Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR047670 Cardamine hirsuta HOM05D008820 ORTHO05D011139 0.0e+00 1308.9 681 100.0
Carub.0002s0118 Capsella rubella HOM05D008820 ORTHO05D011139 1.5e-308 1062.4 699 81.3
AL2G11560 Arabidopsis lyrata HOM05D008820 ORTHO05D011139 9.9e-305 1049.7 699 81.4
AT1G63670 Arabidopsis thaliana HOM05D008820 ORTHO05D011139 4.2e-303 1044.3 699 80.3
Thhalv10023318m.g Eutrema salsugineum HOM05D008820 ORTHO05D011139 1.8e-282 975.7 699 77.1
Sp2g00990 Schrenkiella parvula HOM05D008820 ORTHO05D011139 3.4e-281 971.5 700 77.4
A09p13800 Brassica napus HOM05D008820 ORTHO05D011139 1.3e-264 916.4 678 74.3
BraA09t37032Z Brassica rapa HOM05D008820 ORTHO05D011139 2.9e-264 915.2 680 74.9
BcaC04g22692 Brassica carinata HOM05D008820 ORTHO05D011139 2.2e-248 862.4 678 71.8
C09p16490 Brassica napus HOM05D008820 ORTHO05D011139 2.2e-248 862.4 678 71.8
BolC9t54559H Brassica oleracea HOM05D008820 ORTHO05D011139 4.7e-246 854.7 681 71.2
BcaB07g31557 Brassica carinata HOM05D008820 ORTHO05D011139 3.8e-240 835.1 677 70.2
C09p18650 Brassica napus HOM05D008820 ORTHO05D011139 5.8e-212 741.5 689 64.6
Aa31LG2G880 Aethionema arabicum HOM05D008820 ORTHO05D011139 3.7e-211 738.8 720 61.5
BolC9t54760H Brassica oleracea HOM05D008820 ORTHO05D011139 5.4e-210 734.9 689 64.4
BraA09t37180Z Brassica rapa HOM05D008820 ORTHO05D011139 6.6e-208 728.0 688 63.8
A09p15380 Brassica napus HOM05D008820 ORTHO05D011139 9.6e-207 724.2 688 63.5
BcaNung06083 Brassica carinata HOM05D008820 ORTHO05D011139 2.1e-201 706.4 689 62.6
THA.LOC104817974 Tarenaya hassleriana HOM05D008820 ORTHO05D011139 4.4e-151 539.3 782 46.4
THA.LOC104823587 Tarenaya hassleriana HOM05D008820 ORTHO05D011139 5.5e-138 495.7 744 46.9
C07p02790 Brassica napus HOM05D008820 ORTHO05D011139 1.9e-50 204.9 204 59.8
C01p12760 Brassica napus HOM05D008820 ORTHO05D011139 6.9e-48 196.4 142 68.3
BolC3t20944H Brassica oleracea HOM05D008820 ORTHO05D011139 6.9e-48 196.4 142 68.3
C02p20010 Brassica napus HOM05D008820 ORTHO05D011139 1.7e-46 191.8 147 65.3
BolC3t16052H Brassica oleracea HOM05D008820 ORTHO05D011139 2.2e-46 191.4 142 66.9
BcaB05g22617 Brassica carinata HOM05D008820 ORTHO05D011139 4.4e-34 150.6 148 57.4
Cpa.g.sc74.55 Carica papaya HOM05D002082 ORTHO05D002130 3.1e-32 144.4 934 24.8
COL.COLO4_34473 Corchorus olitorius HOM05D002082 ORTHO05D002130 9.1e-32 142.9 838 25.1
A07p03780 Brassica napus HOM05D008820 ORTHO05D011139 3.0e-27 127.9 135 57.0
BraA07t28170Z Brassica rapa HOM05D008820 ORTHO05D011139 3.0e-27 127.9 135 57.0
BraA07t28172Z Brassica rapa HOM05D008820 ORTHO05D011139 3.0e-27 127.9 135 57.0
BraA07t28167Z Brassica rapa HOM05D008820 ORTHO05D011139 1.2e-26 125.9 135 55.6
FAN08G0625 Fragaria x ananassa HOM05D002082 ORTHO05D002130 9.7e-26 122.9 864 25.1
Thecc.03G279700 Theobroma cacao HOM05D002082 ORTHO05D002130 2.8e-25 121.3 938 23.2
