Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR147940 Cardamine hirsuta HOM05D008305 ORTHO05D010625 2.8e-75 285.0 130 100.0
AL5G15840 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 6.6e-40 167.5 130 60.8
CARHR147950 Cardamine hirsuta HOM05D008305 ORTHO05D010625 1.5e-39 166.4 115 65.2
Carub.0008s0200 Capsella rubella HOM05D008305 ORTHO05D010625 6.2e-38 161.0 130 56.9
Thhalv10005109m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 2.6e-36 155.6 138 53.6
AT3G27680 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 5.8e-36 154.5 136 54.4
AT3G26870 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 9.8e-36 153.7 130 55.4
Carub.0007s3550 Capsella rubella HOM05D008305 ORTHO05D010625 1.3e-35 153.3 135 56.3
AL5G17120 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 2.9e-35 152.1 136 52.9
AL4G15990 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 9.2e-34 147.1 137 51.8
Carub.0007s3551 Capsella rubella HOM05D008305 ORTHO05D010625 9.2e-34 147.1 138 53.6
Carub.0005s0612 Capsella rubella HOM05D008305 ORTHO05D010625 1.0e-32 143.7 134 52.2
AT3G27331 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 1.6e-30 136.3 128 51.6
AT3G27329 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 6.2e-30 134.4 123 52.8
AL5G16640 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 3.1e-29 132.1 123 52.0
A06p41710 Brassica napus HOM05D008305 ORTHO05D010625 8.9e-29 130.6 135 49.6
Carub.0005s0497 Capsella rubella HOM05D008305 ORTHO05D010625 1.5e-28 129.8 121 51.2
AT3G26860 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 2.0e-28 129.4 115 53.9
BcaC06g33884 Brassica carinata HOM05D008305 ORTHO05D010625 2.0e-28 129.4 135 49.6
C07p35910 Brassica napus HOM05D008305 ORTHO05D010625 2.0e-28 129.4 135 49.6
BolC7t44108H Brassica oleracea HOM05D008305 ORTHO05D010625 2.0e-28 129.4 135 49.6
CARHR147930 Cardamine hirsuta HOM05D008305 ORTHO05D010625 2.0e-28 129.4 135 48.1
C07p35950 Brassica napus HOM05D008305 ORTHO05D010625 3.4e-28 128.6 135 50.4
BolC7t44112H Brassica oleracea HOM05D008305 ORTHO05D010625 3.4e-28 128.6 135 50.4
Sp2g16000 Schrenkiella parvula HOM05D008305 ORTHO05D010625 7.5e-28 127.5 137 47.4
BcaC06g33883 Brassica carinata HOM05D008305 ORTHO05D010625 2.9e-27 125.6 135 49.6
Carub.0007s3549 Capsella rubella HOM05D008305 ORTHO05D010625 2.9e-27 125.6 130 50.0
BcaC06g31040 Brassica carinata HOM05D008305 ORTHO05D010625 4.9e-27 124.8 135 49.6
C07p35920 Brassica napus HOM05D008305 ORTHO05D010625 4.9e-27 124.8 135 49.6
BolC7t44109H Brassica oleracea HOM05D008305 ORTHO05D010625 4.9e-27 124.8 135 49.6
AT4G08560 Arabidopsis thaliana HOM05D000867 ORTHO05D012315 1.1e-26 123.6 93 60.2
BolC3t14126H Brassica oleracea HOM05D008305 ORTHO05D010625 7.1e-26 120.9 105 52.4
Thhalv10005287m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 6.6e-24 114.4 137 45.3
AT2G24880 Arabidopsis thaliana HOM05D008305 ORTHO05D010625 2.5e-23 112.5 95 54.7
C03p17120 Brassica napus HOM05D008305 ORTHO05D010625 4.3e-23 111.7 123 45.5
