Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR040780 Cardamine hirsuta HOM05D008885 ORTHO05D006152 1.6e-82 309.3 152 100.0
CARHR040800 Cardamine hirsuta HOM05D008885 ORTHO05D006152 3.9e-60 235.0 148 79.7
AL1G58370 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 1.7e-39 166.4 163 56.4
AT1G50690 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 2.5e-38 162.5 164 56.1
Sp6g37770 Schrenkiella parvula HOM05D008885 ORTHO05D006152 5.7e-19 98.2 126 39.7
AT5G05060 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 8.3e-18 94.4 152 36.8
A07p12710 Brassica napus HOM05D008885 ORTHO05D006152 3.1e-17 92.4 126 40.5
BraA07t29049Z Brassica rapa HOM05D008885 ORTHO05D006152 7.0e-17 91.3 126 39.7
AT5G05040 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 3.5e-16 89.0 152 34.9
AL5G33880 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 5.9e-16 88.2 145 34.5
BcaB05g21736 Brassica carinata HOM05D008885 ORTHO05D006152 1.7e-15 86.7 144 32.6
BcaB05g21731 Brassica carinata HOM05D008885 ORTHO05D006152 1.9e-14 83.2 122 35.2
BraA02t04832Z Brassica rapa HOM05D008885 ORTHO05D006152 7.3e-14 81.3 148 32.4
Carub.0006s0398 Capsella rubella HOM05D008885 ORTHO05D006152 2.1e-13 79.7 144 29.9
AL2G12260 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 2.8e-13 79.3 109 37.6
Thhalv10015607m.g Eutrema salsugineum HOM05D008885 ORTHO05D006152 1.0e-12 77.4 148 31.8
AL6G14830 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 3.0e-12 75.9 135 31.1
Carub.0002s0168 Capsella rubella HOM05D007210 ORTHO05D006152 1.2e-11 73.9 146 32.9
Thhalv10015529m.g Eutrema salsugineum HOM05D008885 ORTHO05D006152 1.2e-11 73.9 145 34.5
Carub.0006s0396 Capsella rubella HOM05D008885 ORTHO05D006152 1.5e-11 73.6 139 33.1
Carub.0002s0167 Capsella rubella HOM05D007210 ORTHO05D006152 4.4e-11 72.0 130 32.3
CARHR208050 Cardamine hirsuta HOM05D008885 ORTHO05D006152 7.5e-11 71.2 144 32.6
A09p15630 Brassica napus HOM05D007210 ORTHO05D006152 2.2e-10 69.7 107 32.7
BraA09t37203Z Brassica rapa HOM05D007210 ORTHO05D006152 2.2e-10 69.7 107 32.7
Sp2g01360 Schrenkiella parvula HOM05D007210 ORTHO05D006152 2.9e-10 69.3 142 32.4
A09p13520 Brassica napus HOM05D007210 ORTHO05D006152 6.4e-10 68.2 143 32.9
BraA09t37003Z Brassica rapa HOM05D007210 ORTHO05D006152 6.4e-10 68.2 143 32.9
Thhalv10023855m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 8.3e-10 67.8 109 33.9
CARHR208210 Cardamine hirsuta HOM05D008885 ORTHO05D006152 1.1e-09 67.4 158 29.7
A05p10190 Brassica napus HOM05D007210 ORTHO05D006152 1.4e-09 67.0 106 36.8
BcaB07g31387 Brassica carinata HOM05D007210 ORTHO05D006152 1.8e-09 66.6 106 32.1
C03p93270 Brassica napus HOM05D007210 ORTHO05D006152 1.8e-09 66.6 143 31.5
BolC3t21625H Brassica oleracea HOM05D007210 ORTHO05D006152 1.8e-09 66.6 143 31.5
BraA05t19960Z Brassica rapa HOM05D007210 ORTHO05D006152 1.8e-09 66.6 106 36.8
AL4G33850 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 4.1e-09 65.5 121 29.8
BcaB05g21589 Brassica carinata HOM05D008885 ORTHO05D006152 5.4e-09 65.1 114 29.8
Carub.0002s0173 Capsella rubella HOM05D007210 ORTHO05D006152 5.4e-09 65.1 92 37.0
