Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G2635 Cannabis sativa HOM05D006794 ORTHO05D008322 1.0e-98 363.6 210 100.0
CANSAT80G0659 Cannabis sativa HOM05D006794 ORTHO05D008322 1.2e-96 356.7 212 98.6
CANSAT64G0030 Cannabis sativa HOM05D006794 ORTHO05D008322 1.4e-47 193.7 166 74.1
Duzib068G0617 Durio zibethinus HOM05D006794 ORTHO05D008322 1.4e-47 193.7 211 59.2
Thecc.03G058000 Theobroma cacao HOM05D006794 ORTHO05D008322 1.4e-47 193.7 211 57.8
Dinv08202 Davidia involucrata HOM05D006794 ORTHO05D008322 1.8e-47 193.4 215 66.5
CiPaw.15G144200 Carya illinoinensis HOM05D006794 ORTHO05D008322 3.4e-46 189.1 212 59.9
arahy.Tifrunner.gnm1.ann1.PNUX28 Arachis hypogaea HOM05D006794 ORTHO05D008322 5.8e-46 188.3 210 65.2
arahy.Tifrunner.gnm1.ann1.AT27RE Arachis hypogaea HOM05D006794 ORTHO05D008322 7.6e-46 188.0 210 65.7
Medtr6g069830 Medicago truncatula HOM05D006794 ORTHO05D008322 2.2e-45 186.4 210 69.0
QL10p030576 Quercus lobata HOM05D006794 ORTHO05D008322 2.9e-45 186.0 210 58.1
Sed0024550 Sechium edule HOM05D006794 ORTHO05D008322 2.9e-45 186.0 210 67.1
ClCG04G010570 Citrullus lanatus HOM05D006794 ORTHO05D008322 3.8e-45 185.7 210 62.4
Hma1.2p1_0163F.1_g073020 Hydrangea macrophylla HOM05D006794 ORTHO05D008322 3.8e-45 185.7 211 65.9
CiPaw.16G095900 Carya illinoinensis HOM05D006794 ORTHO05D008322 8.4e-45 184.5 210 56.2
TPR.G8635 Trifolium pratense HOM05D006794 ORTHO05D008322 8.4e-45 184.5 210 69.0
Gorai.008G290400 Gossypium raimondii HOM05D006794 ORTHO05D008322 4.2e-44 182.2 212 58.5
Cpa.g.sc3.383 Carica papaya HOM05D006794 ORTHO05D008322 7.1e-44 181.4 211 62.6
RcHm_v2.0_Chr7g0178231 Rosa chinensis HOM05D006794 ORTHO05D008322 9.3e-44 181.0 206 65.5
Sabra15G0031400 Salix brachista HOM05D006794 ORTHO05D008322 1.2e-43 180.6 210 60.5
MD14G1237200 Malus domestica HOM05D006794 ORTHO05D008322 2.1e-43 179.9 215 63.3
Prupe.5G234500 Prunus persica HOM05D006794 ORTHO05D008322 2.1e-43 179.9 215 62.8
Duzib084G0148 Durio zibethinus HOM05D006794 ORTHO05D008322 4.6e-43 178.7 214 56.1
Potri.015G036900 Populus trichocarpa HOM05D006794 ORTHO05D008322 4.6e-43 178.7 210 66.7
Phvul.002G330800 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 6.0e-43 178.3 210 67.1
Potri.012G045700 Populus trichocarpa HOM05D006794 ORTHO05D008322 6.0e-43 178.3 210 65.7
VMungo0251G1205 Vigna mungo HOM05D006794 ORTHO05D008322 1.8e-42 176.8 210 66.7
Cfa021396 Carpinus fangiana HOM05D006794 ORTHO05D008322 2.3e-42 176.4 212 61.8
Lj2g0023485 Lotus japonicus HOM05D006794 ORTHO05D008322 2.3e-42 176.4 210 63.3
MD06G1228000 Malus domestica HOM05D006794 ORTHO05D008322 2.3e-42 176.4 214 63.1
FvH4_5g17460 Fragaria vesca HOM05D006794 ORTHO05D008322 3.0e-42 176.0 206 65.0
FAN18G3906 Fragaria x ananassa HOM05D006794 ORTHO05D008322 3.0e-42 176.0 206 65.0
FAN13G2800 Fragaria x ananassa HOM05D006794 ORTHO05D008322 5.1e-42 175.3 206 60.2
Glyma.08G055100 Glycine max HOM05D006794 ORTHO05D008322 5.1e-42 175.3 210 64.3
Lalb_Chr16g0386961 Lupinus albus HOM05D006794 ORTHO05D008322 6.7e-42 174.9 207 54.6
Cc04_g06140 Coffea canephora HOM05D006794 ORTHO05D008322 1.5e-41 173.7 216 60.6
Glyma.09G174700 Glycine max HOM05D006794 ORTHO05D008322 2.5e-41 172.9 208 62.5
Sopen03g037580 Solanum pennellii HOM05D006794 ORTHO05D008322 2.5e-41 172.9 212 64.6
Phvul.004G150000 Phaseolus vulgaris HOM05D006794 ORTHO05D008322 3.3e-41 172.6 208 61.5
VMungo0464G2014 Vigna mungo HOM05D006794 ORTHO05D008322 7.4e-41 171.4 208 61.1
GSVIVG01008463001 Vitis vinifera HOM05D006794 ORTHO05D008322 9.6e-41 171.0 205 57.1
Solyc03g118630.3 Solanum lycopersicum HOM05D006794 ORTHO05D008322 1.3e-40 170.6 212 63.2
CSS0048798 Camellia sinensis var. sinensis HOM05D006794 ORTHO05D008322 4.8e-40 168.7 215 63.7
