Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR039830 Cardamine hirsuta HOM05D003014 ORTHO05D003233 1.7e-48 195.7 100 100.0
CARHR039820 Cardamine hirsuta HOM05D003014 ORTHO05D003233 6.8e-37 157.1 83 94.0
BcaC08g43150 Brassica carinata HOM05D003014 ORTHO05D003233 9.0e-21 103.6 101 62.4
C06p04340 Brassica napus HOM05D003014 ORTHO05D003233 9.0e-21 103.6 101 62.4
BcaB07g33661 Brassica carinata HOM05D003014 ORTHO05D003233 1.2e-20 103.2 88 67.0
BolC6t35563H Brassica oleracea HOM05D003014 ORTHO05D003233 3.4e-20 101.7 88 67.0
Thhalv10012185m.g Eutrema salsugineum HOM05D003014 ORTHO05D003233 2.2e-19 99.0 87 63.2
A06p03770 Brassica napus HOM05D003014 ORTHO05D003233 3.8e-19 98.2 88 67.0
BraA06t23582Z Brassica rapa HOM05D003014 ORTHO05D003233 3.8e-19 98.2 88 67.0
Carub.0001s3897 Capsella rubella HOM05D003014 ORTHO05D003233 4.9e-19 97.8 89 64.0
BcaC05g27473 Brassica carinata HOM05D003014 ORTHO05D003233 2.4e-18 95.5 87 60.9
C05p34380 Brassica napus HOM05D003014 ORTHO05D003233 2.4e-18 95.5 87 60.9
BolC5t32166H Brassica oleracea HOM05D003014 ORTHO05D003233 2.4e-18 95.5 87 60.9
BraA05t20958Z Brassica rapa HOM05D003014 ORTHO05D003233 2.4e-18 95.5 87 60.9
BcaB02g11106 Brassica carinata HOM05D003014 ORTHO05D003233 4.2e-18 94.7 87 60.9
A05p20490 Brassica napus HOM05D003014 ORTHO05D003233 4.6e-17 91.3 87 59.8
Sp1g36660 Schrenkiella parvula HOM05D003014 ORTHO05D003233 1.1e-15 86.7 88 58.0
AL1G57220 Arabidopsis lyrata HOM05D003014 ORTHO05D003233 6.5e-11 70.9 86 52.3
GSVIVG01009469001 Vitis vinifera HOM05D003014 ORTHO05D003233 6.5e-11 70.9 90 43.3
Dinv42167 Davidia involucrata HOM05D003014 ORTHO05D003233 1.1e-10 70.1 93 48.4
AT1G49770 Arabidopsis thaliana HOM05D003014 ORTHO05D003233 9.3e-10 67.0 86 50.0
Nn1g04801 Nelumbo nucifera HOM05D003014 ORTHO05D003233 1.2e-09 66.6 90 48.9
THA.LOC104806046 Tarenaya hassleriana HOM05D003014 ORTHO05D003233 1.2e-09 66.6 47 72.3
Dinv15730 Davidia involucrata HOM05D003014 ORTHO05D003233 2.1e-09 65.9 95 46.3
Sabra16G0191500 Salix brachista HOM05D000187 ORTHO05D000230 2.7e-09 65.5 85 48.2
EL10Ac9g21584 Beta vulgaris HOM05D003014 ORTHO05D003233 3.5e-09 65.1 36 77.8
MBI17_g08637_MAGBIO Magnolia biondii HOM05D003014 ORTHO05D003233 3.5e-09 65.1 98 42.9
Gohir.D01G110400 Gossypium hirsutum HOM05D003014 ORTHO05D003233 6.0e-09 64.3 70 50.0
Gorai.002G135000 Gossypium raimondii HOM05D003014 ORTHO05D003233 6.0e-09 64.3 70 50.0
Gohir.A01G122633 Gossypium hirsutum HOM05D003014 ORTHO05D003233 7.9e-09 63.9 51 62.7
Gohir.A01G122666 Gossypium hirsutum HOM05D003014 ORTHO05D003233 7.9e-09 63.9 51 62.7
Sc08g0001710 Simmondsia chinensis HOM05D003014 ORTHO05D003233 1.3e-08 63.2 48 62.5
arahy.Tifrunner.gnm1.ann1.U584NJ Arachis hypogaea HOM05D003014 ORTHO05D003233 1.8e-08 62.8 59 54.2
arahy.Tifrunner.gnm1.ann1.DD1GZC Arachis hypogaea HOM05D003014 ORTHO05D003233 2.3e-08 62.4 60 53.3
COL.COLO4_32636 Corchorus olitorius HOM05D003014 ORTHO05D003233 2.3e-08 62.4 36 77.8
Hma1.2p1_0370F.1_g137650 Hydrangea macrophylla HOM05D003014 ORTHO05D003233 2.3e-08 62.4 36 77.8
unitig_0.g90 Utricularia gibba HOM05D003014 ORTHO05D003233 2.3e-08 62.4 58 56.9
Duzib132G1208 Durio zibethinus HOM05D003014 ORTHO05D003233 3.0e-08 62.0 35 80.0
