Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 1.0e-154 550.1 277 100.0
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 1.3e-109 400.2 286 77.3
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 2.1e-107 392.9 277 76.2
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 3.5e-107 392.1 283 77.7
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 6.0e-107 391.3 279 75.6
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 7.8e-107 391.0 283 75.3
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 1.0e-106 390.6 289 75.1
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 2.3e-106 389.4 233 85.8
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 3.0e-106 389.0 215 91.6
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 1.1e-105 387.1 285 76.1
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.5e-105 386.0 222 87.4
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 3.3e-105 385.6 283 75.3
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 4.3e-105 385.2 237 84.8
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 5.6e-105 384.8 234 85.5
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 7.3e-105 384.4 233 86.3
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 7.3e-105 384.4 285 75.1
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 1.2e-104 383.6 281 74.0
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 1.6e-104 383.3 215 90.2
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 2.1e-104 382.9 260 79.6
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 2.1e-104 382.9 289 74.7
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 2.1e-104 382.9 281 74.0
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 2.8e-104 382.5 284 75.0
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 6.2e-104 381.3 289 73.4
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 6.2e-104 381.3 236 84.3
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 1.1e-103 380.6 269 74.3
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 1.8e-103 379.8 268 76.1
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 2.3e-103 379.4 281 74.4
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 4.0e-103 378.6 287 73.5
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 6.8e-103 377.9 275 75.3
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 6.8e-103 377.9 271 74.5
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 6.8e-103 377.9 275 73.8
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 8.9e-103 377.5 286 71.7
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.2e-102 377.1 276 74.3
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 1.2e-102 377.1 286 74.5
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 1.5e-102 376.7 283 72.8
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.5e-102 376.7 241 80.5
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 2.0e-102 376.3 244 79.5
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 2.0e-102 376.3 290 73.1
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 4.4e-102 375.2 247 78.9
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 4.4e-102 375.2 226 83.2
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 5.8e-102 374.8 275 73.8
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 5.8e-102 374.8 213 87.8
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 7.6e-102 374.4 249 79.9
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.7e-101 373.2 273 74.0
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 2.2e-101 372.9 225 85.3
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 2.2e-101 372.9 216 89.8
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 2.2e-101 372.9 285 73.0
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 2.9e-101 372.5 288 71.9
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 2.9e-101 372.5 228 81.6
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 2.9e-101 372.5 278 74.5
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.9e-101 372.5 282 72.7
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 2.9e-101 372.5 275 73.8
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 2.9e-101 372.5 216 87.0
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 2.9e-101 372.5 282 71.6
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 3.7e-101 372.1 289 71.6
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 4.9e-101 371.7 283 72.4
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 4.9e-101 371.7 225 84.0
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 6.4e-101 371.3 283 72.1
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 8.4e-101 370.9 198 93.4
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 8.4e-101 370.9 214 86.9
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 1.1e-100 370.5 283 71.7
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.1e-100 370.5 281 74.0
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 1.1e-100 370.5 237 81.4
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 1.4e-100 370.2 275 74.5
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 1.4e-100 370.2 223 84.8
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.9e-100 369.8 279 74.2
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 1.9e-100 369.8 281 74.0
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 1.9e-100 369.8 278 72.3
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 2.4e-100 369.4 209 87.6
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 2.4e-100 369.4 232 81.9
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 3.2e-100 369.0 209 88.5
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 3.2e-100 369.0 207 88.9
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 3.2e-100 369.0 217 86.2
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 5.4e-100 368.2 286 70.3
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 7.1e-100 367.9 229 83.4
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 9.2e-100 367.5 225 82.7
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 9.2e-100 367.5 225 82.7
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 9.2e-100 367.5 277 73.3
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 1.2e-99 367.1 225 82.7
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 1.2e-99 367.1 215 85.6
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 1.6e-99 366.7 286 70.3
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 3.5e-99 365.5 258 74.4
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 3.5e-99 365.5 296 70.3
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 6.0e-99 364.8 228 82.0
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 6.0e-99 364.8 225 80.4
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 7.8e-99 364.4 284 70.8