FvH4_5g02600 Fragaria vesca HOM05D002082 ORTHO05D002130 1.8e-24 118.6 855 25.0
FAN04G2070 Fragaria x ananassa HOM05D002082 ORTHO05D002130 2.4e-24 118.2 859 25.0
FAN13G1469 Fragaria x ananassa HOM05D002082 ORTHO05D002130 2.4e-24 118.2 867 24.8
Gohir.A08G183050 Gossypium hirsutum HOM05D002082 ORTHO05D011139 1.0e-22 112.8 683 22.3
FAN18G2062 Fragaria x ananassa HOM05D002082 ORTHO05D002130 2.9e-22 111.3 867 24.2
Gorai.004G212500 Gossypium raimondii HOM05D002082 ORTHO05D011139 5.0e-22 110.5 683 23.0
Gohir.D08G201600 Gossypium hirsutum HOM05D002082 ORTHO05D011139 4.7e-20 104.0 683 21.5
Manes.01G059400 Manihot esculenta HOM05D002082 ORTHO05D002130 1.0e-19 102.8 861 23.7
BolC1t01424H Brassica oleracea HOM05D008820 ORTHO05D011139 8.8e-19 99.8 117 47.9
RcHm_v2.0_Chr7g0197501 Rosa chinensis HOM05D002082 ORTHO05D002130 1.5e-18 99.0 883 23.2
Gorai.008G247100 Gossypium raimondii HOM05D002082 ORTHO05D002130 2.0e-18 98.6 924 23.2
Gohir.D12G230900 Gossypium hirsutum HOM05D002082 ORTHO05D002130 9.8e-18 96.3 920 22.6
Dinv43817 Davidia involucrata HOM05D002082 ORTHO05D002130 6.3e-17 93.6 267 29.2
Duzib205G1702 Durio zibethinus HOM05D002082 ORTHO05D002130 5.4e-16 90.5 296 29.4
GSVIVG01026934001 Vitis vinifera HOM05D002082 ORTHO05D002130 1.2e-15 89.4 862 24.4
Actinidia33420 Actinidia chinensis HOM05D002082 ORTHO05D002130 1.6e-15 89.0 261 30.7
DCAR_004631 Daucus carota HOM05D002082 ORTHO05D002130 1.6e-15 89.0 532 25.4
Atru.chr9.2180 Acer truncatum HOM05D002082 ORTHO05D002130 2.0e-15 88.6 338 30.2
QL12p032830 Quercus lobata HOM05D002082 ORTHO05D002130 2.0e-15 88.6 933 24.8
CSS0011549 Camellia sinensis var. sinensis HOM05D002082 ORTHO05D002130 2.7e-15 88.2 261 29.9
Duzib084G0248 Durio zibethinus HOM05D002082 ORTHO05D002130 3.5e-15 87.8 300 28.3
MD14G1105800 Malus domestica HOM05D002082 ORTHO05D002130 3.5e-15 87.8 257 28.4
TAR375G0315 Trochodendron aralioides HOM05D002082 ORTHO05D002130 5.9e-15 87.0 247 30.8
Potri.001G103400 Populus trichocarpa HOM05D002082 ORTHO05D002130 2.3e-14 85.1 889 23.5
Actinidia20902 Actinidia chinensis HOM05D002082 ORTHO05D002130 1.1e-13 82.8 289 26.0
MD06G1085000 Malus domestica HOM05D002082 ORTHO05D002130 1.1e-13 82.8 237 30.0
Actinidia10009 Actinidia chinensis HOM05D002082 ORTHO05D002130 1.5e-13 82.4 289 27.3
Actinidia12703 Actinidia chinensis HOM05D002082 ORTHO05D002130 2.5e-13 81.6 249 28.5
CSS0003251 Camellia sinensis var. sinensis HOM05D002082 ORTHO05D002130 4.2e-13 80.9 884 23.8
Thecc.04G199500 Theobroma cacao HOM05D002082 ORTHO05D002130 4.2e-13 80.9 267 29.2
vmacro20942 Vaccinium macrocarpon HOM05D002082 ORTHO05D002130 7.2e-13 80.1 838 22.1
Dinv32485 Davidia involucrata HOM05D002082 ORTHO05D002130 9.5e-13 79.7 242 28.9
Potri.014G084600 Populus trichocarpa HOM05D002082 ORTHO05D002130 1.2e-12 79.3 264 28.4
