Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR033580 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.3e-91 339.7 174 100.0
CARHR100280 Cardamine hirsuta HOM05D002743 ORTHO05D002895 3.2e-50 202.2 190 59.5
CARHR033610 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.0e-48 197.2 192 58.9
AL3G39550 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.2e-46 189.5 190 55.8
CARHR100270 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.8e-45 186.4 153 66.7
Carub.0003s2455 Capsella rubella HOM05D002743 ORTHO05D002895 1.3e-43 180.3 193 54.4
Sp3g21990 Schrenkiella parvula HOM05D002743 ORTHO05D002895 2.2e-43 179.5 195 51.8
BcaB06g26601 Brassica carinata HOM05D002743 ORTHO05D002895 3.8e-43 178.7 195 50.8
AT3G23970 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 5.0e-43 178.3 193 53.4
AL3G39540 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 6.5e-43 177.9 193 52.8
AT3G23950 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.1e-42 177.2 193 50.8
BcaC06g35666 Brassica carinata HOM05D002743 ORTHO05D002895 1.5e-42 176.8 195 51.3
BolC7t41698H Brassica oleracea HOM05D002743 ORTHO05D002895 1.5e-42 176.8 195 51.3
A07p08150 Brassica napus HOM05D002743 ORTHO05D002895 2.5e-42 176.0 195 50.8
BraA07t28599Z Brassica rapa HOM05D002743 ORTHO05D002895 2.5e-42 176.0 195 50.8
C07p12300 Brassica napus HOM05D002743 ORTHO05D002895 4.2e-42 175.3 195 50.8
AL3G39570 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.7e-41 172.6 188 52.7
CARHR288610 Cardamine hirsuta HOM05D002743 ORTHO05D002895 8.0e-41 171.0 135 68.1
Aa31sc58G40 Aethionema arabicum HOM05D002743 ORTHO05D002895 1.6e-33 146.7 194 43.8
Thhalv10029227m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.3e-32 142.9 190 45.8
AL6G47130 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.7e-30 135.6 193 40.9
AL6G43490 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.4e-29 132.9 194 40.7
Carub.0006s3248 Capsella rubella HOM05D002743 ORTHO05D002895 5.2e-24 115.2 181 42.0
Thhalv10024137m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 6.8e-24 114.8 191 38.7
Aa31sc58G10 Aethionema arabicum HOM05D002743 ORTHO05D002895 2.6e-23 112.8 199 38.2
THA.LOC104805970 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 1.6e-20 103.6 204 36.8
AL6G48200 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 5.9e-20 101.7 182 37.9
BolC3t20638H Brassica oleracea HOM05D002743 ORTHO05D002895 2.5e-18 96.3 182 34.1
C03p83580 Brassica napus HOM05D002743 ORTHO05D002895 3.3e-18 95.9 182 34.1
C03p83640 Brassica napus HOM05D002743 ORTHO05D002895 9.5e-18 94.4 158 36.7
AT1G15680 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.4e-16 90.5 186 34.4
BolC1t01435H Brassica oleracea HOM05D002743 ORTHO05D002895 1.8e-16 90.1 182 34.6
BraA01t01181Z Brassica rapa HOM05D002743 ORTHO05D002895 2.3e-16 89.7 182 35.7
A01p12360 Brassica napus HOM05D002743 ORTHO05D002895 3.0e-16 89.4 182 35.7
A10p18240 Brassica napus HOM05D002743 ORTHO05D002895 8.9e-16 87.8 188 35.1
BcaB08g36563 Brassica carinata HOM05D002743 ORTHO05D002895 1.2e-15 87.4 180 34.4
Carub.0007s1889 Capsella rubella HOM05D002743 ORTHO05D002895 1.2e-15 87.4 160 34.4
BraA10t43899Z Brassica rapa HOM05D002743 ORTHO05D002895 2.6e-15 86.3 188 34.6
AL1G67480 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.4e-15 85.5 182 33.0
C03p83600 Brassica napus HOM05D002743 ORTHO05D002895 4.4e-15 85.5 127 37.8
BNapus_Darmor_BZH_scaffold_38p02040 Brassica napus HOM05D002743 ORTHO05D002895 5.8e-15 85.1 156 32.7