Thhalv10026776m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 2.1e-22 109.4 133 42.9
Carub.0005s0622 Capsella rubella HOM05D008305 ORTHO05D010625 2.4e-21 105.9 106 45.3
Thhalv10005543m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 5.8e-20 101.3 135 40.7
Thhalv10026775m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 1.1e-18 97.1 133 39.1
CARHR147970 Cardamine hirsuta HOM05D008305 ORTHO05D002833 1.4e-18 96.7 139 37.4
C07p35940 Brassica napus HOM05D008305 ORTHO05D010625 2.4e-18 95.9 104 46.2
BolC7t44111H Brassica oleracea HOM05D008305 ORTHO05D010625 7.1e-18 94.4 135 43.0
Carub.0093s0003 Capsella rubella HOM05D008305 ORTHO05D010625 1.2e-17 93.6 99 45.5
Carub.0005s0618 Capsella rubella HOM05D008305 ORTHO05D010625 1.6e-17 93.2 99 45.5
AT5G04347 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 2.1e-17 92.8 133 39.1
BcaNung05795 Brassica carinata HOM05D003012 ORTHO05D002833 2.1e-17 92.8 134 41.0
CARHR208940 Cardamine hirsuta HOM05D003012 ORTHO05D002833 2.1e-17 92.8 118 40.7
AL1G66430 Arabidopsis lyrata HOM05D008305 ORTHO05D010625 2.7e-17 92.4 98 46.9
Thhalv10026927m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 2.7e-17 92.4 129 40.3
AL6G13980 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 3.5e-17 92.0 133 38.3
AT3G26880 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 1.5e-15 86.7 132 36.4
BcaB01g05892 Brassica carinata HOM05D003012 ORTHO05D002833 1.9e-15 86.3 135 38.5
A06p41680 Brassica napus HOM05D008305 ORTHO05D010625 1.9e-15 86.3 80 51.2
C03p01980 Brassica napus HOM05D003012 ORTHO05D002833 1.9e-15 86.3 135 38.5
BolC3t12752H Brassica oleracea HOM05D003012 ORTHO05D002833 1.9e-15 86.3 135 38.5
A03p01630 Brassica napus HOM05D003012 ORTHO05D002833 7.3e-15 84.3 134 35.8
BraA03t09538Z Brassica rapa HOM05D003012 ORTHO05D002833 7.3e-15 84.3 134 35.8
AT5G04350 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 6.2e-14 81.3 121 32.2
Aa31LG2G5710 Aethionema arabicum HOM05D008305 ORTHO05D010625 8.1e-14 80.9 105 38.1
AL5G15850 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 1.1e-13 80.5 121 35.5
Thhalv10015919m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 1.4e-13 80.1 116 38.8
THA.LOC104816675 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 4.0e-13 78.6 116 35.3
Thhalv10005094m.g Eutrema salsugineum HOM05D008305 ORTHO05D010625 4.4e-12 75.1 128 35.2
Carub.0006s0330 Capsella rubella HOM05D003012 ORTHO05D002833 5.8e-12 74.7 121 31.4
THA.LOC104816680 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 5.8e-12 74.7 123 39.0
C03p02010 Brassica napus HOM05D003012 ORTHO05D002833 7.6e-12 74.3 134 33.6
Aa31LG11G5250 Aethionema arabicum HOM05D013273 ORTHO05D002833 1.3e-11 73.6 133 33.1
CARHR145180 Cardamine hirsuta HOM05D008305 ORTHO05D010625 6.4e-11 71.2 47 63.8
BcaC07g41761 Brassica carinata HOM05D003012 ORTHO05D002833 8.4e-11 70.9 140 31.4
C08p47990 Brassica napus HOM05D003012 ORTHO05D002833 8.4e-11 70.9 140 31.4
