Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 1.4e-284 982.2 493 100.0
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 2.2e-253 878.6 492 90.9
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 6.0e-251 870.5 492 90.9
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 4.7e-248 860.9 492 89.4
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 2.1e-240 835.5 495 85.7
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 1.4e-239 832.8 493 85.0
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 2.4e-239 832.0 492 85.6
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 2.9e-237 825.1 495 84.8
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 3.9e-226 788.1 495 81.6
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.1e-225 786.6 431 91.6
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 1.1e-223 780.0 495 81.2
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 5.8e-222 774.2 494 81.0
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 9.9e-222 773.5 428 91.1
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 4.8e-208 728.0 504 75.8
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 1.5e-185 653.3 506 66.0
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 2.6e-185 652.5 502 66.9
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 6.3e-184 647.9 512 66.6
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 6.3e-184 647.9 473 70.0
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 1.6e-182 643.3 467 71.3
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 3.5e-182 642.1 514 66.1
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 1.7e-181 639.8 488 67.8
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 2.9e-181 639.0 513 65.7
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 6.5e-181 637.9 497 66.6
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 1.1e-180 637.1 485 68.0
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 1.6e-179 633.3 500 66.0
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 1.4e-178 630.2 513 65.5
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 2.3e-178 629.4 492 65.2
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 5.7e-177 624.8 434 72.6
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 6.3e-176 621.3 496 65.3
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 6.3e-176 621.3 458 69.2
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 1.8e-175 619.8 497 66.2
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 2.9e-173 612.5 473 68.7
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 2.9e-173 612.5 468 67.7
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 8.5e-173 610.9 497 65.2
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 4.2e-172 608.6 466 66.3
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 7.2e-172 607.8 509 64.4
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 7.2e-172 607.8 500 66.0
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 9.4e-172 607.4 493 64.7
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 9.4e-172 607.4 466 66.3
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 2.1e-171 606.3 459 69.5
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 3.6e-171 605.5 465 68.0
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 8.0e-171 604.4 454 68.5
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 1.8e-170 603.2 442 71.0
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 1.8e-170 603.2 501 65.1
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 4.0e-170 602.1 519 60.7
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 4.0e-170 602.1 496 64.5
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 8.8e-170 600.9 443 67.7
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 1.7e-168 596.7 503 62.8
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 2.2e-168 596.3 471 66.0
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 2.8e-168 595.9 482 66.8
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 3.7e-168 595.5 458 67.7
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 8.3e-168 594.3 442 70.6
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 8.3e-168 594.3 442 68.8
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 1.1e-167 594.0 462 66.2
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.4e-167 593.6 552 59.4
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 3.1e-167 592.4 498 63.7
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 7.0e-167 591.3 471 65.6
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 3.5e-166 589.0 460 66.5
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 1.0e-165 587.4 518 61.4
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 5.0e-165 585.1 440 67.3
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 5.0e-165 585.1 492 64.6
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 5.0e-165 585.1 504 62.1
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.1e-164 583.9 495 61.8
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 1.1e-164 583.9 448 67.2
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 7.2e-164 581.3 494 63.4
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 3.6e-163 578.9 461 65.7
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 1.4e-162 577.0 495 62.8
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 2.3e-162 576.2 505 60.6
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 3.0e-162 575.9 495 62.6
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 1.2e-161 573.9 462 64.3
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.4e-159 567.0 435 68.0
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 1.2e-158 563.9 435 67.8
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 2.0e-158 563.1 475 64.6
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.7e-158 562.8 435 67.6
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 5.9e-158 561.6 500 61.0
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 5.9e-158 561.6 514 60.3
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.0e-157 560.8 433 67.2
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 5.0e-157 558.5 410 70.2
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 1.5e-156 557.0 396 71.7
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 2.1e-155 553.1 442 65.8
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.4e-154 550.4 484 62.2
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 1.2e-153 547.4 434 66.1
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 3.4e-153 545.8 403 70.0
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 3.7e-152 542.3 467 60.8
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 1.9e-151 540.0 445 62.5
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 3.9e-149 532.3 500 57.8
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 5.0e-149 531.9 497 59.2
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 4.3e-148 528.9 483 59.0
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 2.0e-145 520.0 471 59.9
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 7.0e-143 511.5 555 53.3
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 3.5e-142 509.2 360 71.1
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 6.6e-141 505.0 399 65.9
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.8e-138 496.9 424 60.8
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 3.1e-138 496.1 414 63.8
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 7.8e-134 481.5 335 73.1
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 3.9e-133 479.2 388 63.1
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 4.3e-132 475.7 352 67.3
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 4.9e-128 462.2 414 57.0
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 9.2e-127 458.0 464 57.3
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 1.3e-125 454.1 436 57.8
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 6.2e-123 445.3 350 65.4
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 1.9e-116 423.7 374 59.9
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 2.9e-112 409.8 306 67.0
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 9.6e-108 394.8 430 50.9
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 3.7e-107 392.9 401 53.9
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.4e-106 390.2 389 53.7
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 2.4e-106 390.2 341 59.2
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 4.6e-102 375.9 450 48.9
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 3.0e-101 373.2 457 47.5
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 2.1e-99 367.1 270 69.6
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 2.0e-97 360.5 302 64.2
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 2.3e-93 347.1 389 49.1
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 1.5e-89 334.3 270 65.9
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 8.8e-85 318.5 246 65.0
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 5.1e-77 292.7 355 47.6
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 8.2e-75 285.4 330 50.0
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 1.6e-62 244.6 473 37.0
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 4.2e-55 219.9 283 46.6
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 4.7e-54 216.5 435 33.1
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 3.0e-32 144.1 117 65.0
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 4.3e-31 140.2 139 57.6
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 4.0e-29 133.7 128 55.5
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 5.8e-28 129.8 187 44.4
BcaB03g15197 Brassica carinata HOM05D063035 ORTHO05D093409 2.4e-26 124.4 114 64.0
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.3e-24 117.9 175 40.6
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 8.9e-21 105.9 57 80.7
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 8.3e-19 99.4 199 34.7
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 4.1e-18 97.1 130 50.8
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.7e-16 91.7 91 51.6
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 7.3e-15 86.3 107 47.7
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 3.6e-14 84.0 68 57.4
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 6.8e-13 79.7 95 44.2
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 8.4e-11 72.8 264 26.1
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 1.4e-10 72.0 157 36.9
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 3.2e-10 70.9 53 64.2
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 3.3e-07 60.8 64 51.6
SMO197G0109 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 3.3e-07 60.8 140 33.6


User provided reference genes

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