Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 2.2e-296 1021.5 511 100.0
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 3.1e-234 815.1 509 78.4
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 5.3e-234 814.3 509 78.4
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 2.0e-233 812.4 508 78.1
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 1.3e-232 809.7 512 77.5
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 8.4e-232 807.0 512 78.1
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 1.1e-231 806.6 508 77.8
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 1.4e-231 806.2 509 78.0
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 3.2e-231 805.1 508 78.3
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 5.5e-231 804.3 512 78.3
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 3.5e-230 801.6 513 77.6
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 6.0e-230 800.8 508 77.4
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 9.6e-228 793.5 513 76.2
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 1.3e-227 793.1 507 76.7
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 1.6e-227 792.7 514 76.3
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 4.8e-227 791.2 507 76.7
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 4.8e-227 791.2 509 76.0
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 8.1e-227 790.4 509 76.6
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 6.9e-226 787.3 506 76.7
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 6.9e-226 787.3 509 76.4
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 7.6e-225 783.9 508 75.8
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 1.0e-224 783.5 507 75.9
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 6.5e-224 780.8 509 75.6
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 1.1e-223 780.0 508 75.0
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 2.3e-221 772.3 508 74.4
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 8.7e-221 770.4 507 74.2
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 1.1e-220 770.0 508 75.2
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 1.1e-220 770.0 507 74.8
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.5e-220 768.8 547 70.7
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 9.6e-220 766.9 507 74.4
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 1.3e-219 766.5 508 73.6
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 1.6e-219 766.1 547 70.2
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 2.1e-219 765.8 547 70.2
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.4e-218 763.1 512 73.6
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.8e-218 762.7 513 73.7
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.9e-216 755.4 508 73.8
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.0e-216 754.6 512 74.6
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.0e-216 754.6 512 73.2
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.5e-215 752.3 512 74.6
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.2e-214 750.0 476 76.5
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.2e-214 750.0 513 73.3
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 2.1e-214 749.2 512 73.4
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 2.7e-214 748.8 512 72.9
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 4.6e-214 748.0 511 73.8
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 7.9e-214 747.3 507 73.2
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 7.9e-214 747.3 513 72.1
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 7.9e-214 747.3 479 76.0
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.3e-213 746.5 513 72.9
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 3.0e-213 745.3 507 72.8
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 3.9e-213 745.0 507 72.8
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 5.1e-213 744.6 508 72.0
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 8.7e-213 743.8 511 72.4
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 8.7e-213 743.8 474 76.8
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 1.1e-212 743.4 504 72.8
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 2.5e-212 742.3 508 72.8
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 4.3e-212 741.5 508 72.8
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 4.3e-212 741.5 508 72.8
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 9.7e-212 740.3 507 71.8
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 1.6e-211 739.6 510 71.6
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 2.8e-211 738.8 507 72.4
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 2.8e-211 738.8 508 72.6
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 2.8e-211 738.8 507 73.2
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.8e-211 738.8 492 74.2
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 3.7e-211 738.4 513 71.9
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 4.8e-211 738.0 515 71.8
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 8.2e-211 737.3 509 72.1
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 8.2e-211 737.3 510 71.4
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 1.8e-210 736.1 507 72.8
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 2.4e-210 735.7 507 72.2
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 2.4e-210 735.7 506 72.3
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 3.1e-210 735.3 510 72.4
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 4.1e-210 734.9 600 64.3
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 5.3e-210 734.6 507 72.8
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 5.3e-210 734.6 508 72.2
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 6.9e-210 734.2 478 77.6
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 2.6e-209 732.3 507 72.0
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 1.0e-208 730.3 507 72.2
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 1.0e-208 730.3 510 70.2
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 2.2e-208 729.2 507 72.2
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 5.0e-208 728.0 507 72.2
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 5.0e-208 728.0 507 72.2
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 6.5e-208 727.6 512 69.9
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 1.4e-207 726.5 507 72.2
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.2e-206 723.4 499 71.9
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.2e-206 723.4 499 72.1
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 2.1e-206 722.6 508 71.9
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 3.9e-205 718.4 513 68.8
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 5.1e-205 718.0 507 70.6
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 6.7e-205 717.6 514 69.8
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 1.1e-204 716.8 514 68.9
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 5.7e-204 714.5 489 73.2
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 7.4e-204 714.1 512 71.9
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 9.7e-204 713.8 512 71.9
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.1e-202 710.3 510 69.6
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 4.1e-202 708.4 508 69.7
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 4.1e-202 708.4 529 66.7
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 2.6e-201 705.7 452 78.3
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 5.9e-201 704.5 506 69.6
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.0e-200 703.7 537 68.7
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 1.0e-200 703.7 459 74.7
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 2.2e-200 702.6 517 67.9
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 9.4e-199 697.2 566 64.8
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 8.8e-197 690.6 510 67.3
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 2.2e-195 686.0 519 66.1
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 1.8e-194 682.9 449 75.5
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 5.0e-192 674.9 586 59.9
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 5.5e-191 671.4 498 67.9
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 9.4e-191 670.6 509 67.6
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 3.0e-189 665.6 524 65.8
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.2e-189 664.8 510 67.6
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 1.2e-188 663.7 512 67.4
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 5.7e-188 661.4 512 66.2
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 1.7e-187 659.8 510 64.5
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 1.1e-186 657.1 470 69.1
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.8e-186 656.4 526 65.2
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 9.1e-186 654.1 450 72.2
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 9.1e-186 654.1 510 64.7
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 4.5e-185 651.7 503 65.4
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.3e-184 650.2 503 64.4
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 2.9e-184 649.0 511 63.0
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 1.4e-181 640.2 511 64.0
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 1.4e-173 613.6 512 62.5
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 4.9e-171 605.1 402 74.1
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 7.3e-167 591.3 402 71.9
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 3.3e-159 565.8 475 62.9
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 7.8e-153 544.7 537 53.3
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 7.8e-153 544.7 545 52.3
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 1.2e-148 530.8 453 60.7
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 1.7e-147 526.9 662 47.1
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 5.1e-144 515.4 416 61.1
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 2.0e-132 476.9 338 69.2
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 2.0e-124 450.3 510 50.8
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.6e-121 440.7 279 79.9
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 2.8e-118 429.9 273 76.6
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 1.9e-106 390.6 279 70.6
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 2.8e-86 323.6 245 68.2
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 6.5e-83 312.4 265 60.0
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 5.5e-82 309.3 211 69.7
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 1.1e-77 295.0 260 58.5
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 1.6e-73 281.2 218 65.6
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 1.5e-71 274.6 503 38.0
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 1.5e-66 258.1 561 32.8
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.1e-57 227.6 387 35.9
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 6.6e-43 179.5 143 62.9
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 1.6e-41 174.9 106 82.1
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.1e-41 174.5 188 51.1
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.7e-35 154.8 121 66.1
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.1e-34 152.1 183 42.6
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.3e-32 144.4 247 40.5
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 3.1e-32 144.1 112 59.8
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 6.8e-32 142.9 247 40.1
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 1.3e-27 128.6 68 86.8
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 9.5e-26 122.5 103 65.0
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 6.6e-19 99.8 166 30.1
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 1.5e-15 88.6 73 64.4
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 7.6e-15 86.3 113 46.9
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 9.3e-13 79.3 61 67.2
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 4.3e-10 70.5 147 32.7
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 6.2e-09 66.6 124 30.6
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.4e-08 65.5 105 41.9
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 2.4e-08 64.7 85 43.5
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.0e-08 63.9 36 83.3
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 2.9e-06 57.8 36 72.2


User provided reference genes

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