Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR061210 Cardamine hirsuta HOM05D003134 ORTHO05D003500 2.2e-63 245.7 149 100.0
Sp5g23500 Schrenkiella parvula HOM05D003134 ORTHO05D003500 3.4e-48 195.3 155 71.6
BcaB03g15807 Brassica carinata HOM05D003134 ORTHO05D003500 1.7e-47 193.0 151 74.8
BolC2t08556H Brassica oleracea HOM05D003134 ORTHO05D003500 1.4e-46 189.9 155 71.0
Thhalv10019521m.g Eutrema salsugineum HOM05D003134 ORTHO05D003500 1.9e-46 189.5 156 73.7
C02p24530 Brassica napus HOM05D003134 ORTHO05D003500 6.0e-45 184.5 155 69.7
Carub.0002s1492 Capsella rubella HOM05D003134 ORTHO05D003500 1.0e-44 183.7 152 77.6
BcaB05g24377 Brassica carinata HOM05D003134 ORTHO05D003500 5.0e-44 181.4 155 68.4
BcaC08g46286 Brassica carinata HOM05D003134 ORTHO05D003500 8.6e-44 180.6 151 73.5
A07p34840 Brassica napus HOM05D003134 ORTHO05D003500 1.9e-43 179.5 152 77.0
BraA07t31102Z Brassica rapa HOM05D003134 ORTHO05D003500 1.9e-43 179.5 152 77.0
AL2G27290 Arabidopsis lyrata HOM05D003134 ORTHO05D003500 5.6e-43 177.9 151 73.5
A02p14980 Brassica napus HOM05D003134 ORTHO05D003500 5.6e-43 177.9 155 67.7
BraA02t06565Z Brassica rapa HOM05D003134 ORTHO05D003500 5.6e-43 177.9 155 67.7
C06p41530 Brassica napus HOM05D003134 ORTHO05D003500 1.6e-42 176.4 152 74.3
BolC6t39271H Brassica oleracea HOM05D003134 ORTHO05D003500 1.6e-42 176.4 152 74.3
BcaC08g46282 Brassica carinata HOM05D003134 ORTHO05D003500 8.1e-42 174.1 152 73.7
A07p32020 Brassica napus HOM05D003134 ORTHO05D003500 1.2e-40 170.2 155 66.5
BraA07t30832Z Brassica rapa HOM05D003134 ORTHO05D003500 1.2e-40 170.2 155 66.5
BcaC08g45971 Brassica carinata HOM05D003134 ORTHO05D003500 5.8e-40 167.9 157 65.6
C06p37610 Brassica napus HOM05D003134 ORTHO05D003500 5.8e-40 167.9 157 65.6
BolC6t38864H Brassica oleracea HOM05D003134 ORTHO05D003500 5.8e-40 167.9 157 65.6
BcaB03g15416 Brassica carinata HOM05D003134 ORTHO05D003500 2.1e-37 159.5 155 63.9
AT1G68430 Arabidopsis thaliana HOM05D003134 ORTHO05D003500 1.2e-34 150.2 151 66.9
THA.LOC104808293 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 1.4e-30 136.7 165 53.3
Aa31LG4G14620 Aethionema arabicum HOM05D003134 ORTHO05D003500 2.7e-29 132.5 164 54.3
Sabra10G0091400 Salix brachista HOM05D003134 ORTHO05D003500 3.6e-18 95.5 155 45.8
Thecc.02G223300 Theobroma cacao HOM05D003134 ORTHO05D003500 1.1e-17 94.0 164 46.3
TWI31G0745 Tripterygium wilfordii HOM05D003134 ORTHO05D003500 1.4e-17 93.6 170 41.2
Cpa.g.sc65.57 Carica papaya HOM05D003134 ORTHO05D003500 2.4e-17 92.8 172 48.8
Duzib251G0591 Durio zibethinus HOM05D003134 ORTHO05D003500 1.2e-16 90.5 163 41.7
COL.COLO4_32156 Corchorus olitorius HOM05D003134 ORTHO05D003500 1.7e-15 86.7 166 43.4
Ciclev10016989m.g Citrus clementina HOM05D003134 ORTHO05D003500 3.8e-15 85.5 170 41.2
