Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1968 Cannabis sativa HOM05D006266 ORTHO05D008016 0.0e+00 1367.4 663 100.0
Prupe.1G197500 Prunus persica HOM05D006266 ORTHO05D008016 5.4e-311 1070.5 667 78.4
Duzib151G0889 Durio zibethinus HOM05D006266 ORTHO05D008016 5.9e-302 1040.4 638 79.0
Gohir.A10G139200 Gossypium hirsutum HOM05D006266 ORTHO05D008016 2.7e-299 1031.6 632 78.5
Thecc.04G175700 Theobroma cacao HOM05D006266 ORTHO05D008016 3.6e-299 1031.2 605 81.0
QL10p050722 Quercus lobata HOM05D006266 ORTHO05D008016 1.5e-297 1025.8 681 74.7
Gorai.011G140700 Gossypium raimondii HOM05D006266 ORTHO05D008016 2.0e-297 1025.4 638 77.9
Atru.chr4.1256 Acer truncatum HOM05D006266 ORTHO05D008016 9.7e-297 1023.1 634 78.9
Gohir.D10G127600 Gossypium hirsutum HOM05D006266 ORTHO05D008016 1.3e-296 1022.7 638 77.6
Manes.11G123500 Manihot esculenta HOM05D006266 ORTHO05D008016 2.4e-295 1018.5 647 77.9
Dinv44175 Davidia involucrata HOM05D006266 ORTHO05D008016 5.3e-295 1017.3 669 74.7
Potri.017G027500 Populus trichocarpa HOM05D006266 ORTHO05D008016 6.9e-295 1016.9 616 79.7
Ciclev10019615m.g Citrus clementina HOM05D006266 ORTHO05D008016 3.4e-294 1014.6 540 87.4
Sabra17G0016500 Salix brachista HOM05D006266 ORTHO05D008016 3.4e-294 1014.6 616 79.2
Ca_01251_v3 Cicer arietinum L. HOM05D006266 ORTHO05D008016 2.9e-293 1011.5 549 85.6
TPR.G18865 Trifolium pratense HOM05D006266 ORTHO05D008016 1.9e-292 1008.8 549 84.9
TAR362G0699 Trochodendron aralioides HOM05D006266 ORTHO05D008016 3.6e-291 1004.6 679 73.5
GSVIVG01010835001 Vitis vinifera HOM05D006266 ORTHO05D008016 1.0e-290 1003.0 537 85.5
Cfa015189 Carpinus fangiana HOM05D006266 ORTHO05D008016 1.4e-290 1002.7 548 85.9
Nn7g37595 Nelumbo nucifera HOM05D006266 ORTHO05D008016 1.8e-290 1002.3 665 75.2
Lj3g0007796 Lotus japonicus HOM05D006266 ORTHO05D008016 3.0e-290 1001.5 550 84.9
Psat5g289640 Pisum sativum HOM05D006266 ORTHO05D008016 1.1e-289 999.6 549 83.6
FvH4_4g10960 Fragaria vesca HOM05D006266 ORTHO05D008016 1.5e-289 999.2 574 80.8
CiPaw.02G052400 Carya illinoinensis HOM05D006266 ORTHO05D008016 2.6e-289 998.4 537 86.0
Lalb_Chr14g0372511 Lupinus albus HOM05D006266 ORTHO05D008016 1.7e-288 995.7 550 84.7
RcHm_v2.0_Chr4g0406421 Rosa chinensis HOM05D006266 ORTHO05D008016 4.8e-288 994.2 606 77.7
Phvul.005G153800 Phaseolus vulgaris HOM05D006266 ORTHO05D008016 6.3e-288 993.8 550 83.6
AL4G42140 Arabidopsis lyrata HOM05D006266 ORTHO05D008016 1.1e-287 993.0 577 80.4
PSO675G5931 Papaver somniferum HOM05D006266 ORTHO05D008016 1.4e-287 992.6 556 84.2
Glyma.15G029200 Glycine max HOM05D006266 ORTHO05D008016 2.4e-287 991.9 550 83.6
Sc19g0002870 Simmondsia chinensis HOM05D006266 ORTHO05D008016 2.6e-286 988.4 585 79.7
THA.LOC104805138 Tarenaya hassleriana HOM05D006266 ORTHO05D008016 7.7e-286 986.9 666 73.4
MBI07_g02893_MAGBIO Magnolia biondii HOM05D006266 ORTHO05D008016 1.0e-285 986.5 550 83.8
