Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR029050 Cardamine hirsuta HOM05D004993 ORTHO05D008532 3.3e-192 674.9 340 100.0
AL1G43530 Arabidopsis lyrata HOM05D004993 ORTHO05D008532 7.2e-171 604.0 351 86.9
Carub.0001s2791 Capsella rubella HOM05D004993 ORTHO05D008532 9.4e-171 603.6 348 87.9
AT1G29700 Arabidopsis thaliana HOM05D004993 ORTHO05D008532 3.6e-170 601.7 351 86.3
Sp1g25580 Schrenkiella parvula HOM05D004993 ORTHO05D008532 8.5e-164 580.5 341 85.3
BraA08t34448Z Brassica rapa HOM05D004993 ORTHO05D008532 6.1e-162 574.3 355 83.1
A08p24930 Brassica napus HOM05D004993 ORTHO05D008532 6.8e-161 570.9 355 82.3
BcaC01g00125 Brassica carinata HOM05D004993 ORTHO05D008532 9.7e-160 567.0 358 82.4
C03p76040 Brassica napus HOM05D004993 ORTHO05D008532 2.8e-159 565.5 358 82.1
BolC3t19860H Brassica oleracea HOM05D004993 ORTHO05D008532 8.3e-159 563.9 358 81.6
BcaB03g12171 Brassica carinata HOM05D004993 ORTHO05D008532 1.0e-156 557.0 355 80.6
Aa31LG6G5980 Aethionema arabicum HOM05D004993 ORTHO05D008532 4.9e-143 511.5 337 77.4
Thhalv10009499m.g Eutrema salsugineum HOM05D004993 ORTHO05D008532 6.8e-137 491.1 351 74.4
THA.LOC104808209 Tarenaya hassleriana HOM05D004993 ORTHO05D008532 1.6e-133 479.9 343 70.3
Thecc.02G359900 Theobroma cacao HOM05D004993 ORTHO05D008532 7.1e-126 454.5 306 72.2
Cfa018620 Carpinus fangiana HOM05D004993 ORTHO05D008532 9.2e-126 454.1 337 67.7
TWI31G0395 Tripterygium wilfordii HOM05D004993 ORTHO05D008532 1.6e-125 453.4 312 72.8
TAR371G0197 Trochodendron aralioides HOM05D004993 ORTHO05D008532 6.0e-125 451.4 315 71.7
Gorai.008G185400 Gossypium raimondii HOM05D004993 ORTHO05D008532 5.1e-124 448.4 333 67.9
Gohir.D12G172900 Gossypium hirsutum HOM05D004993 ORTHO05D008532 8.6e-124 447.6 333 67.6
FvH4_4g27971 Fragaria vesca HOM05D004993 ORTHO05D008532 1.9e-123 446.4 281 76.2
Gohir.A12G170200 Gossypium hirsutum HOM05D004993 ORTHO05D008532 1.9e-123 446.4 294 73.1
Gohir.D12G173500 Gossypium hirsutum HOM05D004993 ORTHO05D008532 4.3e-123 445.3 294 73.5
CANSAT64G2606 Cannabis sativa HOM05D004993 ORTHO05D008532 9.5e-123 444.1 333 66.1
COL.COLO4_07879 Corchorus olitorius HOM05D004993 ORTHO05D008532 9.5e-123 444.1 309 71.8
Gorai.008G186000 Gossypium raimondii HOM05D004993 ORTHO05D008532 1.6e-122 443.4 294 73.1
Cc11_g10510 Coffea canephora HOM05D004993 ORTHO05D008532 2.1e-122 443.0 310 70.0
Gohir.A12G169600 Gossypium hirsutum HOM05D004993 ORTHO05D008532 2.1e-122 443.0 303 71.3
MD16G1046900 Malus domestica HOM05D004993 ORTHO05D008532 2.1e-122 443.0 305 72.1