Thhalv10002162m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 8.4e-11 70.9 123 35.8
A07p19700 Brassica napus HOM05D003012 ORTHO05D002833 1.1e-10 70.5 134 31.3
BolC8t52337H Brassica oleracea HOM05D003012 ORTHO05D002833 1.1e-10 70.5 140 31.4
A04p29720 Brassica napus HOM05D003012 ORTHO05D002833 1.4e-10 70.1 138 35.5
Sp6g38380 Schrenkiella parvula HOM05D003012 ORTHO05D002833 1.4e-10 70.1 96 35.4
BraA04t18436Z Brassica rapa HOM05D003012 ORTHO05D002833 1.9e-10 69.7 138 35.5
THA.LOC104806861 Tarenaya hassleriana HOM05D008305 ORTHO05D002833 1.9e-10 69.7 101 36.6
BcaC08g44379 Brassica carinata HOM05D003012 ORTHO05D002833 2.4e-10 69.3 136 30.9
C06p18130 Brassica napus HOM05D003012 ORTHO05D002833 2.4e-10 69.3 136 30.9
BolC6t37021H Brassica oleracea HOM05D003012 ORTHO05D002833 2.4e-10 69.3 136 30.9
BraA07t29670Z Brassica rapa HOM05D003012 ORTHO05D002833 2.4e-10 69.3 136 30.9
BcaC06g32139 Brassica carinata HOM05D003012 ORTHO05D002833 4.2e-10 68.6 121 33.1
Aa31LG11G5230 Aethionema arabicum HOM05D013273 ORTHO05D015812 7.1e-10 67.8 119 31.1
BcaB06g27716 Brassica carinata HOM05D003012 ORTHO05D002833 7.1e-10 67.8 118 33.9
BcaC06g32140 Brassica carinata HOM05D003012 ORTHO05D002833 7.1e-10 67.8 121 33.1
BcaB02g08008 Brassica carinata HOM05D003012 ORTHO05D002833 9.3e-10 67.4 138 31.2
C09p72460 Brassica napus HOM05D003012 ORTHO05D002833 1.2e-09 67.0 121 30.6
A10p31770 Brassica napus HOM05D003012 ORTHO05D002833 2.1e-09 66.2 121 30.6
BraA10t45222Z Brassica rapa HOM05D003012 ORTHO05D002833 2.1e-09 66.2 121 30.6
Thhalv10015869m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 2.7e-09 65.9 123 30.9
THA.LOC104816439 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 2.7e-09 65.9 103 36.9
BolC7t46036H Brassica oleracea HOM05D003012 ORTHO05D002833 4.6e-09 65.1 108 35.2
Manes.09G050200 Manihot esculenta HOM05D000256 ORTHO05D000119 4.6e-09 65.1 100 37.0
Carub.0007s3746 Capsella rubella HOM05D003012 ORTHO05D002833 6.0e-09 64.7 136 33.1
Thhalv10028054m.g Eutrema salsugineum HOM05D003012 ORTHO05D002833 7.8e-09 64.3 138 31.9
THA.LOC104816681 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 1.0e-08 63.9 112 33.9
BcaC02g08873 Brassica carinata HOM05D003012 ORTHO05D002833 1.3e-08 63.5 133 31.6
A04p15380 Brassica napus HOM05D003012 ORTHO05D002833 1.3e-08 63.5 133 31.6
C04p49610 Brassica napus HOM05D003012 ORTHO05D002833 1.3e-08 63.5 133 31.6
BolC3t12716H Brassica oleracea HOM05D003012 ORTHO05D002833 1.3e-08 63.5 139 31.7
BolC4t26548H Brassica oleracea HOM05D003012 ORTHO05D002833 1.3e-08 63.5 133 31.6
BraA04t17178Z Brassica rapa HOM05D003012 ORTHO05D002833 1.3e-08 63.5 133 31.6
A03p01280 Brassica napus HOM05D003012 ORTHO05D002833 1.7e-08 63.2 139 31.7
A09p64370 Brassica napus HOM05D003012 ORTHO05D002833 1.7e-08 63.2 142 30.3
BraA03t09509Z Brassica rapa HOM05D003012 ORTHO05D002833 1.7e-08 63.2 139 31.7
BraA09t41781Z Brassica rapa HOM05D003012 ORTHO05D002833 1.7e-08 63.2 142 30.3
THA.LOC104816435 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 1.7e-08 63.2 106 32.1