AT2G43400 Arabidopsis thaliana HOM05D006266 ORTHO05D008016 1.3e-285 986.1 551 83.5
Thhalv10001353m.g Eutrema salsugineum HOM05D006266 ORTHO05D008016 5.0e-285 984.2 549 82.9
Carub.0004s2587 Capsella rubella HOM05D006266 ORTHO05D008016 4.2e-284 981.1 578 79.9
Aa31LG1G25150 Aethionema arabicum HOM05D006266 ORTHO05D008016 9.4e-284 979.9 549 82.7
Sed0000993 Sechium edule HOM05D006266 ORTHO05D008016 1.2e-283 979.5 664 73.6
BcaC02g12401 Brassica carinata HOM05D006266 ORTHO05D008016 2.7e-283 978.4 669 73.4
vmacro00635 Vaccinium macrocarpon HOM05D006266 ORTHO05D008016 8.0e-283 976.9 691 70.2
VMungo1080G0961 Vigna mungo HOM05D006266 ORTHO05D008016 1.0e-282 976.5 571 80.2
BraA05t19361Z Brassica rapa HOM05D006266 ORTHO05D008016 1.4e-282 976.1 663 72.5
MD04G1042900 Malus domestica HOM05D006266 ORTHO05D008016 1.8e-282 975.7 663 73.5
ClCG05G007190 Citrullus lanatus HOM05D006266 ORTHO05D008016 2.3e-282 975.3 701 69.8
Eucgr.H00345 Eucalyptus grandis HOM05D006266 ORTHO05D008016 8.8e-282 973.4 537 83.1
C04p04440 Brassica napus HOM05D006266 ORTHO05D008016 1.5e-281 972.6 611 76.1
BolC4t22077H Brassica oleracea HOM05D006266 ORTHO05D008016 1.5e-281 972.6 611 76.1
CARHR138470 Cardamine hirsuta HOM05D006266 ORTHO05D008016 2.0e-281 972.2 577 78.7
Sp4g25480 Schrenkiella parvula HOM05D006266 ORTHO05D008016 2.0e-281 972.2 664 72.6
HanXRQChr01g0023481 Helianthus annuus HOM05D006266 ORTHO05D008016 4.4e-281 971.1 586 78.2
A05p03740 Brassica napus HOM05D006266 ORTHO05D008016 9.7e-281 969.9 659 72.8
Aqoxy2G04160 Aquilegia oxysepala HOM05D006266 ORTHO05D008016 1.4e-279 966.1 540 83.7
arahy.Tifrunner.gnm1.ann1.JU07H9 Arachis hypogaea HOM05D006266 ORTHO05D008016 5.3e-279 964.1 550 83.1
arahy.Tifrunner.gnm1.ann1.D6UD48 Arachis hypogaea HOM05D006266 ORTHO05D008016 2.0e-278 962.2 550 82.7
Hund12414 Selenicereus undatus HOM05D006266 ORTHO05D008016 7.7e-278 960.3 665 71.1
Solyc12g021170.2 Solanum lycopersicum HOM05D006266 ORTHO05D008016 2.9e-277 958.4 548 79.9
ATR0743G015 Amborella trichopoda HOM05D006266 ORTHO05D008016 1.1e-276 956.4 544 80.5
PGR142G3304 Punica granatum HOM05D006266 ORTHO05D008016 1.5e-276 956.1 641 73.5
FAN17G0658 Fragaria x ananassa HOM05D006266 ORTHO05D008016 2.5e-276 955.3 548 81.2
Actinidia27081 Actinidia chinensis HOM05D006266 ORTHO05D008016 1.0e-274 949.9 680 72.1
Sopen12g011050 Solanum pennellii HOM05D006266 ORTHO05D008016 1.0e-274 949.9 537 81.0
Migut.G01347 Erythranthe guttata HOM05D006266 ORTHO05D008016 2.0e-273 945.7 632 73.3
HPP92_022167 Vanilla planifolia HOM05D006266 ORTHO05D008016 1.3e-272 943.0 595 75.5
CDE09G1029 Ceratophyllum demersum HOM05D006266 ORTHO05D008016 6.3e-272 940.6 573 77.0
Nitab4.5_0001990g0030 Nicotiana tabacum HOM05D006266 ORTHO05D008016 7.0e-271 937.2 578 76.5