Atru.chr9.1672 Acer truncatum HOM05D006794 ORTHO05D008322 6.2e-40 168.3 226 51.8
TWI81G0550 Tripterygium wilfordii HOM05D006794 ORTHO05D008322 6.2e-40 168.3 213 58.2
PGR083G0475 Punica granatum HOM05D006794 ORTHO05D008322 3.1e-39 166.0 212 62.3
PGSC0003DMG400005675 Solanum tuberosum HOM05D006794 ORTHO05D008322 6.9e-39 164.9 215 62.8
Lalb_Chr22g0353521 Lupinus albus HOM05D006794 ORTHO05D008322 1.5e-38 163.7 212 61.3
arahy.Tifrunner.gnm1.ann1.KQ26AL Arachis hypogaea HOM05D006794 ORTHO05D008322 2.6e-38 162.9 211 53.6
arahy.Tifrunner.gnm1.ann1.P2R0G6 Arachis hypogaea HOM05D006794 ORTHO05D008322 2.6e-38 162.9 211 53.6
Eucgr.B00988 Eucalyptus grandis HOM05D006794 ORTHO05D008322 5.8e-38 161.8 210 60.5
Sed0017400 Sechium edule HOM05D000034 ORTHO05D000037 5.8e-38 161.8 210 61.4
Nitab4.5_0001264g0020 Nicotiana tabacum HOM05D006794 ORTHO05D008322 1.0e-37 161.0 219 61.2
FAN08G0189 Fragaria x ananassa HOM05D006794 ORTHO05D008322 2.2e-37 159.8 206 63.1
FAN04G0930 Fragaria x ananassa HOM05D006794 ORTHO05D008322 3.2e-36 156.0 206 61.7
TAR622G0128 Trochodendron aralioides HOM05D006794 ORTHO05D008322 3.2e-36 156.0 208 60.6
Psat4g000080 Pisum sativum HOM05D006794 ORTHO05D008322 5.5e-36 155.2 207 49.8
Manes.06G005000 Manihot esculenta HOM05D006794 ORTHO05D008322 1.6e-35 153.7 221 57.9
Migut.D01320 Erythranthe guttata HOM05D006794 ORTHO05D008322 1.3e-34 150.6 195 51.8
MD01G1007300 Malus domestica HOM05D006794 ORTHO05D008322 1.3e-34 150.6 207 54.6
HanXRQChr01g0012541 Helianthus annuus HOM05D006794 ORTHO05D008322 1.9e-33 146.7 212 58.5
Lsat_1_v5_gn_5_175480 Lactuca sativa HOM05D006794 ORTHO05D008322 8.2e-32 141.4 222 55.9
Oeu046160.1 Olea europaea HOM05D006794 ORTHO05D008322 2.4e-31 139.8 213 46.5
Sp3g16080 Schrenkiella parvula HOM05D006794 ORTHO05D008322 1.5e-30 137.1 223 46.2
BcaC01g03720 Brassica carinata HOM05D006794 ORTHO05D008322 2.0e-30 136.7 224 50.9
Thhalv10021515m.g Eutrema salsugineum HOM05D006794 ORTHO05D008322 2.0e-30 136.7 221 55.7
PSO210G4985 Papaver somniferum HOM05D006794 ORTHO05D008322 2.6e-30 136.3 220 44.1
C03p49310 Brassica napus HOM05D006794 ORTHO05D008322 5.8e-30 135.2 224 50.4
Nn4g24277 Nelumbo nucifera HOM05D006794 ORTHO05D008322 5.8e-30 135.2 224 48.2
A03p40470 Brassica napus HOM05D006794 ORTHO05D008322 7.6e-30 134.8 224 48.7
PSO832G1236 Papaver somniferum HOM05D006794 ORTHO05D008322 3.8e-29 132.5 220 43.6
THA.LOC104825595 Tarenaya hassleriana HOM05D006794 ORTHO05D008322 5.0e-29 132.1 210 46.7
BcaC09g48759 Brassica carinata HOM05D006794 ORTHO05D008322 6.5e-29 131.7 223 44.8
C01p46200 Brassica napus HOM05D006794 ORTHO05D008322 6.5e-29 131.7 223 44.8
BolC1t04582H Brassica oleracea HOM05D006794 ORTHO05D008322 6.5e-29 131.7 223 44.8
BcaB04g18974 Brassica carinata HOM05D006794 ORTHO05D008322 8.4e-29 131.3 225 50.7
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 4.2e-28 129.0 182 59.3
AL3G31120 Arabidopsis lyrata HOM05D006794 ORTHO05D008322 7.9e-27 124.8 214 53.3
COL.COLO4_04996 Corchorus olitorius HOM05D006794 ORTHO05D008322 7.9e-27 124.8 168 61.9
Lj4g0014763 Lotus japonicus HOM05D006794 ORTHO05D008322 7.9e-27 124.8 212 45.8
Carub.0003s1768 Capsella rubella HOM05D006794 ORTHO05D008322 1.0e-26 124.4 223 51.6
MBI19_g22477_MAGBIO Magnolia biondii HOM05D006794 ORTHO05D008322 1.0e-26 124.4 210 50.5
BcaB04g20803 Brassica carinata HOM05D006794 ORTHO05D008322 5.1e-26 122.1 221 51.1
DCAR_013026 Daucus carota HOM05D006794 ORTHO05D008322 2.5e-25 119.8 206 53.9
MELO3C002138.2 Cucumis melo HOM05D006794 ORTHO05D008322 3.3e-25 119.4 165 57.6
BraA01t03709Z Brassica rapa HOM05D006794 ORTHO05D008322 2.2e-24 116.7 222 49.5
Psat1g031080 Pisum sativum HOM05D006794 ORTHO05D008322 2.8e-24 116.3 165 61.8
