Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR070930 Cardamine hirsuta HOM05D000904 ORTHO05D033438 5.1e-50 200.7 95 100.0
CARHR010450 Cardamine hirsuta HOM05D000904 ORTHO05D006931 2.9e-21 105.1 95 60.0
Thhalv10009354m.g Eutrema salsugineum HOM05D000904 ORTHO05D006931 2.9e-21 105.1 101 57.4
AL1G21050 Arabidopsis lyrata HOM05D000904 ORTHO05D006931 1.1e-20 103.2 101 55.4
A08p34030 Brassica napus HOM05D000904 ORTHO05D006931 1.1e-20 103.2 100 56.0
BraA08t35316Z Brassica rapa HOM05D000904 ORTHO05D005281 1.1e-20 103.2 100 56.0
BcaNung05228 Brassica carinata HOM05D000904 ORTHO05D006931 1.5e-20 102.8 101 54.5
BcaNung05166 Brassica carinata HOM05D000904 ORTHO05D006931 1.9e-20 102.4 101 54.5
C08p13580 Brassica napus HOM05D000904 ORTHO05D006931 1.9e-20 102.4 101 54.5
BolC8t48998H Brassica oleracea HOM05D000904 ORTHO05D005281 1.9e-20 102.4 101 54.5
Aa31LG1G4600 Aethionema arabicum HOM05D000904 ORTHO05D006931 2.5e-20 102.1 101 54.5
AT1G10320 Arabidopsis thaliana HOM05D000904 ORTHO05D006931 2.5e-20 102.1 101 55.4
MD15G1442300 Malus domestica HOM05D000904 ORTHO05D006931 4.2e-20 101.3 97 53.6
THA.LOC104810192 Tarenaya hassleriana HOM05D000904 ORTHO05D006931 2.7e-19 98.6 101 52.5
COL.COLO4_22855 Corchorus olitorius HOM05D000904 ORTHO05D006931 3.6e-19 98.2 101 50.5
QL02p103277 Quercus lobata HOM05D000904 ORTHO05D006931 3.6e-19 98.2 99 52.5
CiPaw.05G001900 Carya illinoinensis HOM05D000904 ORTHO05D006931 4.7e-19 97.8 101 51.5
MBI19_g32709_MAGBIO Magnolia biondii HOM05D000904 ORTHO05D006931 4.7e-19 97.8 101 51.5
Prupe.1G585000 Prunus persica HOM05D000904 ORTHO05D006931 4.7e-19 97.8 101 49.5
TWI59G0191 Tripterygium wilfordii HOM05D000904 ORTHO05D006931 4.7e-19 97.8 101 51.5
Dinv29628 Davidia involucrata HOM05D000904 ORTHO05D006931 6.1e-19 97.4 101 50.5
Duzib160G0493 Durio zibethinus HOM05D000904 ORTHO05D006931 6.1e-19 97.4 101 50.5
TAR628G1213 Trochodendron aralioides HOM05D000904 ORTHO05D006931 1.0e-18 96.7 95 52.6
Nn5g27250 Nelumbo nucifera HOM05D000904 ORTHO05D006931 1.8e-18 95.9 101 49.5
Actinidia26193 Actinidia chinensis HOM05D000904 ORTHO05D006931 2.3e-18 95.5 101 48.5
CANSAT01G3012 Cannabis sativa HOM05D000904 ORTHO05D006931 3.0e-18 95.1 101 50.5
FvH4_5g28020 Fragaria vesca HOM05D000904 ORTHO05D006931 5.2e-18 94.4 100 49.0
FAN18G0255 Fragaria x ananassa HOM05D000904 ORTHO05D006931 5.2e-18 94.4 100 49.0
HPP92_011424 Vanilla planifolia HOM05D000904 ORTHO05D006931 5.2e-18 94.4 96 52.1
HPP92_011434 Vanilla planifolia HOM05D000904 ORTHO05D006931 5.2e-18 94.4 101 50.5
HanXRQChr12g0381671 Helianthus annuus HOM05D000904 ORTHO05D006931 6.8e-18 94.0 98 51.0
C05p08480 Brassica napus HOM05D000904 ORTHO05D033438 8.8e-18 93.6 105 50.5
Ciclev10003415m.g Citrus clementina HOM05D000904 ORTHO05D006931 1.2e-17 93.2 101 47.5