FAN07G2608 Fragaria x ananassa HOM05D004993 ORTHO05D008532 2.8e-122 442.6 281 75.4
RcHm_v2.0_Chr4g0435691 Rosa chinensis HOM05D004993 ORTHO05D008532 4.7e-122 441.8 281 75.8
MSTRG.7682 Avicennia marina HOM05D004993 ORTHO05D008532 8.1e-122 441.0 295 70.8
Ciclev10031998m.g Citrus clementina HOM05D004993 ORTHO05D008532 1.8e-121 439.9 286 73.4
FAN17G0685 Fragaria x ananassa HOM05D004993 ORTHO05D008532 2.3e-121 439.5 281 75.1
CiPaw.16G003600 Carya illinoinensis HOM05D004993 ORTHO05D008532 3.1e-121 439.1 330 67.0
Lj3A1018T65 Lonicera japonica HOM05D004993 ORTHO05D008532 1.2e-120 437.2 283 72.1
Prupe.1G306400 Prunus persica HOM05D004993 ORTHO05D008532 1.2e-120 437.2 317 69.4
Haze_17449 Corylus avellana HOM05D004993 ORTHO05D008532 2.0e-120 436.4 391 59.3
Hma1.2p1_0862F.1_g229950 Hydrangea macrophylla HOM05D004993 ORTHO05D008532 2.6e-120 436.0 310 70.0
PGR102G1294 Punica granatum HOM05D004993 ORTHO05D008532 2.6e-120 436.0 295 71.2
Manes.14G098500 Manihot esculenta HOM05D004993 ORTHO05D008532 4.4e-120 435.3 283 73.5
Nitab4.5_0000582g0040 Nicotiana tabacum HOM05D004993 ORTHO05D008532 4.4e-120 435.3 319 67.1
Potri.008G117600 Populus trichocarpa HOM05D004993 ORTHO05D008532 4.4e-120 435.3 334 67.1
Duzib251G0893 Durio zibethinus HOM05D004993 ORTHO05D008532 1.3e-119 433.7 327 66.7
SalBow8G3546 Salvia bowleyana HOM05D004993 ORTHO05D008532 1.7e-119 433.3 289 72.0
Sc04g0006640 Simmondsia chinensis HOM05D004993 ORTHO05D008532 3.7e-119 432.2 300 71.7
Glyma.02G098700 Glycine max HOM05D004993 ORTHO05D008532 1.1e-118 430.6 308 68.5
Atru.chr11.1340 Acer truncatum HOM05D004993 ORTHO05D008532 1.4e-118 430.3 283 73.9
Lj2g0001269 Lotus japonicus HOM05D004993 ORTHO05D008532 1.4e-118 430.3 279 72.0
GSVIVG01011941001 Vitis vinifera HOM05D004993 ORTHO05D008532 1.4e-118 430.3 309 69.3
Aqoxy3G03926 Aquilegia oxysepala HOM05D004993 ORTHO05D008532 3.2e-118 429.1 323 64.4
Lalb_Chr17g0341941 Lupinus albus HOM05D004993 ORTHO05D008532 3.2e-118 429.1 281 71.9
PSO063G3032 Papaver somniferum HOM05D004993 ORTHO05D008532 4.1e-118 428.7 309 68.3
CSS0044433 Camellia sinensis var. sinensis HOM05D004993 ORTHO05D008532 5.4e-118 428.3 310 69.0
MBI16_g25106_MAGBIO Magnolia biondii HOM05D004993 ORTHO05D008532 5.4e-118 428.3 285 71.2
Phvul.003G028100 Phaseolus vulgaris HOM05D004993 ORTHO05D008532 1.6e-117 426.8 282 71.6
Lsat_1_v5_gn_4_20101 Lactuca sativa HOM05D004993 ORTHO05D008532 2.1e-117 426.4 285 71.9
VMungo1215G2957 Vigna mungo HOM05D004993 ORTHO05D008532 2.1e-117 426.4 317 67.8
AUR62002913 Chenopodium quinoa HOM05D004993 ORTHO05D008532 2.7e-117 426.0 281 73.0