BolC2t06988H Brassica oleracea HOM05D002743 ORTHO05D002895 5.8e-15 85.1 156 32.7
A02p05860 Brassica napus HOM05D002743 ORTHO05D002895 1.3e-14 84.0 156 34.0
BraA02t05538Z Brassica rapa HOM05D002743 ORTHO05D002895 1.3e-14 84.0 156 34.0
Carub.0006s2838 Capsella rubella HOM05D002743 ORTHO05D002895 1.3e-14 84.0 133 38.3
BraA05t20946Z Brassica rapa HOM05D002743 ORTHO05D002895 2.2e-14 83.2 172 32.6
AL1G27780 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 2.9e-14 82.8 186 32.8
AT3G26010 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 2.9e-14 82.8 174 34.5
Thhalv10011517m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.9e-14 82.8 171 33.3
AL5G16370 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.7e-14 82.4 193 31.1
Thhalv10000704m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 4.9e-14 82.0 187 35.3
AL6G48160 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.1e-13 80.9 166 37.3
BcaC08g43169 Brassica carinata HOM05D002743 ORTHO05D002895 1.1e-13 80.9 194 33.5
C06p04690 Brassica napus HOM05D002743 ORTHO05D002895 1.1e-13 80.9 194 32.5
BolC6t35599H Brassica oleracea HOM05D002743 ORTHO05D002895 1.4e-13 80.5 141 36.9
Sp1g36850 Schrenkiella parvula HOM05D002743 ORTHO05D002895 1.8e-13 80.1 170 33.5
SpUn0137_0030 Schrenkiella parvula HOM05D002743 ORTHO05D002895 1.8e-13 80.1 170 33.5
THA.LOC104823978 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 2.4e-13 79.7 212 31.1
BcaB08g36410 Brassica carinata HOM05D002743 ORTHO05D002895 3.2e-13 79.3 188 34.6
AT1G49990 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 4.1e-13 79.0 136 37.5
BcaC01g00721 Brassica carinata HOM05D002743 ORTHO05D002895 4.1e-13 79.0 163 31.9
Carub.0004s1288 Capsella rubella HOM05D002743 ORTHO05D002895 4.1e-13 79.0 191 34.6
BcaNung04713 Brassica carinata HOM05D002743 ORTHO05D002895 5.4e-13 78.6 138 37.0
C01p14880 Brassica napus HOM05D002743 ORTHO05D002895 5.4e-13 78.6 131 37.4
AL5G14680 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 7.0e-13 78.2 181 32.0
AT4G22430 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.2e-12 77.4 185 32.4
BcaB08g36564 Brassica carinata HOM05D002743 ORTHO05D002895 1.2e-12 77.4 191 34.0
A05p20390 Brassica napus HOM05D002743 ORTHO05D002895 1.2e-12 77.4 172 32.0
A10p19100 Brassica napus HOM05D002743 ORTHO05D002895 1.6e-12 77.0 186 31.7
CARHR025250 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.6e-12 77.0 177 32.2
BcaNung04711 Brassica carinata HOM05D002743 ORTHO05D002895 2.7e-12 76.3 184 34.2
BraA10t43989Z Brassica rapa HOM05D002743 ORTHO05D002895 2.7e-12 76.3 187 33.2
CARHR229890 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.7e-12 76.3 152 34.9
AL6G43580 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.5e-12 75.9 198 31.8
BcaB07g33448 Brassica carinata HOM05D002743 ORTHO05D002895 3.5e-12 75.9 165 34.5
BcaC08g43177 Brassica carinata HOM05D002743 ORTHO05D002895 3.5e-12 75.9 166 34.9
BcaC09g51280 Brassica carinata HOM05D002743 ORTHO05D002895 3.5e-12 75.9 131 36.6
Thhalv10027176m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 3.5e-12 75.9 180 31.7
A06p03440 Brassica napus HOM05D002743 ORTHO05D002895 4.6e-12 75.5 166 34.3
A01p25990 Brassica napus HOM05D002743 ORTHO05D002895 6.0e-12 75.1 189 32.3
BcaB07g33451 Brassica carinata HOM05D002743 ORTHO05D002895 7.8e-12 74.7 190 33.7
BcaNung03477 Brassica carinata HOM05D002743 ORTHO05D002895 1.0e-11 74.3 168 32.7