Phvul.006G221300 Phaseolus vulgaris HOM05D000904 ORTHO05D006931 1.5e-17 92.8 101 48.5
GSVIVG01023150001 Vitis vinifera HOM05D000904 ORTHO05D006931 1.5e-17 92.8 96 51.0
BolC5t29598H Brassica oleracea HOM05D000904 ORTHO05D033438 2.0e-17 92.4 99 52.5
vmacro19831 Vaccinium macrocarpon HOM05D000904 ORTHO05D006931 2.0e-17 92.4 101 47.5
Cpa.g.sc173.41 Carica papaya HOM05D000904 ORTHO05D006931 2.6e-17 92.0 101 49.5
Glyma.08G162800 Glycine max HOM05D000904 ORTHO05D006931 2.6e-17 92.0 101 48.5
Sc06g0007800 Simmondsia chinensis HOM05D000904 ORTHO05D006931 2.6e-17 92.0 101 45.5
Cfa004448 Carpinus fangiana HOM05D000904 ORTHO05D006931 3.4e-17 91.7 101 48.5
Haze_09988 Corylus avellana HOM05D000904 ORTHO05D006931 3.4e-17 91.7 101 48.5
Medtr2g005450 Medicago truncatula HOM05D000904 ORTHO05D006931 3.4e-17 91.7 101 48.5
RcHm_v2.0_Chr7g0221391 Rosa chinensis HOM05D000904 ORTHO05D006931 3.4e-17 91.7 99 47.5
Glyma.15G244700 Glycine max HOM05D000904 ORTHO05D006931 5.7e-17 90.9 104 48.1
Lj5g0025119 Lotus japonicus HOM05D000904 ORTHO05D006931 5.7e-17 90.9 101 47.5
Lalb_Chr20g0123821 Lupinus albus HOM05D000904 ORTHO05D006931 5.7e-17 90.9 95 50.5
Manes.10G111800 Manihot esculenta HOM05D000904 ORTHO05D006931 5.7e-17 90.9 101 48.5
Atru.chr3.2070 Acer truncatum HOM05D000904 ORTHO05D006931 7.5e-17 90.5 101 47.5
Potri.004G228600 Populus trichocarpa HOM05D000904 ORTHO05D006931 7.5e-17 90.5 101 48.5
DCAR_001720 Daucus carota HOM05D000904 ORTHO05D006931 9.8e-17 90.1 94 50.0
Hund00892 Selenicereus undatus HOM05D000904 ORTHO05D006931 9.8e-17 90.1 95 49.5
PGR042G3242 Punica granatum HOM05D000904 ORTHO05D006931 1.3e-16 89.7 101 46.5
Atru.chr6.324 Acer truncatum HOM05D000904 ORTHO05D006931 2.2e-16 89.0 101 46.5
Eucgr.G00080 Eucalyptus grandis HOM05D000904 ORTHO05D006931 2.2e-16 89.0 101 45.5
ATR1089G094 Amborella trichopoda HOM05D000904 ORTHO05D006931 2.8e-16 88.6 101 47.5
MELO3C016469.2 Cucumis melo HOM05D000904 ORTHO05D006931 2.8e-16 88.6 101 44.6
CsaV3_3G006640 Cucumis sativus L. HOM05D000904 ORTHO05D006931 2.8e-16 88.6 101 44.6
SGA_v2.0_scaffold131G34405 Striga asiatica HOM05D000904 ORTHO05D006931 2.8e-16 88.6 101 46.5
Lsat_1_v5_gn_9_121820 Lactuca sativa HOM05D000904 ORTHO05D006931 3.7e-16 88.2 101 47.5
Psat1g223160 Pisum sativum HOM05D000904 ORTHO05D006931 4.8e-16 87.8 99 47.5
Peaxi162Scf00011g01832 Petunia axillaris HOM05D000904 ORTHO05D006931 6.3e-16 87.4 101 45.5
Aqoxy6G00043 Aquilegia oxysepala HOM05D000904 ORTHO05D006931 8.3e-16 87.0 101 43.6
arahy.Tifrunner.gnm1.ann1.V0D4VX Arachis hypogaea HOM05D000904 ORTHO05D006931 8.3e-16 87.0 101 46.5
Cc02_g23540 Coffea canephora HOM05D000904 ORTHO05D006931 8.3e-16 87.0 97 47.4
CSS0030434 Camellia sinensis var. sinensis HOM05D000904 ORTHO05D006931 1.4e-15 86.3 91 48.4