Ca_25344_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 6.3e-24 115.2 165 61.8
Gohir.A12G269600 Gossypium hirsutum HOM05D006794 ORTHO05D008322 1.4e-23 114.0 167 50.3
ECA248G0187 Erigeron canadensis HOM05D006794 ORTHO05D008322 3.1e-23 112.8 225 52.0
A01p36460 Brassica napus HOM05D006794 ORTHO05D008322 9.0e-23 111.3 225 48.4
Gohir.D12G270100 Gossypium hirsutum HOM05D006794 ORTHO05D008322 2.0e-22 110.2 167 49.7
Nitab4.5_0010223g0030 Nicotiana tabacum HOM05D006794 ORTHO05D008322 2.6e-22 109.8 221 52.0
vmacro16409 Vaccinium macrocarpon HOM05D006794 ORTHO05D008322 4.5e-22 109.0 188 51.1
Haze_18880 Corylus avellana HOM05D006794 ORTHO05D008322 5.0e-21 105.5 170 52.4
Glyma.07G103100 Glycine max HOM05D006794 ORTHO05D008322 1.4e-20 104.0 163 55.2
Sabra12G0031800 Salix brachista HOM05D006794 ORTHO05D008322 1.4e-20 104.0 165 57.6
SalBow1G0629 Salvia bowleyana HOM05D006794 ORTHO05D008322 3.6e-19 99.4 182 53.8
Ca_17183_v3 Cicer arietinum L. HOM05D006794 ORTHO05D008322 1.8e-18 97.1 158 42.4
Ciclev10009814m.g Citrus clementina HOM05D006794 ORTHO05D008322 1.3e-16 90.9 164 50.6
CARHR093280 Cardamine hirsuta HOM05D006794 ORTHO05D008322 2.2e-16 90.1 191 47.6
HPP92_008000 Vanilla planifolia HOM05D006794 ORTHO05D008322 3.7e-16 89.4 202 42.1
Peaxi162Scf00314g00315 Petunia axillaris HOM05D006794 ORTHO05D008322 6.3e-16 88.6 167 55.1
AT3G17950 Arabidopsis thaliana HOM05D006794 ORTHO05D008322 7.7e-14 81.6 186 45.7
Oeu004474.1 Olea europaea HOM05D006794 ORTHO05D008322 5.0e-13 79.0 82 59.8
CDE05G2986 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 2.5e-12 76.6 165 41.2
SGA_v2.0_scaffold172G39018 Striga asiatica HOM05D006794 ORTHO05D008322 7.2e-12 75.1 144 43.8
Aa31LG8G4820 Aethionema arabicum HOM05D006794 ORTHO05D008322 3.6e-11 72.8 195 36.9
C05p26280 Brassica napus HOM05D006794 ORTHO05D008322 3.9e-10 69.3 101 47.5
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 3.3e-09 66.2 155 35.5
CDE07G1050 Ceratophyllum demersum HOM05D006794 ORTHO05D008322 3.3e-09 66.2 50 80.0
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 7.4e-09 65.1 174 35.6
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 7.4e-09 65.1 191 35.1
Nn2g15270 Nelumbo nucifera HOM05D006794 ORTHO05D008322 7.4e-09 65.1 129 41.9
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 7.4e-09 65.1 159 38.4
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 9.7e-09 64.7 166 34.9
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 1.3e-08 64.3 115 41.7
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 1.7e-08 63.9 162 36.4
Os02g0733400 Oryza sativa ssp. japonica HOM05D006794 ORTHO05D008322 1.7e-08 63.9 203 43.3
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 2.8e-08 63.2 160 35.6
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 2.8e-08 63.2 176 33.5
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 3.7e-08 62.8 170 32.9
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 3.7e-08 62.8 167 34.1
SEGI_38129 Sequoiadendron giganteum HOM05D003527 ORTHO05D004099 3.7e-08 62.8 197 31.0
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 4.8e-08 62.4 165 35.8
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 4.8e-08 62.4 168 33.9
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 6.3e-08 62.0 161 36.0
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 8.2e-08 61.6 119 41.2
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 8.2e-08 61.6 119 41.2
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 1.1e-07 61.2 178 35.4
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 1.1e-07 61.2 164 43.9
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 1.4e-07 60.8 166 36.1
