Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 9.3e-181 637.1 411 100.0
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 5.3e-144 515.0 449 69.3
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 9.1e-136 487.6 417 67.9
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 1.3e-126 457.2 444 67.1
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 2.9e-118 429.5 417 65.5
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 2.0e-111 406.8 481 54.5
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 2.9e-97 359.8 456 54.2
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 2.4e-96 356.7 438 55.7
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 5.4e-96 355.5 439 55.6
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 9.5e-93 344.7 451 57.9
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 1.1e-91 341.3 452 54.6
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 2.4e-88 330.1 446 48.2
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 6.0e-71 272.3 437 49.4
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 7.4e-61 238.8 438 37.4
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 1.8e-59 234.2 440 35.9
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 9.0e-59 231.9 410 37.6
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 5.8e-58 229.2 421 39.9
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 7.6e-58 228.8 443 41.8
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 2.2e-57 227.3 439 38.7
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 2.9e-57 226.9 431 40.1
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 3.2e-56 223.4 422 41.9
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 5.5e-56 222.6 425 36.0
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 7.1e-56 222.2 434 36.9
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 1.6e-55 221.1 265 54.0
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 1.3e-54 218.0 436 40.1
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 3.9e-54 216.5 425 37.9
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 5.1e-54 216.1 442 39.6
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 6.7e-54 215.7 258 48.8
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 6.7e-54 215.7 433 42.5
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 1.5e-53 214.5 440 35.9
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 5.6e-53 212.6 456 36.6
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 5.6e-53 212.6 427 36.8
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 2.8e-52 210.3 422 35.5
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 3.7e-52 209.9 258 52.3
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 3.7e-52 209.9 248 50.4
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 4.0e-51 206.5 275 53.5
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 6.9e-51 205.7 417 36.5
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 9.0e-51 205.3 439 36.0
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 1.2e-50 204.9 421 35.9
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 2.0e-50 204.1 436 37.6
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 4.5e-50 203.0 426 35.4
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 5.8e-50 202.6 272 47.4
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 7.6e-50 202.2 435 43.7
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 1.7e-49 201.1 424 36.6
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 2.9e-49 200.3 421 39.4
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 2.9e-49 200.3 432 34.5
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 4.9e-49 199.5 206 48.5
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 1.4e-48 198.0 415 39.5
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 1.9e-48 197.6 427 34.7
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 1.9e-48 197.6 219 53.4
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 3.2e-48 196.8 448 34.8
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 7.1e-48 195.7 438 35.8
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 9.3e-48 195.3 266 46.2
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 1.2e-47 194.9 420 34.3
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 1.2e-47 194.9 456 45.2
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 2.7e-47 193.7 440 37.0
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 4.6e-47 193.0 430 32.6
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 4.6e-47 193.0 449 35.4
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 6.0e-47 192.6 439 34.4
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 6.0e-47 192.6 442 32.4
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 6.0e-47 192.6 467 37.3
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 6.0e-47 192.6 441 36.5
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 1.0e-46 191.8 265 47.5
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 2.3e-46 190.7 436 34.6
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 3.0e-46 190.3 433 34.6
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 8.7e-46 188.7 252 46.8
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 1.5e-45 188.0 444 36.0
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 1.5e-45 188.0 430 30.9
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 4.3e-45 186.4 419 42.2
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 5.7e-45 186.0 246 43.1
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 5.7e-45 186.0 210 52.9
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 2.6e-42 177.2 204 50.0
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 1.0e-41 175.3 425 35.3
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 2.2e-41 174.1 247 49.8
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 2.2e-41 174.1 263 41.4
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.2e-39 168.3 277 38.3
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 1.6e-39 167.9 206 47.6
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 1.6e-39 167.9 433 33.7
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 2.1e-39 167.5 445 31.7
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 4.6e-39 166.4 247 43.3
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 5.1e-38 162.9 260 40.4
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 8.7e-38 162.2 282 39.0
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 3.3e-37 160.2 279 42.7
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 1.6e-36 157.9 514 27.8
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 9.0e-35 152.1 348 31.9
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 2.0e-34 151.0 241 41.1
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.2e-33 147.5 162 48.1
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 6.5e-33 146.0 433 29.6
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 2.1e-31 141.0 432 39.4
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 3.9e-30 136.7 138 51.4
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.1e-29 135.2 424 29.0
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 1.7e-28 131.3 428 32.0
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 3.7e-28 130.2 256 37.5
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 7.9e-23 112.5 84 56.0
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 2.8e-20 104.0 178 36.0
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 9.1e-19 99.0 264 33.0
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 3.8e-17 93.6 266 37.6
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 1.1e-16 92.0 278 29.1
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 4.5e-10 70.1 256 38.3
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.9e-08 64.7 64 46.9
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.9e-08 64.7 64 46.9
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 1.4e-06 58.5 252 27.0
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.3e-06 57.8 42 64.3
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 3.0e-06 57.4 43 62.8


User provided reference genes

Program Settings