Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 3.4e-60 235.0 131 100.0
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 4.1e-50 201.4 136 84.6
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 6.0e-49 197.6 140 81.4
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 4.3e-39 164.9 146 67.8
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 2.2e-35 152.5 145 65.5
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 7.1e-34 147.5 141 66.0
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 1.6e-33 146.4 141 65.2
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 1.6e-33 146.4 141 65.2
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 1.6e-33 146.4 141 65.2
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 1.6e-33 146.4 141 66.0
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 2.1e-33 146.0 139 66.2
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 2.5e-31 139.0 143 61.5
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 3.3e-31 138.7 138 63.8
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 4.3e-31 138.3 143 61.5
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 1.6e-30 136.3 142 61.3
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 6.2e-30 134.4 142 60.6
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 8.1e-30 134.0 146 55.5
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 3.1e-29 132.1 138 58.0
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 4.0e-29 131.7 141 59.6
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.2e-28 130.2 142 61.3
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 2.0e-28 129.4 147 55.1
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 1.6e-25 119.8 137 57.7
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 2.7e-25 119.0 137 56.9
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 2.7e-25 119.0 135 57.8
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 7.9e-25 117.5 135 57.0
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 1.3e-24 116.7 135 57.0
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 1.6e-17 93.2 140 50.7
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 5.1e-16 88.2 140 45.7
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 1.1e-15 87.0 138 44.9
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 1.1e-15 87.0 138 44.9
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.5e-15 86.7 144 43.1
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 1.5e-15 86.7 149 44.3
Aa31LG8G14660 Aethionema arabicum HOM05D005114 ORTHO05D006301 3.3e-15 85.5 128 46.1
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.6e-14 83.2 144 42.4
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 2.1e-14 82.8 137 43.1
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 2.1e-14 82.8 135 45.2
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 3.7e-14 82.0 144 41.7
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 6.3e-14 81.3 137 45.3
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 8.2e-14 80.9 143 41.3
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 8.2e-14 80.9 144 41.7
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 8.2e-14 80.9 142 43.0
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.4e-13 80.1 124 46.0
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 1.4e-13 80.1 137 42.3
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.4e-13 80.1 141 43.3
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 2.4e-13 79.3 123 47.2
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 3.1e-13 79.0 124 42.7
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 4.1e-13 78.6 124 42.7
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 5.3e-13 78.2 145 42.1
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 6.9e-13 77.8 139 44.6
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 6.9e-13 77.8 121 43.8
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 6.9e-13 77.8 137 42.3
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 1.2e-12 77.0 139 41.0
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 1.5e-12 76.6 126 42.1
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 2.0e-12 76.3 139 42.4
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 2.6e-12 75.9 124 41.9
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.6e-12 75.9 124 43.5
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 3.4e-12 75.5 151 41.1
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 4.5e-12 75.1 133 42.9
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 4.5e-12 75.1 116 44.8
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 5.9e-12 74.7 122 47.5
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 5.9e-12 74.7 122 47.5
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 7.6e-12 74.3 141 41.8
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 1.0e-11 73.9 134 42.5
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.0e-11 73.9 132 40.2
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.3e-11 73.6 113 44.2
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 1.3e-11 73.6 147 40.8
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.7e-11 73.2 113 44.2
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 1.7e-11 73.2 127 42.5
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 2.2e-11 72.8 144 37.5
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 2.2e-11 72.8 138 41.3
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 2.9e-11 72.4 127 43.3
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 3.8e-11 72.0 149 38.3
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 5.0e-11 71.6 123 42.3
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 1.9e-10 69.7 142 40.8
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 2.5e-10 69.3 125 42.4
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 2.5e-10 69.3 123 45.5
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 3.2e-10 68.9 136 39.0
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 3.2e-10 68.9 124 38.7
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 4.2e-10 68.6 126 43.7
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 5.5e-10 68.2 122 44.3
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 7.2e-10 67.8 140 38.6
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 7.2e-10 67.8 144 39.6
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 9.3e-10 67.4 137 42.3
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 1.2e-09 67.0 120 45.8
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 1.6e-09 66.6 132 40.2
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 1.6e-09 66.6 118 41.5
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 1.6e-09 66.6 133 39.1
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 4.6e-09 65.1 125 38.4
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 6.1e-09 64.7 139 43.2
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 7.9e-09 64.3 129 38.8
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 1.8e-08 63.2 123 43.9
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 3.0e-08 62.4 112 46.4
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 3.0e-08 62.4 127 40.2
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 3.9e-08 62.0 138 37.7
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 5.1e-08 61.6 125 42.4
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 5.1e-08 61.6 115 43.5
Thhalv10021664m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 6.7e-08 61.2 73 54.8
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 8.7e-08 60.8 104 43.3
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 8.7e-08 60.8 151 36.4
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.1e-07 60.5 145 38.6
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 1.1e-07 60.5 119 37.8
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.5e-07 60.1 132 33.3
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 1.9e-07 59.7 101 48.5
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 1.9e-07 59.7 116 40.5
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 2.5e-07 59.3 78 41.0
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 2.5e-07 59.3 141 34.8
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 5.7e-07 58.2 78 43.6
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 5.7e-07 58.2 129 38.0
C07p61110 Brassica napus HOM05D005114 ORTHO05D021810 9.7e-07 57.4 89 47.2
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 9.7e-07 57.4 86 50.0
BcaNung02389 Brassica carinata HOM05D005114 ORTHO05D021810 1.3e-06 57.0 89 47.2
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 1.3e-06 57.0 129 37.2
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 2.2e-06 56.2 103 36.9
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 2.8e-06 55.8 127 40.2
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 4.8e-06 55.1 121 33.9
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 8.2e-06 54.3 135 33.3


User provided reference genes

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