Gohir.D02G171600 Gossypium hirsutum HOM05D003134 ORTHO05D003500 3.8e-15 85.5 164 42.1
Gorai.005G193000 Gossypium raimondii HOM05D003134 ORTHO05D003500 3.8e-15 85.5 164 42.1
Gohir.A03G148500 Gossypium hirsutum HOM05D003134 ORTHO05D003500 1.1e-14 84.0 164 41.5
Cfa015853 Carpinus fangiana HOM05D003134 ORTHO05D003500 1.4e-14 83.6 159 40.9
Cfa015852 Carpinus fangiana HOM05D003134 ORTHO05D003500 1.9e-14 83.2 159 40.3
Manes.06G065600 Manihot esculenta HOM05D003134 ORTHO05D003500 4.2e-14 82.0 160 39.4
Cfa015849 Carpinus fangiana HOM05D003134 ORTHO05D003500 5.4e-14 81.6 158 39.9
Potri.010G121300 Populus trichocarpa HOM05D003134 ORTHO05D003500 5.4e-14 81.6 158 40.5
RcHm_v2.0_Chr4g0434621 Rosa chinensis HOM05D003134 ORTHO05D003500 9.3e-14 80.9 153 43.1
MD16G1038900 Malus domestica HOM05D003134 ORTHO05D003500 1.2e-13 80.5 151 39.7
CiPaw.05G241000 Carya illinoinensis HOM05D003134 ORTHO05D003500 2.7e-13 79.3 171 39.2
Prupe.1G315800 Prunus persica HOM05D003134 ORTHO05D003500 2.7e-13 79.3 153 39.9
QL01p040313 Quercus lobata HOM05D003134 ORTHO05D003500 2.7e-13 79.3 176 39.8
FvH4_4g26860 Fragaria vesca HOM05D003134 ORTHO05D003500 7.9e-13 77.8 153 41.8
TAR374G1690 Trochodendron aralioides HOM05D003134 ORTHO05D003500 7.9e-13 77.8 158 36.7
FAN22G0900 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.0e-12 77.4 153 41.2
Hma1.2p1_1109F.1_g258190 Hydrangea macrophylla HOM05D003134 ORTHO05D003500 1.0e-12 77.4 160 39.4
CSS0042149 Camellia sinensis var. sinensis HOM05D003134 ORTHO05D003500 1.3e-12 77.0 168 36.9
TAR433G0003 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.8e-12 76.6 158 36.7
FAN12G3405 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.3e-12 76.3 152 40.8
Glyma.02G088600 Glycine max HOM05D003134 ORTHO05D003500 5.1e-12 75.1 157 49.0
CANSAT78G1475 Cannabis sativa HOM05D003134 ORTHO05D003500 6.7e-12 74.7 172 36.6
Lalb_Chr10g0091341 Lupinus albus HOM05D003134 ORTHO05D003500 6.7e-12 74.7 150 45.3
MD13G1036300 Malus domestica HOM05D003134 ORTHO05D003500 8.7e-12 74.3 151 39.7
Cpa.g.sc170.42 Carica papaya HOM05D003134 ORTHO05D003500 1.1e-11 73.9 175 39.4
Duzib268G0372 Durio zibethinus HOM05D003134 ORTHO05D003500 1.1e-11 73.9 164 41.5
Glyma.18G294900 Glycine max HOM05D003134 ORTHO05D003500 1.9e-11 73.2 156 48.7
Prupe.3G146400 Prunus persica HOM05D003134 ORTHO05D003500 1.9e-11 73.2 171 36.8
Glyma.20G119200 Glycine max HOM05D003134 ORTHO05D003500 3.3e-11 72.4 151 38.4
Rhsim08G0083300 Rhododendron simsii HOM05D003134 ORTHO05D003500 3.3e-11 72.4 163 36.2
VMungo0720G1250 Vigna mungo HOM05D000260 ORTHO05D000318 3.3e-11 72.4 152 39.5
Atru.chr1.1630 Acer truncatum HOM05D003134 ORTHO05D003500 4.3e-11 72.0 162 36.4
Lalb_Chr02g0145791 Lupinus albus HOM05D003134 ORTHO05D003500 4.3e-11 72.0 155 38.7
MD17G1247700 Malus domestica HOM05D003134 ORTHO05D003500 4.3e-11 72.0 169 36.1