HanXRQChr17g0567931 Helianthus annuus HOM05D004993 ORTHO05D008532 2.7e-117 426.0 305 68.5
Nn3g17764 Nelumbo nucifera HOM05D004993 ORTHO05D008532 6.0e-117 424.9 285 70.9
arahy.Tifrunner.gnm1.ann1.5ZE4QE Arachis hypogaea HOM05D004993 ORTHO05D008532 1.7e-116 423.3 281 71.9
MELO3C012219.2 Cucumis melo HOM05D004993 ORTHO05D008532 2.3e-116 422.9 299 69.2
CsaV3_5G034030 Cucumis sativus L. HOM05D004993 ORTHO05D008532 2.3e-116 422.9 327 64.2
arahy.Tifrunner.gnm1.ann1.VJ59XU Arachis hypogaea HOM05D004993 ORTHO05D008532 3.0e-116 422.5 311 67.5
Migut.O00833 Erythranthe guttata HOM05D004993 ORTHO05D008532 8.6e-116 421.0 284 71.5
TPR.G38312 Trifolium pratense HOM05D004993 ORTHO05D008532 1.5e-115 420.2 307 67.8
AUR62035273 Chenopodium quinoa HOM05D004993 ORTHO05D008532 5.6e-115 418.3 283 71.4
RhsimUnG0136600 Rhododendron simsii HOM05D004993 ORTHO05D008532 1.6e-114 416.8 256 75.4
EL10Ac6g14467 Beta vulgaris HOM05D004993 ORTHO05D008532 4.7e-114 415.2 322 65.8
Dinv16501 Davidia involucrata HOM05D004993 ORTHO05D008532 6.2e-114 414.8 305 68.5
unitig_8.g3446 Utricularia gibba HOM05D004993 ORTHO05D008532 6.2e-114 414.8 281 69.8
Sopen03g030820 Solanum pennellii HOM05D004993 ORTHO05D008532 8.1e-114 414.5 310 66.8
QL01p044817 Quercus lobata HOM05D004993 ORTHO05D008532 1.4e-113 413.7 314 66.2
ECA234G2629 Erigeron canadensis HOM05D004993 ORTHO05D008532 1.8e-113 413.3 280 72.1
Solyc03g111700.3 Solanum lycopersicum HOM05D004993 ORTHO05D008532 1.5e-112 410.2 294 68.7
Sed0024124 Sechium edule HOM05D004993 ORTHO05D008532 3.4e-112 409.1 325 64.6
SGA_v2.0_scaffold209G42027 Striga asiatica HOM05D004993 ORTHO05D008532 4.4e-112 408.7 358 59.8
CAN.G630.88 Capsicum annuum HOM05D004993 ORTHO05D008532 2.9e-111 406.0 338 61.5
Sabra08G0089200 Salix brachista HOM05D004993 ORTHO05D008532 2.9e-111 406.0 317 65.3
vmacro01368 Vaccinium macrocarpon HOM05D004993 ORTHO05D008532 2.9e-111 406.0 314 63.7
PGSC0003DMG402001731 Solanum tuberosum HOM05D004993 ORTHO05D008532 8.4e-111 404.4 307 66.1
ATR0681G095 Amborella trichopoda HOM05D004993 ORTHO05D008532 5.1e-108 395.2 337 60.5
CSS0008970 Camellia sinensis var. sinensis HOM05D004993 ORTHO05D008532 6.6e-108 394.8 259 72.6
Eucgr.B03043 Eucalyptus grandis HOM05D004993 ORTHO05D008532 8.7e-108 394.4 291 68.4
Hund05759 Selenicereus undatus HOM05D000924 ORTHO05D001209 1.1e-105 387.5 417 51.1
Peaxi162Scf00004g01611 Petunia axillaris HOM05D004993 ORTHO05D008532 1.8e-105 386.7 279 67.7
Medtr5g054360 Medicago truncatula HOM05D004993 ORTHO05D008532 4.0e-105 385.6 272 66.5