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.4e-07 60.8 166 36.1
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 1.4e-07 60.8 176 33.5
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 1.8e-07 60.5 162 36.4
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 1.8e-07 60.5 183 32.2
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 2.4e-07 60.1 154 34.4
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.4e-07 60.1 168 34.5
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 2.4e-07 60.1 174 32.8
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 2.4e-07 60.1 161 33.5
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.1e-07 59.7 172 32.0
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.1e-07 59.7 172 32.0
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 4.1e-07 59.3 119 41.2
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 5.3e-07 58.9 172 36.6
CsaV3_6G016930 Cucumis sativus L. HOM05D003527 ORTHO05D004099 7.0e-07 58.5 187 36.4
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 7.0e-07 58.5 188 33.5
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 9.1e-07 58.2 121 40.5
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 9.1e-07 58.2 165 35.8
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 9.1e-07 58.2 165 33.9
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 1.2e-06 57.8 204 35.8
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 1.2e-06 57.8 188 33.0
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.2e-06 57.8 119 39.5
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 1.5e-06 57.4 182 35.7
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 1.5e-06 57.4 162 34.6
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.5e-06 57.4 65 56.9
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 1.5e-06 57.4 170 33.5
CSS0044295 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 2.0e-06 57.0 164 31.7
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 2.0e-06 57.0 177 34.5
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 2.0e-06 57.0 167 36.5
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.0e-06 57.0 165 34.5
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 2.0e-06 57.0 171 37.4
Sed0026502 Sechium edule HOM05D003527 ORTHO05D004099 2.0e-06 57.0 115 38.3
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 2.0e-06 57.0 53 60.4
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 2.6e-06 56.6 166 33.7
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 2.6e-06 56.6 35 82.9
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 2.6e-06 56.6 119 39.5
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 2.6e-06 56.6 35 80.0
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 3.5e-06 56.2 120 40.0
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 4.5e-06 55.8 160 36.9
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 4.5e-06 55.8 160 36.9
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 4.5e-06 55.8 160 36.9
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 4.5e-06 55.8 115 37.4
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 4.5e-06 55.8 175 32.6
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 4.5e-06 55.8 120 39.2
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 5.9e-06 55.5 35 80.0
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 5.9e-06 55.5 65 55.4
Nitab4.5_0007604g0010 Nicotiana tabacum HOM05D003527 ORTHO05D004099 5.9e-06 55.5 146 34.2
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 5.9e-06 55.5 122 37.7
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 7.7e-06 55.1 35 80.0


User provided reference genes

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