COL.COLO4_20185 Corchorus olitorius HOM05D002082 ORTHO05D002130 1.6e-12 79.0 279 28.7
Dinv37634 Davidia involucrata HOM05D002082 ORTHO05D002130 2.8e-12 78.2 274 27.0
TWI14G1346 Tripterygium wilfordii HOM05D002082 ORTHO05D002130 1.0e-11 76.3 232 26.7
Haze_15507 Corylus avellana HOM05D002082 ORTHO05D002130 1.4e-11 75.9 241 29.9
Sabra02G0127000 Salix brachista HOM05D002082 ORTHO05D002130 1.4e-11 75.9 298 26.8
Cfa003924 Carpinus fangiana HOM05D002082 ORTHO05D002130 1.8e-11 75.5 278 28.1
VMungo0331G0247 Vigna mungo HOM05D002082 ORTHO05D002130 1.8e-11 75.5 203 28.1
AUR62022567 Chenopodium quinoa HOM05D002082 ORTHO05D002130 2.3e-11 75.1 398 26.4
Manes.01G256600 Manihot esculenta HOM05D002082 ORTHO05D002130 2.3e-11 75.1 286 25.9
Lj7A512T28 Lonicera japonica HOM05D002082 ORTHO05D002130 4.0e-11 74.3 826 22.6
CiPaw.01G061400 Carya illinoinensis HOM05D002082 ORTHO05D002130 5.2e-11 73.9 287 25.1
Prupe.5G101000 Prunus persica HOM05D002082 ORTHO05D002130 6.8e-11 73.6 265 30.9
Manes.05G034100 Manihot esculenta HOM05D002082 ORTHO05D002130 8.9e-11 73.2 237 28.3
QL08p048793 Quercus lobata HOM05D002082 ORTHO05D002130 8.9e-11 73.2 278 25.2
arahy.Tifrunner.gnm1.ann1.Q9SV2L Arachis hypogaea HOM05D002082 ORTHO05D002130 2.6e-10 71.6 238 26.9
Eucgr.E00627 Eucalyptus grandis HOM05D002082 ORTHO05D002130 2.6e-10 71.6 155 30.3
MELO3C005681.2 Cucumis melo HOM05D002082 ORTHO05D002130 3.4e-10 71.2 170 29.4
MD01G1060800 Malus domestica HOM05D002082 ORTHO05D002130 3.4e-10 71.2 273 27.1
Potri.002G160000 Populus trichocarpa HOM05D002082 ORTHO05D002130 3.4e-10 71.2 304 27.3
CsaV3_5G002760 Cucumis sativus L. HOM05D002082 ORTHO05D002130 4.4e-10 70.9 170 29.4
arahy.Tifrunner.gnm1.ann1.H5386A Arachis hypogaea HOM05D002082 ORTHO05D002130 5.7e-10 70.5 269 26.0
BraA06t24331Z Brassica rapa HOM05D008820 ORTHO05D011139 5.7e-10 70.5 41 75.6
Ciclev10018878m.g Citrus clementina HOM05D002082 ORTHO05D002130 5.7e-10 70.5 719 21.3
DCAR_006930 Daucus carota HOM05D002082 ORTHO05D002130 5.7e-10 70.5 215 26.5
Lj9A583T65 Lonicera japonica HOM05D002082 ORTHO05D002130 5.7e-10 70.5 238 28.6
Atru.chr5.499 Acer truncatum HOM05D002082 ORTHO05D002130 7.5e-10 70.1 294 24.8
ClCG01G002640 Citrullus lanatus HOM05D002082 ORTHO05D002130 7.5e-10 70.1 170 27.1
Duzib068G0569 Durio zibethinus HOM05D002082 ORTHO05D002130 7.5e-10 70.1 310 26.5
Ciclev10018716m.g Citrus clementina HOM05D002082 ORTHO05D002130 9.8e-10 69.7 282 26.6
TAR629G0527 Trochodendron aralioides HOM05D002082 ORTHO05D002130 9.8e-10 69.7 296 28.7
CANSAT21G1957 Cannabis sativa HOM05D002082 ORTHO05D002130 1.7e-09 68.9 884 22.3
Eucgr.E00135 Eucalyptus grandis HOM05D002082 ORTHO05D002130 2.2e-09 68.6 214 29.9
Sabra01G0078100 Salix brachista HOM05D002082 ORTHO05D002130 2.2e-09 68.6 236 28.8
Glyma.18G233100 Glycine max HOM05D002082 ORTHO05D002130 2.8e-09 68.2 255 24.7
