Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G1255 Cannabis sativa HOM05D003797 ORTHO05D004370 1.5e-83 312.8 158 100.0
Psat7g007520 Pisum sativum HOM05D003797 ORTHO05D004370 4.6e-19 98.6 108 61.1
CANSAT78G0734 Cannabis sativa HOM05D003797 ORTHO05D004370 1.3e-18 97.1 72 76.4
MD16G1016600 Malus domestica HOM05D003797 ORTHO05D004370 1.3e-18 97.1 72 76.4
QL03p037712 Quercus lobata HOM05D003797 ORTHO05D004370 2.3e-18 96.3 72 75.0
Sabra10G0076600 Salix brachista HOM05D003797 ORTHO05D004370 3.0e-18 95.9 73 74.0
CiPaw.06G054700 Carya illinoinensis HOM05D003797 ORTHO05D004370 3.9e-18 95.5 71 76.1
Ciclev10016475m.g Citrus clementina HOM05D003797 ORTHO05D004370 3.9e-18 95.5 71 76.1
Dinv26370 Davidia involucrata HOM05D003797 ORTHO05D004370 3.9e-18 95.5 89 61.8
Duzib248G0263 Durio zibethinus HOM05D003797 ORTHO05D004370 3.9e-18 95.5 71 76.1
Duzib251G0134 Durio zibethinus HOM05D003797 ORTHO05D004370 3.9e-18 95.5 71 76.1
FAN07G0297 Fragaria x ananassa HOM05D003797 ORTHO05D004370 3.9e-18 95.5 72 73.6
FAN12G0353 Fragaria x ananassa HOM05D003797 ORTHO05D004370 3.9e-18 95.5 72 73.6
FAN17G2298 Fragaria x ananassa HOM05D003797 ORTHO05D004370 3.9e-18 95.5 72 73.6
FAN22G2109 Fragaria x ananassa HOM05D003797 ORTHO05D004370 3.9e-18 95.5 72 73.6
Glyma.05G240600 Glycine max HOM05D003797 ORTHO05D004370 3.9e-18 95.5 71 76.1
Glyma.08G047500 Glycine max HOM05D003797 ORTHO05D004370 3.9e-18 95.5 71 76.1
Medtr8g105790 Medicago truncatula HOM05D003797 ORTHO05D004370 3.9e-18 95.5 71 76.1
Prupe.1G335200 Prunus persica HOM05D003797 ORTHO05D004370 3.9e-18 95.5 71 76.1
RcHm_v2.0_Chr4g0442611 Rosa chinensis HOM05D003797 ORTHO05D004370 3.9e-18 95.5 72 73.6
Thecc.02G308100 Theobroma cacao HOM05D003797 ORTHO05D004370 3.9e-18 95.5 71 76.1
TPR.G19268 Trifolium pratense HOM05D003797 ORTHO05D004370 3.9e-18 95.5 71 76.1
TWI74G1086 Tripterygium wilfordii HOM05D003797 ORTHO05D004370 3.9e-18 95.5 71 76.1
arahy.Tifrunner.gnm1.ann1.2L3ISV Arachis hypogaea HOM05D003797 ORTHO05D004370 5.0e-18 95.1 87 66.7
arahy.Tifrunner.gnm1.ann1.Q36DTI Arachis hypogaea HOM05D000005 ORTHO05D004370 5.0e-18 95.1 87 66.7
Cfa015046 Carpinus fangiana HOM05D003797 ORTHO05D004370 5.0e-18 95.1 88 65.9
LjContig00081g0026703 Lotus japonicus HOM05D003797 ORTHO05D004370 5.0e-18 95.1 74 73.0
Potri.010G104200 Populus trichocarpa HOM05D003797 ORTHO05D004370 5.0e-18 95.1 71 74.6
Actinidia36612 Actinidia chinensis HOM05D003797 ORTHO05D004370 6.6e-18 94.7 89 61.8
DCAR_023568 Daucus carota HOM05D003797 ORTHO05D004370 6.6e-18 94.7 71 73.2
Atru.chr11.843 Acer truncatum HOM05D003797 ORTHO05D004370 8.6e-18 94.4 57 86.0
Atru.chr11.846 Acer truncatum HOM05D003797 ORTHO05D004370 8.6e-18 94.4 57 86.0
Atru.chr11.849 Acer truncatum HOM05D003797 ORTHO05D004370 8.6e-18 94.4 57 86.0
Ca_17254_v3 Cicer arietinum L. HOM05D003797 ORTHO05D004370 8.6e-18 94.4 71 74.6
MD13G1018700 Malus domestica HOM05D003797 ORTHO05D004370 8.6e-18 94.4 72 73.6
Nitab4.5_0002414g0010 Nicotiana tabacum HOM05D003797 ORTHO05D004370 8.6e-18 94.4 72 72.2
Nitab4.5_0003619g0020 Nicotiana tabacum HOM05D003797 ORTHO05D004370 8.6e-18 94.4 72 72.2