HPP92_005309 Vanilla planifolia HOM05D004993 ORTHO05D008532 9.0e-105 384.4 297 63.0
CDE04G2310 Ceratophyllum demersum HOM05D004993 ORTHO05D008532 8.4e-103 377.9 295 63.4
PSO782G1223 Papaver somniferum HOM05D004993 ORTHO05D008532 1.1e-99 367.5 309 61.8
Nitab4.5_0004719g0040 Nicotiana tabacum HOM05D004993 ORTHO05D008532 4.0e-97 359.0 229 74.7
Mapoly0053s0088 Marchantia polymorpha HOM05D004993 ORTHO05D008532 2.1e-93 346.7 296 57.4
SMO361G0287 Selaginella moellendorffii HOM05D004993 ORTHO05D008532 9.6e-91 337.8 264 59.8
Pp3c15_25860 Physcomitrium patens HOM05D004993 ORTHO05D008532 5.5e-86 322.0 275 57.1
AagrBONN_evm.TU.Sc2ySwM_344.778 Anthoceros agrestis HOM05D004993 ORTHO05D008532 1.8e-84 317.0 253 59.7
CiPaw.15G004200 Carya illinoinensis HOM05D004993 ORTHO05D008532 2.3e-84 316.6 276 60.1
Os12g0641300 Oryza sativa ssp. japonica HOM05D004993 ORTHO05D008532 2.3e-84 316.6 275 59.3
Ah.02g127080 Amaranthus hybridus HOM05D004993 ORTHO05D008532 1.5e-83 313.9 211 73.5
MD13G1045600 Malus domestica HOM05D004993 ORTHO05D008532 4.8e-82 308.9 329 52.3
Zm00001eb133920 Zea mays HOM05D004993 ORTHO05D008532 2.4e-81 306.6 287 57.5
Migut.L01091 Erythranthe guttata HOM05D004993 ORTHO05D008532 2.5e-70 270.0 154 76.6
Psat2g091800 Pisum sativum HOM05D004993 ORTHO05D008532 9.7e-67 258.1 191 66.5
Actinidia38387 Actinidia chinensis HOM05D004993 ORTHO05D008532 9.7e-59 231.5 151 70.2
Cpa.g.c35723 Carica papaya HOM05D004993 ORTHO05D008532 1.6e-53 214.2 134 73.9
CBR_g46806 Chara braunii HOM05D004993 ORTHO05D008532 1.6e-53 214.2 267 43.4
Hma1.2p1_0862F.1_g229960 Hydrangea macrophylla HOM05D004993 ORTHO05D008532 2.7e-53 213.4 134 73.1
Ca_20419_v3 Cicer arietinum L. HOM05D004993 ORTHO05D008532 5.2e-52 209.1 135 71.9
ECA248G2500 Erigeron canadensis HOM05D004993 ORTHO05D008532 5.3e-49 199.1 280 42.9
SEGI_28994 Sequoiadendron giganteum HOM05D004993 ORTHO05D008532 2.7e-45 186.8 136 64.0
Actinidia13671 Actinidia chinensis HOM05D004993 ORTHO05D008532 7.2e-38 162.2 97 77.3
Cre10.g442950 Chlamydomonas reinhardtii HOM05D004993 ORTHO05D008532 2.7e-32 143.7 299 31.1
Pp3c27_8380 Physcomitrium patens HOM05D004993 ORTHO05D008532 5.9e-32 142.5 256 35.2
MCO14G082 Micromonas commoda HOM05D004993 ORTHO05D008532 8.6e-31 138.7 292 34.2
CARHR029040 Cardamine hirsuta HOM05D004993 ORTHO05D008532 6.4e-26 122.5 103 68.0
SEGI_13194 Sequoiadendron giganteum HOM05D004993 ORTHO05D008532 7.0e-17 92.4 88 48.9
Migut.G01033 Erythranthe guttata HOM05D004993 ORTHO05D008532 2.4e-09 67.4 53 60.4


User provided reference genes

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