BraA01t02518Z Brassica rapa HOM05D002743 ORTHO05D002895 1.0e-11 74.3 189 32.3
THA.LOC104824016 Tarenaya hassleriana HOM05D002743 ORTHO05D002895 1.0e-11 74.3 207 31.9
C06p04770 Brassica napus HOM05D002743 ORTHO05D002895 1.3e-11 73.9 166 34.3
AL6G43570 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.7e-11 73.6 199 29.1
CARHR040090 Cardamine hirsuta HOM05D002743 ORTHO05D002895 2.3e-11 73.2 203 31.0
BcaB07g33444 Brassica carinata HOM05D002743 ORTHO05D002895 3.0e-11 72.8 192 32.8
A02p35850 Brassica napus HOM05D002743 ORTHO05D002895 3.0e-11 72.8 186 32.3
Carub.0006s3136 Capsella rubella HOM05D002743 ORTHO05D002895 3.0e-11 72.8 202 31.2
Aa31LG9G5850 Aethionema arabicum HOM05D002743 ORTHO05D002895 3.9e-11 72.4 142 35.2
BcaB08g37317 Brassica carinata HOM05D002743 ORTHO05D002895 3.9e-11 72.4 189 32.3
AL3G39690 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 5.0e-11 72.0 185 31.9
Sp2g04630 Schrenkiella parvula HOM05D002743 ORTHO05D002895 5.0e-11 72.0 170 34.7
C02p54750 Brassica napus HOM05D002743 ORTHO05D002895 6.6e-11 71.6 186 32.8
AL1G57560 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 8.6e-11 71.2 160 31.9
BcaC04g22203 Brassica carinata HOM05D002743 ORTHO05D002895 8.6e-11 71.2 184 30.4
BraA02t08585Z Brassica rapa HOM05D002743 ORTHO05D002895 8.6e-11 71.2 191 32.5
BraA02t08589Z Brassica rapa HOM05D002743 ORTHO05D002895 8.6e-11 71.2 191 32.5
Sp5g25320 Schrenkiella parvula HOM05D002743 ORTHO05D002895 8.6e-11 71.2 203 31.5
AT3G28280 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.5e-10 70.5 187 26.7
BraA09t36068Z Brassica rapa HOM05D002743 ORTHO05D002895 1.5e-10 70.5 201 29.9
Carub.0005s0386 Capsella rubella HOM05D002743 ORTHO05D002895 1.5e-10 70.5 176 28.4
CARHR131260 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.9e-10 70.1 207 33.8
C09p22150 Brassica napus HOM05D002743 ORTHO05D002895 2.5e-10 69.7 184 30.4
Carub.0151s0001 Capsella rubella HOM05D002743 ORTHO05D002895 2.5e-10 69.7 176 32.4
Thhalv10019528m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.5e-10 69.7 143 35.0
Thhalv10013759m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 3.3e-10 69.3 176 30.7
Carub.0003s2456 Capsella rubella HOM05D002743 ORTHO05D002895 4.3e-10 68.9 86 46.5
C09p53870 Brassica napus HOM05D002743 ORTHO05D002895 5.6e-10 68.6 167 34.1
A09p17800 Brassica napus HOM05D002743 ORTHO05D002895 7.3e-10 68.2 184 31.0
BolC9t53387H Brassica oleracea HOM05D002743 ORTHO05D002895 7.3e-10 68.2 175 30.3
BraA09t37413Z Brassica rapa HOM05D002743 ORTHO05D002895 7.3e-10 68.2 184 31.0
AT3G28223 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 9.5e-10 67.8 170 30.6
BraA06t23552Z Brassica rapa HOM05D002743 ORTHO05D002895 9.5e-10 67.8 166 32.5
Carub.0007s1819 Capsella rubella HOM05D002743 ORTHO05D002895 9.5e-10 67.8 176 31.8
BcaB07g33449 Brassica carinata HOM05D002743 ORTHO05D002895 2.1e-09 66.6 189 30.2
BolC9t55130H Brassica oleracea HOM05D002743 ORTHO05D002895 2.1e-09 66.6 184 29.3
A09p04310 Brassica napus HOM05D002743 ORTHO05D002895 2.8e-09 66.2 201 29.4
SpUn0003_0080 Schrenkiella parvula HOM05D002743 ORTHO05D002895 2.8e-09 66.2 204 31.4
A10p19880 Brassica napus HOM05D002743 ORTHO05D002895 3.6e-09 65.9 191 30.4
BolC2t11536H Brassica oleracea HOM05D002743 ORTHO05D002895 3.6e-09 65.9 175 32.0
BcaC04g23796 Brassica carinata HOM05D002743 ORTHO05D002895 4.7e-09 65.5 177 29.9
BcaB07g31193 Brassica carinata HOM05D002743 ORTHO05D002895 1.4e-08 63.9 184 31.0