Sed0005680 Sechium edule HOM05D000904 ORTHO05D006931 1.4e-15 86.3 95 48.4
arahy.Tifrunner.gnm1.ann1.7BJ6UQ Arachis hypogaea HOM05D000904 ORTHO05D006931 1.8e-15 85.9 95 48.4
arahy.Tifrunner.gnm1.ann1.AE80VE Arachis hypogaea HOM05D000904 ORTHO05D006931 1.8e-15 85.9 95 48.4
Ca_00027_v3 Cicer arietinum L. HOM05D000904 ORTHO05D006931 2.4e-15 85.5 101 45.5
Oeu043612.1 Olea europaea HOM05D000904 ORTHO05D006931 2.4e-15 85.5 95 47.4
PSO063G1559 Papaver somniferum HOM05D000904 ORTHO05D006931 2.4e-15 85.5 100 44.0
PSO421G0485 Papaver somniferum HOM05D000904 ORTHO05D006931 2.4e-15 85.5 100 44.0
AUR62021311 Chenopodium quinoa HOM05D000904 ORTHO05D006931 3.1e-15 85.1 101 43.6
VMungo0540G1910 Vigna mungo HOM05D000904 ORTHO05D006931 4.1e-15 84.7 92 47.8
Nitab4.5_0004668g0060 Nicotiana tabacum HOM05D000904 ORTHO05D006931 5.4e-15 84.3 94 46.8
Nitab4.5_0008306g0010 Nicotiana tabacum HOM05D000904 ORTHO05D006931 5.4e-15 84.3 94 46.8
Zm00001eb243910 Zea mays HOM05D000904 ORTHO05D006931 7.0e-15 84.0 101 44.6
PGSC0003DMG400020705 Solanum tuberosum HOM05D000904 ORTHO05D006931 9.1e-15 83.6 101 43.6
AUR62043443 Chenopodium quinoa HOM05D000904 ORTHO05D006931 1.2e-14 83.2 102 42.2
ClCG10G007430 Citrullus lanatus HOM05D000904 ORTHO05D006931 1.2e-14 83.2 92 46.7
TPR.G2096 Trifolium pratense HOM05D000904 ORTHO05D006931 1.2e-14 83.2 92 47.8
CAN.G855.47 Capsicum annuum HOM05D000904 ORTHO05D006931 1.6e-14 82.8 101 43.6
Sopen01g045500 Solanum pennellii HOM05D000904 ORTHO05D006931 2.0e-14 82.4 95 45.3
Migut.B00725 Erythranthe guttata HOM05D000904 ORTHO05D006931 2.7e-14 82.0 101 41.6
Solyc01g103090.4 Solanum lycopersicum HOM05D000904 ORTHO05D006931 2.7e-14 82.0 101 42.6
Ciclev10024033m.g Citrus clementina HOM05D000904 ORTHO05D006931 3.5e-14 81.6 91 47.3
SEGI_25881 Sequoiadendron giganteum HOM05D000904 ORTHO05D006931 4.5e-14 81.3 95 48.4
BcaC05g24900 Brassica carinata HOM05D000904 ORTHO05D006931 1.5e-12 76.3 89 50.6
Pp3c3_25240 Physcomitrium patens HOM05D000904 ORTHO05D006931 1.2e-11 73.2 101 38.6
Mapoly0079s0042 Marchantia polymorpha HOM05D000904 ORTHO05D006931 2.8e-11 72.0 100 41.0
AagrBONN_evm.TU.Sc2ySwM_228.1260 Anthoceros agrestis HOM05D000904 ORTHO05D006931 1.8e-10 69.3 95 40.0
CDE05G0469 Ceratophyllum demersum HOM05D000904 ORTHO05D006931 8.3e-08 60.5 37 70.3
FAN08G0588 Fragaria x ananassa HOM05D000904 ORTHO05D006931 2.4e-07 58.9 36 75.0
RcHm_v2.0_Chr6g0272531 Rosa chinensis HOM05D000904 ORTHO05D006931 4.1e-07 58.2 41 58.5
Duzib235G0267 Durio zibethinus HOM05D000734 ORTHO05D002090 5.4e-07 57.8 37 70.3
unitig_578.g15961 Utricularia gibba HOM05D000904 ORTHO05D006931 9.2e-07 57.0 37 67.6
Sp1g08920 Schrenkiella parvula HOM05D000904 ORTHO05D006931 2.0e-06 55.8 25 96.0


User provided reference genes

Program Settings