Lsat_1_v5_gn_1_77821 Lactuca sativa HOM05D006266 ORTHO05D008016 1.6e-270 936.0 638 71.3
Nitab4.5_0000505g0020 Nicotiana tabacum HOM05D006266 ORTHO05D008016 1.0e-269 933.3 549 78.3
CsaV3_3G015950 Cucumis sativus L. HOM05D006266 ORTHO05D008016 6.5e-269 930.6 629 72.3
Oeu024477.1 Olea europaea HOM05D006266 ORTHO05D008016 1.5e-268 929.5 599 73.6
Cpa.g.sc9.312 Carica papaya HOM05D006266 ORTHO05D008016 6.1e-267 924.1 679 70.5
Medtr2g099040 Medicago truncatula HOM05D006266 ORTHO05D008016 5.7e-265 917.5 499 85.0
Haze_01464 Corylus avellana HOM05D006266 ORTHO05D008016 1.3e-264 916.4 827 60.3
SGA_v2.0_scaffold17G08154 Striga asiatica HOM05D006266 ORTHO05D008016 1.6e-262 909.4 711 65.4
MSTRG.4284 Avicennia marina HOM05D006266 ORTHO05D008016 2.7e-262 908.7 634 69.4
Rhsim09G0023000 Rhododendron simsii HOM05D006266 ORTHO05D008016 1.0e-261 906.7 868 56.3
ECA248G0977 Erigeron canadensis HOM05D006266 ORTHO05D008016 1.9e-260 902.5 514 80.4
DCAR_028531 Daucus carota HOM05D006266 ORTHO05D008016 3.3e-260 901.7 549 77.0
CAN.G51.9 Capsicum annuum HOM05D006266 ORTHO05D008016 1.8e-258 896.0 559 74.4
PSO017G5469 Papaver somniferum HOM05D006266 ORTHO05D008016 2.9e-256 888.6 554 76.7
Peaxi162Scf00184g00418 Petunia axillaris HOM05D006266 ORTHO05D008016 2.3e-250 869.0 612 69.4
Dinv44151 Davidia involucrata HOM05D006266 ORTHO05D008016 8.9e-250 867.1 468 84.8
Pp3c26_13090 Physcomitrium patens HOM05D006266 ORTHO05D008016 8.3e-248 860.5 551 71.9
Hma1.2p1_0324F.1_g125550 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 4.6e-246 854.7 467 83.5
SMO141G0282 Selaginella moellendorffii HOM05D006266 ORTHO05D008016 5.0e-245 851.3 540 72.4
Lj3C32G4 Lonicera japonica HOM05D006266 ORTHO05D008016 4.7e-243 844.7 632 67.7
Lj3C1G0 Lonicera japonica HOM05D006266 ORTHO05D008016 4.0e-242 841.6 632 67.4
AUR62023848 Chenopodium quinoa HOM05D006266 ORTHO05D008016 6.8e-234 814.3 562 70.3
AagrBONN_evm.TU.Sc2ySwM_117.3933 Anthoceros agrestis HOM05D006266 ORTHO05D008016 1.3e-229 800.0 510 73.3
Hma1.2p1_0324F.1_g125560 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 3.3e-228 795.4 432 84.0
MELO3C006793.2 Cucumis melo HOM05D006266 ORTHO05D008016 1.1e-199 700.7 449 75.3
Cre02.g094300 Chlamydomonas reinhardtii HOM05D006266 ORTHO05D008016 2.1e-190 669.8 550 58.0
Mapoly0012s0124 Marchantia polymorpha HOM05D006266 ORTHO05D008016 1.0e-189 667.5 433 70.9
Cc03_g11970 Coffea canephora HOM05D006266 ORTHO05D008016 1.9e-188 663.3 369 81.0
AUR62002342 Chenopodium quinoa HOM05D006266 ORTHO05D008016 5.0e-176 622.1 441 68.7
Cfa026422 Carpinus fangiana HOM05D006266 ORTHO05D008016 3.7e-171 605.9 539 57.1
PRCOL_00003135 Prasinoderma coloniale HOM05D006266 ORTHO05D008016 4.8e-171 605.5 586 53.2
Haze_26951 Corylus avellana HOM05D006266 ORTHO05D008016 3.3e-164 582.8 559 52.2
Haze_26227 Corylus avellana HOM05D006266 ORTHO05D008016 2.2e-163 580.1 556 51.1