A03p01640 Brassica napus HOM05D000149 ORTHO05D000076 2.3e-08 62.8 113 32.7
BolC9t59989H Brassica oleracea HOM05D003012 ORTHO05D002833 2.3e-08 62.8 98 31.6
BraA03t09539Z Brassica rapa HOM05D000149 ORTHO05D000076 2.3e-08 62.8 113 32.7
BcaB01g05894 Brassica carinata HOM05D000149 ORTHO05D000076 3.0e-08 62.4 113 32.7
BolC3t12754H Brassica oleracea HOM05D000149 ORTHO05D000076 3.0e-08 62.4 113 32.7
Aa31LG11G5110 Aethionema arabicum HOM05D000220 ORTHO05D000141 3.9e-08 62.0 96 32.3
C07p26380 Brassica napus HOM05D004904 ORTHO05D002833 3.9e-08 62.0 104 34.6
BolC7t43165H Brassica oleracea HOM05D004904 ORTHO05D002833 3.9e-08 62.0 104 34.6
Nn1g08794 Nelumbo nucifera HOM05D000256 ORTHO05D000119 3.9e-08 62.0 111 31.5
AL4G12990 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 5.1e-08 61.6 140 33.6
AL7G52140 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 5.1e-08 61.6 133 32.3
AT4G29037 Arabidopsis thaliana HOM05D008344 ORTHO05D011034 5.1e-08 61.6 143 28.7
BcaB01g05799 Brassica carinata HOM05D003012 ORTHO05D002833 5.1e-08 61.6 139 30.9
A03p01270 Brassica napus HOM05D003012 ORTHO05D002833 5.1e-08 61.6 140 30.7
BolC3t12715H Brassica oleracea HOM05D003012 ORTHO05D002833 5.1e-08 61.6 139 30.9
C03p01630 Brassica napus HOM05D003012 ORTHO05D002833 6.6e-08 61.2 139 30.9
Sp2g03330 Schrenkiella parvula HOM05D003012 ORTHO05D002833 6.6e-08 61.2 112 32.1
SpUn0101_0030 Schrenkiella parvula HOM05D003012 ORTHO05D002833 6.6e-08 61.2 112 32.1
ATR0693G139 Amborella trichopoda HOM05D000256 ORTHO05D000119 8.7e-08 60.8 106 35.8
A03p57360 Brassica napus HOM05D003012 ORTHO05D002833 8.7e-08 60.8 137 30.7
A06p47670 Brassica napus HOM05D004904 ORTHO05D002833 8.7e-08 60.8 101 35.6
C04p67000 Brassica napus HOM05D003012 ORTHO05D002833 8.7e-08 60.8 95 37.9
BraA03t14802Z Brassica rapa HOM05D003012 ORTHO05D002833 8.7e-08 60.8 137 30.7
BraA06t27634Z Brassica rapa HOM05D004904 ORTHO05D002833 8.7e-08 60.8 101 35.6
C08p48000 Brassica napus HOM05D003012 ORTHO05D002833 1.1e-07 60.5 142 29.6
BolC8t52338H Brassica oleracea HOM05D003012 ORTHO05D002833 1.1e-07 60.5 142 29.6
THA.LOC104816440 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 1.1e-07 60.5 64 42.2
BcaB08g37418 Brassica carinata HOM05D003012 ORTHO05D002833 1.5e-07 60.1 147 29.3
BcaB01g05811 Brassica carinata HOM05D003012 ORTHO05D002833 1.9e-07 59.7 112 31.2
BcaB08g37419 Brassica carinata HOM05D003012 ORTHO05D002833 1.9e-07 59.7 147 29.3
CsaV3_3G049910 Cucumis sativus L. HOM05D000256 ORTHO05D000119 1.9e-07 59.7 121 32.2
Nn6g33519 Nelumbo nucifera HOM05D000256 ORTHO05D000119 1.9e-07 59.7 116 33.6
BcaB08g37417 Brassica carinata HOM05D003012 ORTHO05D002833 2.5e-07 59.3 147 29.3
BcaNung05794 Brassica carinata HOM05D000149 ORTHO05D000076 2.5e-07 59.3 89 38.2
COL.COLO4_17920 Corchorus olitorius HOM05D000256 ORTHO05D000119 2.5e-07 59.3 77 40.3
Sed0022747 Sechium edule HOM05D000256 ORTHO05D000119 3.3e-07 58.9 117 29.1
