Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 1.4e-187 659.4 326 100.0
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 2.2e-169 599.0 326 90.5
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.1e-168 596.7 326 90.2
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 1.8e-166 589.3 326 88.7
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 2.9e-161 572.0 326 85.6
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 1.6e-159 566.2 326 85.9
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 2.3e-158 562.4 326 84.4
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 1.1e-157 560.1 326 84.4
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 4.3e-157 558.1 326 84.0
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.1e-155 553.5 327 84.4
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 4.1e-155 551.6 327 85.3
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 1.5e-154 549.7 326 82.8
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 1.5e-154 549.7 327 83.2
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 2.0e-154 549.3 327 84.7
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 2.7e-151 538.9 326 78.8
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.0e-142 510.4 306 83.7
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 4.4e-141 505.0 299 84.9
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 1.2e-138 496.9 327 77.1
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 5.7e-133 478.0 328 71.6
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 4.0e-110 402.1 323 57.9
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 3.4e-109 399.1 308 61.7
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 7.5e-109 397.9 287 63.1
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 7.5e-109 397.9 292 62.0
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 9.8e-109 397.5 327 57.5
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 2.2e-108 396.4 292 61.0
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 4.9e-108 395.2 292 61.3
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 9.2e-107 391.0 322 58.1
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 9.2e-107 391.0 280 62.5
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 1.6e-106 390.2 325 57.5
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 1.6e-106 390.2 322 58.1
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 2.7e-106 389.4 284 63.7
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 4.6e-106 388.7 292 61.3
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 2.3e-105 386.3 329 55.0
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 5.0e-105 385.2 297 59.9
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 5.0e-105 385.2 284 63.4
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 8.6e-105 384.4 333 55.9
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.1e-104 384.0 326 55.5
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 1.5e-104 383.6 284 63.0
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 5.6e-104 381.7 306 58.5
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 7.3e-104 381.3 297 59.3
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 7.3e-104 381.3 306 58.5
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 9.5e-104 380.9 286 61.2
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 9.5e-104 380.9 286 61.2
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 2.8e-103 379.4 325 57.2
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 3.6e-103 379.0 326 54.6
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 6.2e-103 378.3 286 62.9
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 1.1e-102 377.5 286 60.5
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 1.8e-102 376.7 286 60.8
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.1e-102 375.9 331 57.7
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 4.0e-102 375.6 284 62.0
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 6.8e-102 374.8 286 60.5
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 2.6e-101 372.9 285 61.8
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 7.5e-101 371.3 285 61.4
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 1.7e-100 370.2 285 61.4
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 8.3e-100 367.9 284 60.9
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 4.1e-99 365.5 250 67.6
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 4.1e-99 365.5 354 52.3
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 9.2e-99 364.4 287 59.2
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 4.6e-98 362.1 286 60.1
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 7.8e-98 361.3 256 65.2
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 1.3e-97 360.5 284 58.8
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 3.0e-97 359.4 306 57.8
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 1.9e-96 356.7 283 60.4
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 5.6e-96 355.1 283 59.4
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 9.5e-96 354.4 250 62.4
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 9.5e-96 354.4 302 56.0
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 1.2e-95 354.0 323 56.3
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 1.6e-95 353.6 305 57.0
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.6e-95 353.6 321 54.5
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 2.1e-95 353.2 281 60.1
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 2.1e-95 353.2 281 60.1
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 2.1e-95 353.2 284 57.7
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 3.6e-95 352.4 285 60.4
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 1.1e-94 350.9 282 59.2
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 2.3e-94 349.7 248 64.1
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 6.8e-94 348.2 282 58.5
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.0e-93 346.7 286 57.0
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 9.9e-93 344.4 256 62.1
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 3.7e-92 342.4 246 63.0
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 1.9e-91 340.1 228 67.5
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 5.4e-91 338.6 290 54.8
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 9.2e-91 337.8 250 62.0
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 6.0e-90 335.1 257 59.9
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 1.9e-88 330.1 250 61.6
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 4.3e-88 328.9 284 55.6
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 2.9e-84 316.2 302 54.0
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 4.6e-82 308.9 299 51.5
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 5.8e-77 292.0 287 49.5
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 9.9e-77 291.2 286 51.0
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.3e-76 290.8 286 51.0
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 3.8e-76 289.3 282 51.4
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 5.1e-73 278.9 283 50.2
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 4.3e-72 275.8 213 60.1
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 4.3e-72 275.8 195 62.1
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 7.3e-72 275.0 188 64.9
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 2.1e-71 273.5 278 47.5
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 4.8e-71 272.3 225 58.2
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 4.0e-70 269.2 278 46.0
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.9e-68 263.1 189 61.9
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 2.4e-67 260.0 279 43.7
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 3.2e-67 259.6 184 62.0
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 5.4e-67 258.8 282 48.2
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 9.3e-67 258.1 246 48.8
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 4.3e-64 249.2 157 66.9
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 4.5e-61 239.2 154 66.9
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.1e-59 234.6 153 67.3
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.3e-57 226.9 301 42.9
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.0e-52 211.5 175 57.1
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 4.6e-50 202.6 148 61.5
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 1.5e-48 197.6 258 44.6
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.2e-47 193.7 240 46.7
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.2e-47 193.7 240 45.4
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 3.9e-41 172.9 166 50.6
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 4.8e-39 166.0 217 37.3
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.5e-37 161.0 151 53.6
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 2.2e-36 157.1 114 59.6
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.4e-33 147.9 164 51.8
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.0e-33 146.7 232 39.7
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 6.7e-33 145.6 76 90.8
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.3e-32 143.3 200 41.5
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 9.7e-32 141.7 124 47.6
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 5.0e-28 129.4 119 52.1
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.1e-27 128.3 74 73.0
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 5.5e-27 125.9 127 52.8
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.6e-26 124.4 102 55.9
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 3.6e-26 123.2 140 50.0
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 3.0e-25 120.2 100 55.0
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 2.0e-24 117.5 277 29.6
AL1G44350 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 8.8e-17 92.0 119 51.3
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 3.7e-15 86.7 67 64.2
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 1.8e-14 84.3 163 35.0
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 9.4e-11 72.0 79 46.8
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 1.0e-09 68.6 80 51.2
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 5.2e-09 66.2 77 46.8
Haze_25177 Corylus avellana HOM05D005815 ORTHO05D007023 9.1e-06 55.5 40 62.5


User provided reference genes

Program Settings