TPR.G36596 Trifolium pratense HOM05D003134 ORTHO05D003500 4.3e-11 72.0 162 37.7
Lj4P188T25 Lonicera japonica HOM05D003134 ORTHO05D003500 5.6e-11 71.6 157 39.5
Lj5g0013847 Lotus japonicus HOM05D003134 ORTHO05D003500 5.6e-11 71.6 167 40.7
Ciclev10013038m.g Citrus clementina HOM05D003134 ORTHO05D003500 7.4e-11 71.2 160 36.9
Phvul.007G030600 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 9.6e-11 70.9 152 40.8
Medtr1g110190 Medicago truncatula HOM05D003134 ORTHO05D003500 1.3e-10 70.5 154 39.0
SalBow5G3107 Salvia bowleyana HOM05D003134 ORTHO05D003500 1.3e-10 70.5 159 38.4
SalBow5G4218 Salvia bowleyana HOM05D003134 ORTHO05D003500 1.3e-10 70.5 159 38.4
Sabra04G0066000 Salix brachista HOM05D003134 ORTHO05D003500 1.6e-10 70.1 157 38.2
Sc10g0001080 Simmondsia chinensis HOM05D003134 ORTHO05D003500 1.6e-10 70.1 160 43.8
ClCG11G007810 Citrullus lanatus HOM05D003134 ORTHO05D003500 2.1e-10 69.7 170 34.7
Lsat_1_v5_gn_3_80541 Lactuca sativa HOM05D003134 ORTHO05D003500 2.1e-10 69.7 158 38.0
Oeu012575.1 Olea europaea HOM05D003134 ORTHO05D003500 2.1e-10 69.7 166 37.3
PGR042G1462 Punica granatum HOM05D003134 ORTHO05D003500 2.1e-10 69.7 160 37.5
Oeu012577.1 Olea europaea HOM05D003134 ORTHO05D003500 2.8e-10 69.3 166 36.1
ClCG01G005860 Citrullus lanatus HOM05D003134 ORTHO05D003500 3.7e-10 68.9 162 35.8
CANSAT01G0067 Cannabis sativa HOM05D003134 ORTHO05D003500 4.8e-10 68.6 181 34.3
Nn3g17932 Nelumbo nucifera HOM05D003134 ORTHO05D003500 4.8e-10 68.6 161 34.8
MELO3C008147.2 Cucumis melo HOM05D003134 ORTHO05D003500 6.2e-10 68.2 170 37.1
FAN07G2257 Fragaria x ananassa HOM05D003134 ORTHO05D003500 6.2e-10 68.2 148 39.2
Psat3g098080 Pisum sativum HOM05D003134 ORTHO05D003500 6.2e-10 68.2 164 40.2
DCAR_021449 Daucus carota HOM05D003134 ORTHO05D003500 8.1e-10 67.8 157 36.3
Dinv33962 Davidia involucrata HOM05D003134 ORTHO05D003500 8.1e-10 67.8 170 36.5
Medtr7g082520 Medicago truncatula HOM05D003134 ORTHO05D003500 1.4e-09 67.0 165 35.8
Sed0003377 Sechium edule HOM05D003134 ORTHO05D003500 1.8e-09 66.6 160 35.0
CsaV3_2G033780 Cucumis sativus L. HOM05D003134 ORTHO05D003500 2.4e-09 66.2 172 35.5
SGA_v2.0_scaffold49G18114 Striga asiatica HOM05D003134 ORTHO05D003500 2.4e-09 66.2 159 39.0
Oeu039736.1 Olea europaea HOM05D003134 ORTHO05D003500 3.1e-09 65.9 167 35.9
PSO170G0811 Papaver somniferum HOM05D003134 ORTHO05D003500 3.1e-09 65.9 168 33.3
CsaV3_5G028830 Cucumis sativus L. HOM05D003134 ORTHO05D003500 4.0e-09 65.5 157 35.7
Potri.017G117866 Populus trichocarpa HOM05D003134 ORTHO05D003500 4.0e-09 65.5 157 45.9
Solyc02g086260.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 4.0e-09 65.5 168 35.7
VMungo1383G0351 Vigna mungo HOM05D003134 ORTHO05D003500 4.0e-09 65.5 159 43.4
Cc07_g08620 Coffea canephora HOM05D003134 ORTHO05D003500 5.3e-09 65.1 166 36.1