SGA_v2.0_scaffold479G52240 Striga asiatica HOM05D002082 ORTHO05D002130 2.8e-09 68.2 228 26.8
unitig_22.g5354 Utricularia gibba HOM05D002082 ORTHO05D002130 2.8e-09 68.2 246 27.6
CiPaw.02G031000 Carya illinoinensis HOM05D002082 ORTHO05D002130 3.7e-09 67.8 292 25.0
Oeu009151.1 Olea europaea HOM05D002082 ORTHO05D002130 3.7e-09 67.8 232 28.0
Phvul.010G099200 Phaseolus vulgaris HOM05D002082 ORTHO05D002130 3.7e-09 67.8 205 26.8
Sed0022826 Sechium edule HOM05D002082 ORTHO05D002130 3.7e-09 67.8 695 20.7
Solyc01g094640.4 Solanum lycopersicum HOM05D002082 ORTHO05D002130 3.7e-09 67.8 239 25.9
Sopen01g038450 Solanum pennellii HOM05D002082 ORTHO05D002130 3.7e-09 67.8 239 25.9
Ah.05g180600 Amaranthus hybridus HOM05D002082 ORTHO05D002130 4.9e-09 67.4 315 25.1
Duzib268G0073 Durio zibethinus HOM05D002082 ORTHO05D002130 6.3e-09 67.0 290 27.2
EL10Ac1g00415 Beta vulgaris HOM05D002082 ORTHO05D002130 8.3e-09 66.6 242 27.3
AUR62004359 Chenopodium quinoa HOM05D002082 ORTHO05D002130 1.1e-08 66.2 400 24.2
CANSAT56G4299 Cannabis sativa HOM05D002082 ORTHO05D002130 1.4e-08 65.9 309 29.8
TAR636G0944 Trochodendron aralioides HOM05D002082 ORTHO05D002130 1.4e-08 65.9 253 26.5
Hund16922 Selenicereus undatus HOM05D002082 ORTHO05D002130 1.8e-08 65.5 216 28.2
Actinidia33419 Actinidia chinensis HOM05D002082 ORTHO05D002130 2.4e-08 65.1 248 27.8
MBI17_g24689_MAGBIO Magnolia biondii HOM05D002082 ORTHO05D002130 2.4e-08 65.1 227 27.8
MD07G1136900 Malus domestica HOM05D002082 ORTHO05D002130 3.1e-08 64.7 273 26.7
RcHm_v2.0_Chr1g0355281 Rosa chinensis HOM05D002082 ORTHO05D002130 3.1e-08 64.7 222 27.9
PGSC0003DMG400000172 Solanum tuberosum HOM05D002082 ORTHO05D002130 3.1e-08 64.7 246 24.4
PSO478G2816 Papaver somniferum HOM05D002082 ORTHO05D002130 4.1e-08 64.3 249 29.7
Oeu011042.2 Olea europaea HOM05D002082 ORTHO05D002130 5.4e-08 63.9 262 26.7
Gorai.005G030500 Gossypium raimondii HOM05D002082 ORTHO05D002130 7.0e-08 63.5 287 27.9
Lalb_Chr04g0256961 Lupinus albus HOM05D002082 ORTHO05D002130 7.0e-08 63.5 275 26.2
Lalb_Chr17g0339601 Lupinus albus HOM05D002082 ORTHO05D002130 9.2e-08 63.2 215 32.6
SGA_v2.0_scaffold173G39174 Striga asiatica HOM05D002082 ORTHO05D002130 9.2e-08 63.2 278 27.3
arahy.Tifrunner.gnm1.ann1.XE9T79 Arachis hypogaea HOM05D002082 ORTHO05D002130 1.2e-07 62.8 238 27.7
SGA_v2.0_scaffold95G28833 Striga asiatica HOM05D002082 ORTHO05D002130 1.2e-07 62.8 296 26.4
arahy.Tifrunner.gnm1.ann1.7UV203 Arachis hypogaea HOM05D002082 ORTHO05D002130 1.6e-07 62.4 235 26.8
HanXRQChr06g0170011 Helianthus annuus HOM05D002082 ORTHO05D002130 1.6e-07 62.4 747 21.6
Manes.06G173066 Manihot esculenta HOM05D002082 ORTHO05D002130 1.6e-07 62.4 237 26.6
PGR042G2129 Punica granatum HOM05D002082 ORTHO05D002130 1.6e-07 62.4 747 23.4
DCAR_000349 Daucus carota HOM05D002082 ORTHO05D045079 2.0e-07 62.0 533 23.8