Aa31LG2G5700 Aethionema arabicum HOM05D008305 ORTHO05D002833 4.3e-07 58.5 101 32.7
AL7G23410 Arabidopsis lyrata HOM05D008344 ORTHO05D011034 4.3e-07 58.5 143 28.0
FvH4_2g30460 Fragaria vesca HOM05D000256 ORTHO05D000119 4.3e-07 58.5 125 28.0
Sp7g03610 Schrenkiella parvula HOM05D003012 ORTHO05D002833 4.3e-07 58.5 130 29.2
Thecc.01G232000 Theobroma cacao HOM05D000256 ORTHO05D000119 7.3e-07 57.8 95 32.6
Phvul.011G123100 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 9.6e-07 57.4 127 30.7
Carub.0007s3750 Capsella rubella HOM05D003012 ORTHO05D002833 1.3e-06 57.0 107 33.6
THA.LOC104816438 Tarenaya hassleriana HOM05D003012 ORTHO05D002833 1.3e-06 57.0 106 29.2
BcaC02g12915 Brassica carinata HOM05D003012 ORTHO05D002833 1.6e-06 56.6 134 32.1
Thecc.02G043800 Theobroma cacao HOM05D000256 ORTHO05D000119 1.6e-06 56.6 110 29.1
TAR465G0001 Trochodendron aralioides HOM05D013890 ORTHO05D016266 1.6e-06 56.6 114 28.1
AT5G38435 Arabidopsis thaliana HOM05D003012 ORTHO05D002833 2.1e-06 56.2 134 29.9
BcaC06g33880 Brassica carinata HOM05D001308 ORTHO05D001170 2.1e-06 56.2 44 52.3
Cpa.g.sc59.81 Carica papaya HOM05D005430 ORTHO05D000119 2.1e-06 56.2 92 33.7
MELO3C033636.2 Cucumis melo HOM05D000256 ORTHO05D000119 2.1e-06 56.2 102 34.3
Potri.016G066900 Populus trichocarpa HOM05D000256 ORTHO05D000119 2.1e-06 56.2 109 32.1
ClCG07G001680 Citrullus lanatus HOM05D000256 ORTHO05D000119 2.8e-06 55.8 105 27.6
Potri.006G170200 Populus trichocarpa HOM05D013890 ORTHO05D016266 2.8e-06 55.8 55 43.6
Cpa.g.sc8.195 Carica papaya HOM05D000256 ORTHO05D000119 3.6e-06 55.5 95 32.6
Duzib052G0546 Durio zibethinus HOM05D000256 ORTHO05D000119 3.6e-06 55.5 110 30.0
Phvul.003G125200 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 3.6e-06 55.5 103 33.0
TWI14G1030 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 3.6e-06 55.5 94 36.2
CARHR236770 Cardamine hirsuta HOM05D008344 ORTHO05D011034 4.8e-06 55.1 99 32.3
Cpa.g.sc104.9 Carica papaya HOM05D000545 ORTHO05D004272 4.8e-06 55.1 114 28.9
Hma1.2p1_0170F.1_g075380 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 4.8e-06 55.1 116 31.0
MD13G1228100 Malus domestica HOM05D000256 ORTHO05D000119 4.8e-06 55.1 67 40.3
Nn1g03100 Nelumbo nucifera HOM05D000256 ORTHO05D000119 4.8e-06 55.1 88 30.7
Nn1g03103 Nelumbo nucifera HOM05D000256 ORTHO05D000119 4.8e-06 55.1 90 35.6
Lj2g0009295 Lotus japonicus HOM05D000256 ORTHO05D000119 6.2e-06 54.7 103 31.1
Sed0001966 Sechium edule HOM05D000256 ORTHO05D000119 6.2e-06 54.7 95 31.6
Sed0006094 Sechium edule HOM05D000256 ORTHO05D000119 6.2e-06 54.7 109 32.1
AL5G15860 Arabidopsis lyrata HOM05D003012 ORTHO05D002833 8.1e-06 54.3 76 32.9
MELO3C032449.2 Cucumis melo HOM05D012637 ORTHO05D000119 8.1e-06 54.3 109 32.1
Hma1.2p1_0903F.1_g234940 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 8.1e-06 54.3 107 32.7
Hma1.2p1_1359F.1_g278080 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 8.1e-06 54.3 107 32.7


User provided reference genes

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