Peaxi162Scf00152g00131 Petunia axillaris HOM05D003014 ORTHO05D003233 3.9e-08 61.6 60 55.0
Sed0010940 Sechium edule HOM05D003014 ORTHO05D003233 3.9e-08 61.6 71 49.3
ClCG02G005950 Citrullus lanatus HOM05D003014 ORTHO05D003233 5.1e-08 61.2 51 60.8
Ciclev10030106m.g Citrus clementina HOM05D003014 ORTHO05D003233 5.1e-08 61.2 94 42.6
CsaV3_7G008580 Cucumis sativus L. HOM05D003014 ORTHO05D003233 5.1e-08 61.2 52 61.5
Nitab4.5_0007431g0020 Nicotiana tabacum HOM05D003014 ORTHO05D003233 5.1e-08 61.2 37 75.7
Prupe.8G127700 Prunus persica HOM05D003014 ORTHO05D003233 5.1e-08 61.2 119 36.1
PGR042G3868 Punica granatum HOM05D003014 ORTHO05D003233 5.1e-08 61.2 110 37.3
vmacro02036 Vaccinium macrocarpon HOM05D003014 ORTHO05D003233 5.1e-08 61.2 33 81.8
Actinidia12937 Actinidia chinensis HOM05D003014 ORTHO05D003233 6.7e-08 60.8 33 81.8
Lj9C355T10 Lonicera japonica HOM05D003014 ORTHO05D003233 6.7e-08 60.8 33 81.8
Lj9C357T7 Lonicera japonica HOM05D003014 ORTHO05D003233 6.7e-08 60.8 33 81.8
Sed0005157 Sechium edule HOM05D003014 ORTHO05D003233 6.7e-08 60.8 48 66.7
TAR381G0350 Trochodendron aralioides HOM05D003014 ORTHO05D003233 6.7e-08 60.8 103 39.8
MELO3C018451.2 Cucumis melo HOM05D003014 ORTHO05D003233 8.7e-08 60.5 53 60.4
Nitab4.5_0000292g0060 Nicotiana tabacum HOM05D003014 ORTHO05D003233 8.7e-08 60.5 105 41.0
Manes.10G080300 Manihot esculenta HOM05D003014 ORTHO05D003233 1.5e-07 59.7 33 78.8
Nitab4.5_0001428g0060 Nicotiana tabacum HOM05D003014 ORTHO05D003233 1.5e-07 59.7 98 44.9
QL11p034987 Quercus lobata HOM05D003014 ORTHO05D003233 1.5e-07 59.7 50 58.0
Thecc.02G102900 Theobroma cacao HOM05D003014 ORTHO05D003233 1.5e-07 59.7 33 78.8
Potri.014G025900 Populus trichocarpa HOM05D003014 ORTHO05D003233 1.9e-07 59.3 78 43.6
Sabra14G0017800 Salix brachista HOM05D003014 ORTHO05D003233 1.9e-07 59.3 62 50.0
CiPaw.06G171700 Carya illinoinensis HOM05D003014 ORTHO05D003233 3.3e-07 58.5 33 75.8
Nitab4.5_0001230g0010 Nicotiana tabacum HOM05D003014 ORTHO05D003233 3.3e-07 58.5 100 42.0
Cc02_g18940 Coffea canephora HOM05D003014 ORTHO05D003233 4.3e-07 58.2 33 78.8
Migut.N01183 Erythranthe guttata HOM05D003014 ORTHO05D003233 4.3e-07 58.2 33 72.7
Eucgr.G01493 Eucalyptus grandis HOM05D003014 ORTHO05D003233 4.3e-07 58.2 33 75.8
SMO270G0033 Selaginella moellendorffii HOM05D003014 ORTHO05D003233 4.3e-07 58.2 80 41.2
SGA_v2.0_scaffold393G50697 Striga asiatica HOM05D003014 ORTHO05D003233 4.3e-07 58.2 51 54.9
CSS0015958 Camellia sinensis var. sinensis HOM05D003014 ORTHO05D003233 5.7e-07 57.8 49 59.2
CDE02G2363 Ceratophyllum demersum HOM05D003014 ORTHO05D003233 5.7e-07 57.8 51 56.9
COL.COLO4_26545 Corchorus olitorius HOM05D003014 ORTHO05D003233 5.7e-07 57.8 36 72.2
PSO170G5216 Papaver somniferum HOM05D003014 ORTHO05D003233 5.7e-07 57.8 33 78.8
PSO210G4688 Papaver somniferum HOM05D003014 ORTHO05D003233 5.7e-07 57.8 33 78.8
Phvul.003G048000 Phaseolus vulgaris HOM05D003014 ORTHO05D003233 5.7e-07 57.8 57 52.6
Sabra09G0076200 Salix brachista HOM05D003014 ORTHO05D003233 5.7e-07 57.8 44 63.6
TWI36G1467 Tripterygium wilfordii HOM05D003014 ORTHO05D003233 5.7e-07 57.8 62 50.0