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 1.7e-98 363.2 278 73.4
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 2.3e-98 362.8 251 75.7
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 2.3e-98 362.8 205 88.8
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 3.9e-98 362.1 222 82.4
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 6.6e-98 361.3 228 79.8
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 1.5e-97 360.1 257 74.7
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 1.9e-97 359.8 215 83.7
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 2.5e-97 359.4 274 73.4
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 5.6e-97 358.2 215 83.3
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 7.3e-97 357.8 215 83.3
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 2.1e-96 356.3 214 84.1
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 2.1e-96 356.3 218 80.7
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 2.1e-96 356.3 282 69.9
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 1.1e-95 354.0 198 87.9
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 1.4e-95 353.6 220 80.9
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.4e-95 353.6 213 83.6
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.4e-95 353.6 189 91.5
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 1.8e-95 353.2 283 69.3
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 4.0e-95 352.1 231 78.8
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 5.2e-95 351.7 218 80.3
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 6.8e-95 351.3 215 81.9
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 3.4e-94 349.0 198 86.4
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 5.8e-94 348.2 198 86.9
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 1.9e-92 343.2 204 84.8
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 3.2e-92 342.4 198 84.3
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 3.5e-91 339.0 208 82.7
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 1.0e-90 337.4 248 73.8
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 8.7e-90 334.3 291 67.7
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 9.6e-89 330.9 257 69.6
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 2.1e-88 329.7 239 75.3
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 6.9e-87 324.7 196 81.6
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.2e-86 323.9 280 68.2
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.2e-86 323.9 317 61.5
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.3e-85 320.5 198 82.3
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 3.8e-85 318.9 247 70.4
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 7.1e-84 314.7 274 68.2
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 1.2e-83 313.9 166 92.2
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 1.5e-81 307.0 166 91.0
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 1.3e-80 303.9 202 74.3
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.1e-79 300.8 206 75.2
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 1.1e-76 290.8 235 62.6
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 2.7e-75 286.2 178 80.9
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 3.5e-75 285.8 153 90.2
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.0e-74 284.3 175 81.1
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 6.7e-74 281.6 152 89.5
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 8.7e-74 281.2 192 77.1
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.8e-72 276.2 151 89.4
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 4.8e-72 275.4 168 79.2
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 6.2e-72 275.0 148 87.8
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 1.4e-71 273.9 238 62.6
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.8e-71 273.5 224 67.9
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.6e-70 269.6 158 83.5
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.1e-68 264.2 159 84.3
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 1.2e-67 260.8 229 66.8
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 6.0e-67 258.5 213 68.1
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 6.7e-66 255.0 220 65.0
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 1.9e-65 253.4 203 68.0
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.8e-64 249.6 149 83.9
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 4.2e-60 235.7 232 59.5
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 1.2e-59 234.2 167 74.9
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 5.1e-58 228.8 138 79.0
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 6.3e-56 221.9 198 50.0
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 1.3e-53 214.2 145 80.0
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 2.8e-48 196.4 352 40.1
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 1.4e-47 194.1 159 64.8
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 9.1e-47 191.4 128 76.6
CANSAT78G1446 Cannabis sativa HOM05D007072 ORTHO05D008841 8.2e-40 168.3 98 88.8
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 5.3e-39 165.6 145 60.0
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 2.2e-37 160.2 188 44.1
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 1.2e-35 154.5 200 41.0
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 3.3e-33 146.4 228 39.9
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 5.3e-31 139.0 79 86.1
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 3.8e-21 106.3 62 82.3
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 1.9e-20 104.0 62 80.6
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 1.2e-19 101.3 83 67.5
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 4.4e-17 92.8 59 79.7
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.2e-11 74.7 41 87.8
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.0e-10 71.6 36 91.7
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.3e-10 70.5 36 88.9
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 5.2e-10 69.3 64 60.9
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 2.0e-09 67.4 118 36.4
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 2.0e-09 67.4 39 84.6
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 2.6e-09 67.0 51 68.6
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 6.4e-08 62.4 42 71.4
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 8.3e-08 62.0 32 90.6
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.1e-07 59.7 34 82.4
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 5.9e-06 55.8 31 83.9


User provided reference genes

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