C06p04730 Brassica napus HOM05D002743 ORTHO05D002895 1.4e-08 63.9 144 33.3
AL5G18350 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 1.8e-08 63.5 196 29.6
AT3G28330 Arabidopsis thaliana HOM05D002743 ORTHO05D002895 1.8e-08 63.5 192 33.3
CARHR229330 Cardamine hirsuta HOM05D002743 ORTHO05D002895 1.8e-08 63.5 127 36.2
Thhalv10001535m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 2.3e-08 63.2 93 35.5
AL5G17810 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.1e-08 62.8 189 27.0
Thhalv10009395m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 3.1e-08 62.8 179 32.4
Carub.0008s0568 Capsella rubella HOM05D002743 ORTHO05D002895 4.0e-08 62.4 184 29.9
BcaC04g19490 Brassica carinata HOM05D002743 ORTHO05D002895 5.2e-08 62.0 195 29.7
BNapus_Darmor_BZH_scaffold_38p02050 Brassica napus HOM05D002743 ORTHO05D002895 5.2e-08 62.0 73 42.5
C09p55180 Brassica napus HOM05D002743 ORTHO05D002895 5.2e-08 62.0 195 29.7
BraA07t28566Z Brassica rapa HOM05D002743 ORTHO05D002895 8.9e-08 61.2 197 30.5
BcaC03g17512 Brassica carinata HOM05D002743 ORTHO05D002895 1.2e-07 60.8 169 31.4
BolC9t58379H Brassica oleracea HOM05D002743 ORTHO05D002895 1.2e-07 60.8 187 30.5
A07p07740 Brassica napus HOM05D002743 ORTHO05D002895 1.5e-07 60.5 197 29.9
BcaC04g23794 Brassica carinata HOM05D002743 ORTHO05D002895 2.0e-07 60.1 197 27.4
A02p35880 Brassica napus HOM05D002743 ORTHO05D002895 2.0e-07 60.1 143 33.6
BcaC06g35723 Brassica carinata HOM05D002743 ORTHO05D002895 2.6e-07 59.7 197 29.4
AL5G17850 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 3.4e-07 59.3 190 33.2
C07p11650 Brassica napus HOM05D002743 ORTHO05D002895 4.4e-07 58.9 197 29.4
C09p04610 Brassica napus HOM05D002743 ORTHO05D002895 5.8e-07 58.5 197 26.9
BolC9t53389H Brassica oleracea HOM05D002743 ORTHO05D002895 5.8e-07 58.5 197 26.9
A03p54310 Brassica napus HOM05D002743 ORTHO05D002895 7.5e-07 58.2 199 25.6
Carub.0005s1587 Capsella rubella HOM05D002743 ORTHO05D002895 7.5e-07 58.2 192 28.1
C04p44830 Brassica napus HOM05D002743 ORTHO05D002895 9.8e-07 57.8 199 29.6
BraA03t14493Z Brassica rapa HOM05D002743 ORTHO05D002895 1.3e-06 57.4 198 25.8
ATR1136G082 Amborella trichopoda HOM05D011842 ORTHO05D011366 1.7e-06 57.0 136 33.1
BcaC04g23797 Brassica carinata HOM05D002743 ORTHO05D002895 1.7e-06 57.0 200 28.0
BolC7t41637H Brassica oleracea HOM05D002743 ORTHO05D002895 1.7e-06 57.0 197 28.9
Carub.0005s0683 Capsella rubella HOM05D002743 ORTHO05D002895 1.7e-06 57.0 186 31.7
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 2.9e-06 56.2 89 36.0
AL5G18360 Arabidopsis lyrata HOM05D002743 ORTHO05D002895 4.9e-06 55.5 177 29.4
C09p56260 Brassica napus HOM05D002743 ORTHO05D002895 4.9e-06 55.5 137 35.0
Thhalv10023870m.g Eutrema salsugineum HOM05D002743 ORTHO05D002895 4.9e-06 55.5 118 34.7
Carub.0004s2674 Capsella rubella HOM05D002743 ORTHO05D002895 6.4e-06 55.1 177 27.7
ATR1136G071 Amborella trichopoda HOM05D011842 ORTHO05D011366 8.3e-06 54.7 132 31.8
BcaC04g19386 Brassica carinata HOM05D002743 ORTHO05D002895 8.3e-06 54.7 137 34.3
A04p11100 Brassica napus HOM05D002743 ORTHO05D002895 8.3e-06 54.7 199 29.1
BolC9t58495H Brassica oleracea HOM05D002743 ORTHO05D002895 8.3e-06 54.7 137 34.3
CARHR286050 Cardamine hirsuta HOM05D002743 ORTHO05D002895 8.3e-06 54.7 188 29.3
HanXRQChr02g0054011 Helianthus annuus HOM05D002420 ORTHO05D002422 8.3e-06 54.7 186 31.2


User provided reference genes

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