Zm00001eb043590 Zea mays HOM05D006266 ORTHO05D008016 4.4e-156 555.8 348 75.3
Ah.07g202330 Amaranthus hybridus HOM05D006266 ORTHO05D008016 1.8e-141 507.3 431 63.8
unitig_52.g17681 Utricularia gibba HOM05D006266 ORTHO05D008016 1.7e-123 447.6 440 55.0
SEGI_14637 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 4.7e-118 429.5 257 78.2
Ah.07g202340 Amaranthus hybridus HOM05D006266 ORTHO05D008016 4.8e-102 376.3 201 83.1
Eucgr.L02537 Eucalyptus grandis HOM05D006266 ORTHO05D008016 8.1e-102 375.6 202 83.2
FAN12G3251 Fragaria x ananassa HOM05D006266 ORTHO05D008016 3.9e-88 330.1 212 75.5
EL10Ac3g06005 Beta vulgaris HOM05D006266 ORTHO05D008016 5.1e-88 329.7 241 70.1
PGSC0003DMG400014944 Solanum tuberosum HOM05D006266 ORTHO05D008016 2.5e-79 300.8 172 77.3
Cc03_g11980 Coffea canephora HOM05D006266 ORTHO05D008016 3.4e-76 290.4 174 78.7
Sopen02g004370 Solanum pennellii HOM05D006266 ORTHO05D008016 1.0e-75 288.9 170 80.0
SEGI_11902 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 1.7e-54 218.4 150 70.0
CSS0026769 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.2e-52 212.2 119 81.5
Os10g0516300 Oryza sativa ssp. japonica HOM05D006266 ORTHO05D008016 1.1e-50 205.7 116 79.3
CSS0016449 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.9e-50 204.9 106 91.5
CSS0001057 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.7e-38 165.2 132 66.7
CSS0026763 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 9.1e-37 159.5 132 64.4
SEGI_08796 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 6.1e-33 146.7 82 79.3
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 1.8e-32 145.2 147 55.1
CSS0001558 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.2e-28 132.5 117 61.5
CSS0004821 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.2e-28 132.5 117 61.5
SEGI_29623 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 1.6e-28 132.1 74 82.4
CSS0016187 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.1e-18 99.4 78 69.2
arahy.Tifrunner.gnm1.ann1.QA6FBH Arachis hypogaea HOM05D006266 ORTHO05D008016 5.8e-15 87.0 57 77.2
Lsat_1_v5_gn_7_84681 Lactuca sativa HOM05D006266 ORTHO05D004407 2.4e-13 81.6 51 70.6
CSS0026903 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 3.5e-12 77.8 59 61.0
CSS0019028 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 6.6e-11 73.6 41 87.8
CSS0008442 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 7.3e-10 70.1 40 85.0
CSS0022444 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 7.3e-10 70.1 40 85.0
CSS0006121 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 2.8e-09 68.2 34 88.2
AUR62006021 Chenopodium quinoa HOM05D001494 ORTHO05D001364 6.2e-09 67.0 42 71.4
Sp4g25500 Schrenkiella parvula HOM05D000001 ORTHO05D000003 1.1e-08 66.2 110 39.1


User provided reference genes

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