTHO05D008151 2.4e-282 975.7 881 58.2
AUR62022920 Chenopodium quinoa HOM05D005937 ORTHO05D008151 3.2e-279 965.3 737 62.7
ATR0174G021 Amborella trichopoda HOM05D005937 ORTHO05D008151 7.9e-278 960.7 861 56.8
Os05g0468600 Oryza sativa ssp. japonica HOM05D005937 ORTHO05D008151 3.4e-273 945.3 794 56.7
Gohir.D10G250900 Gossypium hirsutum HOM05D005937 ORTHO05D008151 2.9e-272 942.2 767 63.9
Cc02_g06180 Coffea canephora HOM05D005937 ORTHO05D008151 4.2e-271 938.3 640 69.4
Peaxi162Scf00284g00620 Petunia axillaris HOM05D005937 ORTHO05D008151 3.5e-270 935.3 867 56.7
Zm00001eb351780 Zea mays HOM05D005937 ORTHO05D008151 2.4e-266 922.5 856 53.9
MELO3C008313.2 Cucumis melo HOM05D005937 ORTHO05D008151 1.8e-261 906.4 695 64.9
COL.COLO4_25772 Corchorus olitorius HOM05D005937 ORTHO05D008151 2.2e-259 899.4 783 58.7
MD01G1156200 Malus domestica HOM05D005937 ORTHO05D008151 4.8e-259 898.3 696 63.6
MBI15_g40751_MAGBIO Magnolia biondii HOM05D005937 ORTHO05D008151 1.4e-255 886.7 903 52.7
Sc10g0002520 Simmondsia chinensis HOM05D005937 ORTHO05D008151 4.7e-246 855.1 688 63.4
Mapoly0007s0127 Marchantia polymorpha HOM05D005937 ORTHO05D008151 3.8e-240 835.5 864 49.3
AagrBONN_evm.TU.Sc2ySwM_368.2798 Anthoceros agrestis HOM05D005937 ORTHO05D008151 6.1e-238 828.2 829 50.7
Pp3c22_15610 Physcomitrium patens HOM05D005937 ORTHO05D008151 9.1e-234 814.3 864 49.0
SGA_v2.0_scaffold395G50730 Striga asiatica HOM05D005937 ORTHO05D008151 1.0e-224 784.3 744 57.8
SMO141G0067 Selaginella moellendorffii HOM05D005937 ORTHO05D008151 7.3e-215 751.5 747 50.6
HPP92_007567 Vanilla planifolia HOM05D005937 ORTHO05D008151 1.7e-192 677.2 817 47.7
CBR_g61489 Chara braunii HOM05D005937 ORTHO05D008151 1.2e-190 671.0 589 53.3
BcaB01g00040 Brassica carinata HOM05D005937 ORTHO05D008151 1.7e-184 650.6 404 83.4
Actinidia00964 Actinidia chinensis HOM05D005937 ORTHO05D008151 5.6e-175 619.0 480 63.1
Hma1.2p1_0523F.1_g172070 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 4.8e-174 615.9 503 62.0
PRCOL_00004696 Prasinoderma coloniale HOM05D005937 ORTHO05D008151 1.4e-154 551.2 669 43.5
Cre12.g554250 Chlamydomonas reinhardtii HOM05D005937 ORTHO05D008151 9.3e-154 548.5 794 40.4
CDE04G2743 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 2.4e-141 507.3 549 51.4
HPP92_007578 Vanilla planifolia HOM05D005937 ORTHO05D008151 9.1e-117 425.6 415 53.5
RhsimUnG0153700 Rhododendron simsii HOM05D005937 ORTHO05D008151 3.0e-112 410.6 300 68.0
Rhsim12G0073000 Rhododendron simsii HOM05D005937 ORTHO05D008151 2.8e-105 387.5 299 65.6
BolC8t50756H Brassica oleracea HOM05D005937 ORTHO05D008151 9.8e-103 379.0 206 86.9
SEGI_34891 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 1.1e-90 339.0 248 66.5
Aqoxy1G01260 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 2.3e-88 331.3 197 76.6
Aqoxy2G01148 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 5.2e-88 330.1 188 79.8
CDE04G2646 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 2.0e-87 328.2 246 61.8
Aqoxy4G01451 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 2.6e-87 327.8 186 80.1
HPP92_007579 Vanilla planifolia HOM05D005937 ORTHO05D008151 1.0e-75 289.3 219 59.4
MCO05G015 Micromonas commoda HOM05D005937 ORTHO05D008151 5.1e-75 287.0 422 37.9
SEGI_09306 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 3.8e-46 191.0 144 60.4
Ah.00g001390 Amaranthus hybridus HOM05D005937 ORTHO05D008151 4.2e-45 187.6 147 55.8
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 7.7e-23 113.6 165 36.4
Aqoxy4G01461 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 6.1e-20 104.0 234 33.8
Hund15853 Selenicereus undatus HOM05D005937 ORTHO05D026713 1.0e-11 76.6 111 41.4
Rhsim12G0072900 Rhododendron simsii HOM05D005937 ORTHO05D008151 3.7e-09 68.2 66 53.0
Aqoxy4G00767 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 5.3e-08 64.3 92 42.4
SEGI_37602 Sequoiadendron giganteum HOM05D005937 ORTHO05D026713 1.6e-07 62.8 174 28.7


User provided reference genes

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