DCAR_008398 Daucus carota HOM05D002082 ORTHO05D045079 2.0e-07 62.0 533 23.8
FvH4_7g14290 Fragaria vesca HOM05D002082 ORTHO05D002130 2.0e-07 62.0 219 28.8
Glyma.09G259200 Glycine max HOM05D002082 ORTHO05D002130 2.7e-07 61.6 222 27.0
Gohir.D02G024600 Gossypium hirsutum HOM05D002082 ORTHO05D002130 2.7e-07 61.6 287 27.5
HanXRQChr02g0034491 Helianthus annuus HOM05D002082 ORTHO05D002130 2.7e-07 61.6 244 25.4
Gohir.A12G229800 Gossypium hirsutum HOM05D002082 ORTHO05D002130 3.5e-07 61.2 870 22.2
Nn6g33418 Nelumbo nucifera HOM05D002082 ORTHO05D002130 3.5e-07 61.2 278 27.7
PSO782G2744 Papaver somniferum HOM05D002082 ORTHO05D002130 3.5e-07 61.2 250 28.4
BolC1t01253H Brassica oleracea HOM05D008820 ORTHO05D011139 4.5e-07 60.8 117 43.6
Cpa.g.sc11.5 Carica papaya HOM05D002082 ORTHO05D002130 4.5e-07 60.8 415 24.1
FAN06G2330 Fragaria x ananassa HOM05D002082 ORTHO05D002130 4.5e-07 60.8 219 28.3
Gohir.A02G020600 Gossypium hirsutum HOM05D002082 ORTHO05D002130 4.5e-07 60.8 284 25.7
Manes.02G019700 Manihot esculenta HOM05D002082 ORTHO05D002130 4.5e-07 60.8 270 27.0
Manes.05G044766 Manihot esculenta HOM05D002082 ORTHO05D002130 4.5e-07 60.8 306 23.9
Gohir.A03G095500 Gossypium hirsutum HOM05D002082 ORTHO05D002130 5.9e-07 60.5 234 26.9
ATR0680G229 Amborella trichopoda HOM05D002082 ORTHO05D002130 7.8e-07 60.1 232 25.9
Ca_23632_v3 Cicer arietinum L. HOM05D002082 ORTHO05D002130 7.8e-07 60.1 276 25.7
FAN06G4139 Fragaria x ananassa HOM05D002082 ORTHO05D002130 7.8e-07 60.1 219 28.3
FAN10G2557 Fragaria x ananassa HOM05D002082 ORTHO05D002130 7.8e-07 60.1 219 26.5
FAN10G2676 Fragaria x ananassa HOM05D002082 ORTHO05D002130 7.8e-07 60.1 219 26.5
Glyma.03G009000 Glycine max HOM05D002082 ORTHO05D002130 1.0e-06 59.7 271 25.5
SGA_v2.0_scaffold144G35940 Striga asiatica HOM05D002082 ORTHO05D002130 1.0e-06 59.7 295 24.4
Gohir.D02G113800 Gossypium hirsutum HOM05D002082 ORTHO05D002130 1.3e-06 59.3 289 25.6
FAN03G3385 Fragaria x ananassa HOM05D002082 ORTHO05D002130 1.7e-06 58.9 219 26.5
C03p60290 Brassica napus HOM05D008820 ORTHO05D021986 2.3e-06 58.5 36 75.0
BolC3t18291H Brassica oleracea HOM05D008820 ORTHO05D021986 2.3e-06 58.5 36 75.0
Haze_08787 Corylus avellana HOM05D002082 ORTHO05D002130 2.3e-06 58.5 219 27.4
Glyma.07G070500 Glycine max HOM05D002082 ORTHO05D002130 5.0e-06 57.4 297 26.3
Medtr8g098335 Medicago truncatula HOM05D002082 ORTHO05D002130 5.0e-06 57.4 503 22.3
Aqoxy7G00305 Aquilegia oxysepala HOM05D002082 ORTHO05D002130 8.6e-06 56.6 229 24.0
C04p71920 Brassica napus HOM05D002082 ORTHO05D002130 8.6e-06 56.6 276 26.4
Eucgr.D02291 Eucalyptus grandis HOM05D002082 ORTHO05D002130 8.6e-06 56.6 269 23.8
Sc23g0002890 Simmondsia chinensis HOM05D002082 ORTHO05D002130 8.6e-06 56.6 65 40.0


User provided reference genes

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