ATR0584G279 Amborella trichopoda HOM05D003014 ORTHO05D003233 7.4e-07 57.4 41 70.7
Gohir.A03G188350 Gossypium hirsutum HOM05D003014 ORTHO05D003233 7.4e-07 57.4 33 75.8
Gohir.D02G209050 Gossypium hirsutum HOM05D003014 ORTHO05D003233 7.4e-07 57.4 33 75.8
GSVIVG01031718001 Vitis vinifera HOM05D003014 ORTHO05D003233 7.4e-07 57.4 103 37.9
CSS0044289 Camellia sinensis var. sinensis HOM05D003014 ORTHO05D003233 9.6e-07 57.0 82 43.9
Lsat_1_v5_gn_9_110961 Lactuca sativa HOM05D003014 ORTHO05D003233 9.6e-07 57.0 98 36.7
Rhsim11G0164600 Rhododendron simsii HOM05D003014 ORTHO05D003233 9.6e-07 57.0 104 41.3
CSS0020374 Camellia sinensis var. sinensis HOM05D003014 ORTHO05D003233 1.3e-06 56.6 41 65.9
CANSAT25G0518 Cannabis sativa HOM05D003014 ORTHO05D003233 1.3e-06 56.6 33 75.8
Cfa004537 Carpinus fangiana HOM05D003014 ORTHO05D003233 1.3e-06 56.6 33 75.8
Thecc.08G003900 Theobroma cacao HOM05D003014 ORTHO05D003233 1.3e-06 56.6 69 49.3
TWI56G0629 Tripterygium wilfordii HOM05D003014 ORTHO05D003233 1.3e-06 56.6 62 50.0
Ca_18705_v3 Cicer arietinum L. HOM05D003014 ORTHO05D003233 1.6e-06 56.2 63 54.0
Gohir.A13G041500 Gossypium hirsutum HOM05D003014 ORTHO05D003233 1.6e-06 56.2 41 65.9
Gohir.D13G040200 Gossypium hirsutum HOM05D003014 ORTHO05D003233 1.6e-06 56.2 41 65.9
Gorai.013G045100 Gossypium raimondii HOM05D003014 ORTHO05D003233 1.6e-06 56.2 41 65.9
MD05G1083300 Malus domestica HOM05D003014 ORTHO05D003233 1.6e-06 56.2 58 53.4
Peaxi162Scf00016g02026 Petunia axillaris HOM05D003014 ORTHO05D003233 1.6e-06 56.2 37 73.0
Potri.001G305100 Populus trichocarpa HOM05D003014 ORTHO05D003233 1.6e-06 56.2 98 41.8
Mapoly0126s0029 Marchantia polymorpha HOM05D003014 ORTHO05D003233 2.1e-06 55.8 74 45.9
TAR376G0856 Trochodendron aralioides HOM05D003014 ORTHO05D003233 2.1e-06 55.8 63 47.6
ECA240G1347 Erigeron canadensis HOM05D003014 ORTHO05D003233 2.8e-06 55.5 82 40.2
Os04g0429400 Oryza sativa ssp. japonica HOM05D003014 ORTHO05D003233 2.8e-06 55.5 33 72.7
FvH4_2g05810 Fragaria vesca HOM05D003014 ORTHO05D003233 3.7e-06 55.1 46 60.9
FAN24G2463 Fragaria x ananassa HOM05D003014 ORTHO05D003233 3.7e-06 55.1 46 60.9
Glyma.02G103200 Glycine max HOM05D003014 ORTHO05D003233 3.7e-06 55.1 89 39.3
HanXRQChr03g0074841 Helianthus annuus HOM05D003014 ORTHO05D003233 3.7e-06 55.1 34 70.6
MD15G1079900 Malus domestica HOM05D003014 ORTHO05D003233 3.7e-06 55.1 53 52.8
VMungo0251G3056 Vigna mungo HOM05D003014 ORTHO05D003233 3.7e-06 55.1 33 72.7
CSS0023387 Camellia sinensis var. sinensis HOM05D003014 ORTHO05D003233 4.8e-06 54.7 100 39.0
FAN20G1742 Fragaria x ananassa HOM05D003014 ORTHO05D003233 4.8e-06 54.7 46 58.7
Prupe.1G432900 Prunus persica HOM05D003014 ORTHO05D003233 4.8e-06 54.7 61 49.2
FAN15G1137 Fragaria x ananassa HOM05D003014 ORTHO05D003233 8.2e-06 53.9 46 58.7
Oeu001777.1 Olea europaea HOM05D003014 ORTHO05D003233 8.2e-06 53.9 59 50.8
Oeu013724.1 Olea europaea HOM05D003014 ORTHO05D003233 8.2e-06 53.9 33 75.8
SalBow6G1753 Salvia bowleyana HOM05D003014 ORTHO05D003233 8.2e-06 53.9 49 61.2
PGSC0003DMG400025780 Solanum tuberosum HOM05D003014 ORTHO05D003233 8.2e-06 53.9 102 39.2


User provided reference genes

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