Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 1.0e-154 550.1 281 100.0
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 2.1e-120 436.0 282 77.3
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 6.9e-119 431.0 281 75.4
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 2.3e-114 416.0 288 73.3
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 3.7e-112 408.7 281 70.1
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 1.4e-111 406.8 286 71.7
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 3.1e-111 405.6 276 74.3
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 4.5e-110 401.7 273 71.8
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 4.5e-110 401.7 275 72.0
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 5.9e-110 401.4 273 72.5
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 7.6e-110 401.0 276 73.9
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 7.6e-110 401.0 272 73.5
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 6.5e-109 397.9 273 71.1
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 6.5e-109 397.9 268 74.3
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 3.2e-108 395.6 274 71.5
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 2.1e-107 392.9 278 73.0
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 2.7e-107 392.5 275 69.8
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 3.6e-107 392.1 273 70.3
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 7.9e-107 391.0 288 69.1
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 1.3e-106 390.2 275 70.2
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 5.1e-106 388.3 271 71.2
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 6.7e-106 387.9 278 68.7
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 6.7e-106 387.9 278 68.7
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 1.5e-105 386.7 278 69.1
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 3.3e-105 385.6 276 67.8
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 3.3e-105 385.6 279 67.4
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 9.7e-105 384.0 278 70.1
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 2.8e-104 382.5 280 70.7
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 4.8e-104 381.7 281 70.5
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 6.3e-104 381.3 274 68.2
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 6.3e-104 381.3 272 70.6
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 1.1e-103 380.6 276 71.0
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 3.1e-103 379.0 276 67.0
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 3.1e-103 379.0 280 70.0
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 3.1e-103 379.0 274 68.2
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 4.1e-103 378.6 273 68.9
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 5.3e-103 378.3 272 69.1
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 5.3e-103 378.3 268 72.8
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 6.9e-103 377.9 273 68.9
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 4.5e-102 375.2 274 67.5
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 5.9e-102 374.8 280 69.6
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 1.0e-101 374.0 267 71.5
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 6.5e-101 371.3 271 70.1
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 6.5e-101 371.3 276 69.6
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 1.1e-100 370.5 276 67.4
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 1.1e-100 370.5 281 65.5
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 4.2e-100 368.6 271 71.2
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 5.5e-100 368.2 271 66.4
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 3.6e-99 365.5 271 68.3
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 6.1e-99 364.8 291 66.3
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 1.0e-98 364.0 268 70.1
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 1.4e-98 363.6 274 69.0
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 1.8e-98 363.2 287 66.2
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 6.7e-98 361.3 283 66.8
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 2.0e-97 359.8 274 68.2
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 1.1e-95 354.0 273 64.5
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 1.4e-95 353.6 273 62.6
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 1.8e-95 353.2 274 63.1
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 1.2e-94 350.5 278 66.5
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 1.3e-93 347.1 273 62.3
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 2.5e-92 342.8 325 54.5
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 3.2e-92 342.4 273 62.3
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 3.6e-91 339.0 273 61.9
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 4.7e-91 338.6 288 60.1
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 3.0e-90 335.9 300 59.0
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 3.0e-90 335.9 322 55.6
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 3.9e-90 335.5 268 64.9
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 3.9e-90 335.5 322 55.3
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 3.3e-89 332.4 237 70.9
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 9.7e-89 330.9 279 60.6
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 2.2e-88 329.7 209 76.1
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 6.3e-88 328.2 274 62.4
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 6.3e-88 328.2 274 62.4
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 2.4e-87 326.2 273 61.2
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 4.1e-87 325.5 273 60.8
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 4.1e-87 325.5 210 74.8
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 2.6e-86 322.8 273 60.4
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 2.9e-85 319.3 271 62.0
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 2.7e-83 312.8 197 79.2
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 1.8e-82 310.1 244 63.9
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 1.5e-81 307.0 273 58.6
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 5.3e-79 298.5 248 61.7
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 4.5e-78 295.4 214 65.9
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 1.3e-77 293.9 273 56.8
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 6.5e-77 291.6 209 66.0
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 1.0e-74 284.3 230 60.4
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 2.8e-72 276.2 234 59.4
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.2e-70 270.8 239 58.2
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 1.6e-70 270.4 239 56.9
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 7.7e-70 268.1 219 63.0
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 1.0e-66 257.7 191 69.1
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 2.3e-66 256.5 225 56.9
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 2.7e-62 243.0 174 69.5
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 1.0e-61 241.1 223 57.4
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 1.7e-61 240.4 179 65.9
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 1.2e-59 234.2 169 70.4
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 4.0e-58 229.2 176 64.2
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 1.2e-54 217.6 217 56.2
Nitab4.5_0001642g0020 Nicotiana tabacum HOM05D006519 ORTHO05D008306 1.4e-50 204.1 133 75.9
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 9.8e-49 198.0 190 53.2
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 3.5e-46 189.5 172 58.1
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 1.5e-44 184.1 258 45.7
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 1.8e-42 177.2 305 37.4
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 1.2e-38 164.5 102 80.4
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 5.1e-37 159.1 100 74.0
Nitab4.5_0001642g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 2.5e-36 156.8 130 59.2
Actinidia19081 Actinidia chinensis HOM05D006519 ORTHO05D008306 2.1e-35 153.7 141 56.0
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 1.8e-34 150.6 126 59.5
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 3.4e-33 146.4 105 61.9
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 1.1e-31 141.4 104 67.3
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 1.7e-29 134.0 97 66.0
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 2.3e-29 133.7 105 62.9
CDE06G0478 Ceratophyllum demersum HOM05D006519 ORTHO05D008306 3.1e-26 123.2 83 68.7
Dinv20697 Davidia involucrata HOM05D006519 ORTHO05D008306 5.2e-26 122.5 121 53.7
Os06g0239000 Oryza sativa ssp. japonica HOM05D006519 ORTHO05D008306 4.4e-25 119.4 101 59.4
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 9.9e-25 118.2 103 59.2
PRCOL_00000545 Prasinoderma coloniale HOM05D006519 ORTHO05D008306 1.9e-20 104.0 233 32.2
BcaC05g25762 Brassica carinata HOM05D006519 ORTHO05D008306 2.5e-20 103.6 86 60.5
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 1.1e-18 98.2 86 54.7
arahy.Tifrunner.gnm1.ann1.RNN7F2 Arachis hypogaea HOM05D006519 ORTHO05D008306 1.9e-15 87.4 65 64.6
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 2.4e-15 87.0 68 61.8
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-15 86.3 96 51.0
SEGI_16810 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 3.0e-13 80.1 50 74.0
arahy.Tifrunner.gnm1.ann1.PY279F Arachis hypogaea HOM05D006519 ORTHO05D008306 8.7e-13 78.6 65 61.5
Potri.015G071001 Populus trichocarpa HOM05D006519 ORTHO05D008306 4.3e-12 76.3 54 68.5


User provided reference genes

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