Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 8.9e-31 136.3 71 100.0
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 6.4e-29 130.2 70 97.1
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 1.9e-28 128.6 70 95.7
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 3.2e-28 127.9 70 95.7
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 9.2e-28 126.3 71 90.1
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 1.2e-27 125.9 71 91.5
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 1.6e-27 125.6 71 90.1
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 2.0e-27 125.2 71 90.1
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 6.0e-27 123.6 71 88.7
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 6.0e-27 123.6 71 88.7
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 6.0e-27 123.6 71 88.7
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 1.0e-26 122.9 71 85.9
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 6.6e-26 120.2 71 85.9
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 1.1e-25 119.4 71 87.3
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 3.3e-25 117.9 71 84.5
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 2.1e-24 115.2 71 83.1
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 3.6e-24 114.4 70 90.0
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 1.7e-21 105.5 69 78.3
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 1.3e-18 95.9 65 75.4
BcaC02g07465 Brassica carinata HOM05D007802 ORTHO05D009879 3.3e-17 91.3 67 74.6
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 2.8e-16 88.2 69 63.8
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 8.1e-16 86.7 70 62.9
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 2.3e-15 85.1 69 63.8
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 4.0e-15 84.3 71 60.6
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 6.8e-15 83.6 70 61.4
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 8.9e-15 83.2 69 60.9
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 1.2e-14 82.8 69 63.8
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 2.0e-14 82.0 68 63.2
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 3.4e-14 81.3 69 62.3
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.4e-14 81.3 69 62.3
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 4.4e-14 80.9 69 62.3
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 7.5e-14 80.1 69 60.9
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 7.5e-14 80.1 67 64.2
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 9.9e-14 79.7 70 58.6
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 9.9e-14 79.7 67 61.2
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 1.3e-13 79.3 69 59.4
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 1.3e-13 79.3 71 59.2
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 2.2e-13 78.6 69 60.9
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 2.2e-13 78.6 66 60.6
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 2.2e-13 78.6 65 63.1
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 3.7e-13 77.8 66 65.2
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 6.4e-13 77.0 66 57.6
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 6.4e-13 77.0 66 60.6
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 8.3e-13 76.6 69 55.1
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 8.3e-13 76.6 64 62.5
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 1.1e-12 76.3 66 57.6
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 1.4e-12 75.9 65 63.1
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 1.4e-12 75.9 67 61.2
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 1.4e-12 75.9 66 57.6
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 1.9e-12 75.5 69 58.0
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 1.9e-12 75.5 64 64.1
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 2.4e-12 75.1 69 56.5
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 5.4e-12 73.9 69 56.5
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 5.4e-12 73.9 65 58.5
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 9.2e-12 73.2 69 56.5
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.2e-11 72.8 57 63.2
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 1.6e-11 72.4 67 59.7
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 3.5e-11 71.2 63 61.9
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 3.5e-11 71.2 64 57.8
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 1.0e-10 69.7 69 50.7
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.0e-10 69.7 98 43.9
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.0e-10 69.7 98 43.9
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 1.3e-10 69.3 64 54.7
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 3.9e-10 67.8 71 52.1
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 5.1e-10 67.4 68 54.4
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 5.1e-10 67.4 71 50.7
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 6.6e-10 67.0 66 53.0
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 8.6e-10 66.6 68 54.4
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 8.6e-10 66.6 71 50.7
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 3.3e-09 64.7 67 50.7
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 3.3e-09 64.7 67 50.7
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 4.3e-09 64.3 65 49.2
SalBow7G0598 Salvia bowleyana HOM05D007802 ORTHO05D009879 4.3e-09 64.3 67 49.3
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 5.6e-09 63.9 45 68.9
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 7.3e-09 63.5 63 54.0
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 7.3e-09 63.5 63 54.0
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 7.3e-09 63.5 68 50.0
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 9.5e-09 63.2 64 51.6
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 1.6e-08 62.4 55 58.2
BraA04t18408Z Brassica rapa HOM05D002861 ORTHO05D003104 1.2e-06 56.2 29 89.7
DCAR_019323 Daucus carota HOM05D007802 ORTHO05D009879 1.2e-06 56.2 65 47.7
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 1.2e-06 56.2 62 48.4
SEGI_40405 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 2.6e-06 55.1 62 48.4
Aqoxy6G00664 Aquilegia oxysepala HOM05D007802 ORTHO05D009879 4.4e-06 54.3 101 35.6
SEGI_16653 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 4.4e-06 54.3 66 45.5


User provided reference genes

Program Settings