Manes.02G070500 Manihot esculenta HOM05D003134 ORTHO05D003500 5.3e-09 65.1 155 34.8
Psat6g225360 Pisum sativum HOM05D003134 ORTHO05D003500 5.3e-09 65.1 154 39.0
Sed0007756 Sechium edule HOM05D003134 ORTHO05D003500 5.3e-09 65.1 161 36.0
Sopen03g007090 Solanum pennellii HOM05D003134 ORTHO05D003500 5.3e-09 65.1 164 36.0
Dinv34801 Davidia involucrata HOM05D003134 ORTHO05D003500 6.9e-09 64.7 166 36.7
FAN17G2365 Fragaria x ananassa HOM05D003134 ORTHO05D003500 6.9e-09 64.7 150 38.7
FAN03G2307 Fragaria x ananassa HOM05D003134 ORTHO05D003500 9.0e-09 64.3 167 34.7
Lj1g0014230 Lotus japonicus HOM05D003134 ORTHO05D003500 9.0e-09 64.3 172 40.1
Solyc03g034300.1 Solanum lycopersicum HOM05D003134 ORTHO05D003500 9.0e-09 64.3 161 36.0
PGSC0003DMG400002449 Solanum tuberosum HOM05D003134 ORTHO05D003500 1.2e-08 63.9 175 33.7
TAR622G0779 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.2e-08 63.9 162 34.6
TAR622G1269 Trochodendron aralioides HOM05D003134 ORTHO05D003500 1.2e-08 63.9 162 34.6
Ca_08085_v3 Cicer arietinum L. HOM05D003134 ORTHO05D003500 1.5e-08 63.5 160 35.0
PGR119G2525 Punica granatum HOM05D003134 ORTHO05D003500 1.5e-08 63.5 158 36.7
FAN14G3652 Fragaria x ananassa HOM05D003134 ORTHO05D003500 2.6e-08 62.8 168 33.9
PSO017G0284 Papaver somniferum HOM05D003134 ORTHO05D003500 2.6e-08 62.8 168 33.3
Potri.008G123800 Populus trichocarpa HOM05D003134 ORTHO05D003500 2.6e-08 62.8 92 48.9
Nitab4.5_0000753g0120 Nicotiana tabacum HOM05D003134 ORTHO05D003500 3.4e-08 62.4 88 48.9
Phvul.008G007800 Phaseolus vulgaris HOM05D003134 ORTHO05D003500 3.4e-08 62.4 150 45.3
PGSC0003DMG400024380 Solanum tuberosum HOM05D003134 ORTHO05D003500 3.4e-08 62.4 175 33.1
FAN12G3727 Fragaria x ananassa HOM05D003134 ORTHO05D003500 4.5e-08 62.0 81 51.9
Sp7g03820 Schrenkiella parvula HOM05D003134 ORTHO05D003500 5.8e-08 61.6 165 35.8
Sed0004988 Sechium edule HOM05D003134 ORTHO05D003500 5.8e-08 61.6 150 35.3
Peaxi162Scf00104g00142 Petunia axillaris HOM05D003134 ORTHO05D003500 7.6e-08 61.2 153 37.9
SalBow3G2725 Salvia bowleyana HOM05D003134 ORTHO05D003500 7.6e-08 61.2 160 38.1
unitig_0.g841 Utricularia gibba HOM05D003134 ORTHO05D003500 7.6e-08 61.2 149 30.9
Haze_14180 Corylus avellana HOM05D003134 ORTHO05D003500 9.9e-08 60.8 174 33.3
EL10Ac2g04546 Beta vulgaris HOM05D003134 ORTHO05D003500 1.3e-07 60.5 174 32.2
Actinidia17642 Actinidia chinensis HOM05D003134 ORTHO05D003500 1.7e-07 60.1 153 36.6
FAN10G2348 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.7e-07 60.1 168 36.9
FAN10G3294 Fragaria x ananassa HOM05D000266 ORTHO05D000765 1.7e-07 60.1 168 37.5
FAN23G1965 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.7e-07 60.1 168 37.5
Oeu008433.1 Olea europaea HOM05D003134 ORTHO05D003500 2.2e-07 59.7 169 34.9
Peaxi162Scf00394g00095 Petunia axillaris HOM05D003134 ORTHO05D003500 2.2e-07 59.7 91 42.9