AL2G12250 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 7.0e-09 64.7 132 29.5
BcaC07g41054 Brassica carinata HOM05D007210 ORTHO05D006152 7.0e-09 64.7 109 31.2
BraA08t32080Z Brassica rapa HOM05D007210 ORTHO05D006152 9.2e-09 64.3 143 31.5
Sp2g04770 Schrenkiella parvula HOM05D007210 ORTHO05D006152 2.0e-08 63.2 84 41.7
BcaC05g24442 Brassica carinata HOM05D007210 ORTHO05D006152 2.7e-08 62.8 110 30.9
AL2G12230 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 4.6e-08 62.0 106 33.0
BcaB01g02146 Brassica carinata HOM05D007210 ORTHO05D006152 5.9e-08 61.6 113 31.0
BolC5t29096H Brassica oleracea HOM05D007210 ORTHO05D006152 5.9e-08 61.6 96 35.4
AT1G63190 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 7.8e-08 61.2 147 28.6
BcaC02g10394 Brassica carinata HOM05D007210 ORTHO05D006152 1.3e-07 60.5 117 29.9
A10p03420 Brassica napus HOM05D007210 ORTHO05D006152 1.3e-07 60.5 114 30.7
BraA10t42618Z Brassica rapa HOM05D007210 ORTHO05D006152 1.3e-07 60.5 114 30.7
Carub.0002s0166 Capsella rubella HOM05D007210 ORTHO05D006152 1.7e-07 60.1 150 28.0
AL2G12220 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 3.0e-07 59.3 106 32.1
AT1G63205 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 3.0e-07 59.3 133 29.3
A08p00230 Brassica napus HOM05D007210 ORTHO05D006152 3.0e-07 59.3 84 40.5
C05p03140 Brassica napus HOM05D007210 ORTHO05D006152 3.0e-07 59.3 127 29.9
BcaNung06875 Brassica carinata HOM05D007210 ORTHO05D006152 3.9e-07 58.9 117 32.5
AL2G12320 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.1e-06 57.4 131 29.8
CSS0006348 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 1.5e-06 57.0 139 30.9
Dinv04048 Davidia involucrata HOM05D000041 ORTHO05D019419 1.5e-06 57.0 86 40.7
AL2G12300 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 2.5e-06 56.2 148 29.1
CSS0008468 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 2.5e-06 56.2 94 39.4
CSS0013123 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 2.5e-06 56.2 134 33.6
CARHR048270 Cardamine hirsuta HOM05D007210 ORTHO05D006152 3.3e-06 55.8 81 37.0
Dinv41577 Davidia involucrata HOM05D008623 ORTHO05D007789 3.3e-06 55.8 87 40.2
AL2G12280 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 4.3e-06 55.5 107 29.9
CSS0005018 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 4.3e-06 55.5 119 31.1
CSS0008827 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 4.3e-06 55.5 139 30.9
CSS0032446 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 4.3e-06 55.5 134 33.6
Carub.0002s0169 Capsella rubella HOM05D007210 ORTHO05D006152 5.6e-06 55.1 101 29.7
Carub.0002s0171 Capsella rubella HOM05D007210 ORTHO05D006152 5.6e-06 55.1 108 30.6
CSS0008461 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 7.3e-06 54.7 111 32.4
Dinv41634 Davidia involucrata HOM05D008623 ORTHO05D007789 7.3e-06 54.7 79 38.0
AT1G63206 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 9.5e-06 54.3 109 32.1
CSS0009631 Camellia sinensis var. sinensis HOM05D008623 ORTHO05D007789 9.5e-06 54.3 67 46.3


User provided reference genes

Program Settings