Potri.004G097200 Populus trichocarpa HOM05D003134 ORTHO05D003500 2.2e-07 59.7 157 42.0
THA.LOC104823851 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 2.2e-07 59.7 169 36.1
MELO3C005343.2 Cucumis melo HOM05D003134 ORTHO05D003500 2.9e-07 59.3 158 36.1
HanXRQChr12g0375681 Helianthus annuus HOM05D003134 ORTHO05D003500 2.9e-07 59.3 166 34.3
ATR1125G046 Amborella trichopoda HOM05D003134 ORTHO05D003500 3.8e-07 58.9 165 31.5
FAN28G2684 Fragaria x ananassa HOM05D003134 ORTHO05D003500 3.8e-07 58.9 168 37.5
Nitab4.5_0000625g0110 Nicotiana tabacum HOM05D003134 ORTHO05D003500 3.8e-07 58.9 152 32.9
RcHm_v2.0_Chr1g0326241 Rosa chinensis HOM05D003134 ORTHO05D003500 3.8e-07 58.9 178 33.1
AUR62009019 Chenopodium quinoa HOM05D003134 ORTHO05D003500 4.9e-07 58.5 178 33.1
Migut.H00233 Erythranthe guttata HOM05D003134 ORTHO05D003500 4.9e-07 58.5 173 32.9
AUR62023283 Chenopodium quinoa HOM05D003134 ORTHO05D003500 6.4e-07 58.2 178 31.5
Lsat_1_v5_gn_2_81120 Lactuca sativa HOM05D003134 ORTHO05D003500 6.4e-07 58.2 163 38.0
CiPaw.03G063500 Carya illinoinensis HOM05D003134 ORTHO05D003500 8.4e-07 57.8 185 33.5
FAN02G1640 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.1e-06 57.4 165 33.9
Manes.01G112200 Manihot esculenta HOM05D003134 ORTHO05D003500 1.1e-06 57.4 163 33.1
PGR004G0132 Punica granatum HOM05D003134 ORTHO05D003500 1.1e-06 57.4 164 31.7
Migut.L00500 Erythranthe guttata HOM05D003134 ORTHO05D003500 1.4e-06 57.0 172 36.6
FAN01G0579 Fragaria x ananassa HOM05D003134 ORTHO05D003500 1.4e-06 57.0 168 33.9
Cfa007900 Carpinus fangiana HOM05D003134 ORTHO05D003500 1.9e-06 56.6 176 31.8
MBI16_g37123_MAGBIO Magnolia biondii HOM05D003134 ORTHO05D003500 2.4e-06 56.2 160 35.0
Nitab4.5_0015828g0010 Nicotiana tabacum HOM05D003134 ORTHO05D003500 2.4e-06 56.2 168 32.7
THA.LOC104805579 Tarenaya hassleriana HOM05D003134 ORTHO05D003500 2.4e-06 56.2 182 32.4
ECA238G3055 Erigeron canadensis HOM05D003134 ORTHO05D003500 3.2e-06 55.8 167 34.1
Gohir.A11G165400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 3.2e-06 55.8 173 32.4
Gohir.D11G171400 Gossypium hirsutum HOM05D003134 ORTHO05D003500 3.2e-06 55.8 171 33.9
Gorai.007G183800 Gossypium raimondii HOM05D003134 ORTHO05D003500 3.2e-06 55.8 171 33.9
FvH4_7g03610 Fragaria vesca HOM05D003134 ORTHO05D003500 5.5e-06 55.1 167 36.5
FAN06G4960 Fragaria x ananassa HOM05D003134 ORTHO05D003500 5.5e-06 55.1 167 36.5
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 5.5e-06 55.1 94 41.5
FAN16G3541 Fragaria x ananassa HOM05D003134 ORTHO05D003500 9.3e-06 54.3 168 36.9
Oeu036853.1 Olea europaea HOM05D003134 ORTHO05D003500 9.3e-06 54.3 168 32.1
QL02p049588 Quercus lobata HOM05D003134 ORTHO05D003500 9.3e-06 54.3 181 32.6


User provided reference genes

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