Phvul.002G322900 Phaseolus vulgaris HOM05D003797 ORTHO05D004370 8.6e-18 94.4 57 86.0
Solyc04g008060.3 Solanum lycopersicum HOM05D003797 ORTHO05D004370 8.6e-18 94.4 72 72.2
Sopen04g003210 Solanum pennellii HOM05D003797 ORTHO05D004370 8.6e-18 94.4 72 72.2
PGSC0003DMG400029467 Solanum tuberosum HOM05D003797 ORTHO05D004370 8.6e-18 94.4 72 72.2
VMungo0251G2898 Vigna mungo HOM05D003797 ORTHO05D004370 8.6e-18 94.4 57 86.0
AL5G10900 Arabidopsis lyrata HOM05D003797 ORTHO05D004370 1.1e-17 94.0 71 74.6
AT2G01770 Arabidopsis thaliana HOM05D003797 ORTHO05D004370 1.1e-17 94.0 71 74.6
Carub.0005s0073 Capsella rubella HOM05D003797 ORTHO05D004370 1.1e-17 94.0 71 74.6
Cc11_g06660 Coffea canephora HOM05D003797 ORTHO05D004370 1.1e-17 94.0 72 72.2
Thhalv10005591m.g Eutrema salsugineum HOM05D003797 ORTHO05D004370 1.1e-17 94.0 71 74.6
Hma1.2p1_0234F.1_g098420 Hydrangea macrophylla HOM05D003797 ORTHO05D004370 1.1e-17 94.0 86 64.0
Rhsim09G0088200 Rhododendron simsii HOM05D003797 ORTHO05D004370 1.1e-17 94.0 72 73.6
Sp2g13230 Schrenkiella parvula HOM05D003797 ORTHO05D004370 1.1e-17 94.0 71 74.6
BcaB07g30374 Brassica carinata HOM05D003797 ORTHO05D004370 1.5e-17 93.6 71 73.2
BcaC03g17074 Brassica carinata HOM05D003797 ORTHO05D004370 1.5e-17 93.6 71 73.2
A02p32320 Brassica napus HOM05D003797 ORTHO05D004370 1.5e-17 93.6 71 73.2
C02p49920 Brassica napus HOM05D003797 ORTHO05D004370 1.5e-17 93.6 71 73.2
BolC2t11071H Brassica oleracea HOM05D003797 ORTHO05D004370 1.5e-17 93.6 71 73.2
BraA02t08249Z Brassica rapa HOM05D003797 ORTHO05D004370 1.5e-17 93.6 71 73.2
BraA06t27283Z Brassica rapa HOM05D003797 ORTHO05D004370 1.5e-17 93.6 71 73.2
CSS0047498 Camellia sinensis var. sinensis HOM05D003797 ORTHO05D004370 1.5e-17 93.6 90 61.1
AUR62012750 Chenopodium quinoa HOM05D003797 ORTHO05D004370 1.5e-17 93.6 71 73.2
AUR62021908 Chenopodium quinoa HOM05D003797 ORTHO05D004370 1.5e-17 93.6 71 73.2
TAR629G0971 Trochodendron aralioides HOM05D003797 ORTHO05D004370 1.5e-17 93.6 72 70.8
Ah.09g234580 Amaranthus hybridus HOM05D003797 ORTHO05D004370 1.9e-17 93.2 71 71.8
Ah.14g087870 Amaranthus hybridus HOM05D003797 ORTHO05D004370 1.9e-17 93.2 71 71.8
EL10Ac8g20121 Beta vulgaris HOM05D003797 ORTHO05D004370 1.9e-17 93.2 71 71.8
BcaC06g31278 Brassica carinata HOM05D003797 ORTHO05D004370 1.9e-17 93.2 71 73.2
CAN.G74.19 Capsicum annuum HOM05D003797 ORTHO05D004370 1.9e-17 93.2 72 70.8
Cpa.g.sc2.168 Carica papaya HOM05D003797 ORTHO05D004370 1.9e-17 93.2 71 74.6
COL.COLO4_27615 Corchorus olitorius HOM05D003797 ORTHO05D004370 1.9e-17 93.2 87 65.5
Gohir.A13G027600 Gossypium hirsutum HOM05D003797 ORTHO05D004370 1.9e-17 93.2 71 73.2
GSVIVG01011629001 Vitis vinifera HOM05D003797 ORTHO05D004370 1.9e-17 93.2 72 70.8
CARHR144350 Cardamine hirsuta HOM05D003797 ORTHO05D004370 2.5e-17 92.8 74 70.3
ClCG01G006640 Citrullus lanatus HOM05D003797 ORTHO05D004370 2.5e-17 92.8 57 84.2
ClCG07G005420 Citrullus lanatus HOM05D003797 ORTHO05D004370 2.5e-17 92.8 72 72.2
CsaV3_5G027940 Cucumis sativus L. HOM05D003797 ORTHO05D004370 2.5e-17 92.8 57 84.2
Dinv06119 Davidia involucrata HOM05D003797 ORTHO05D004370 2.5e-17 92.8 72 70.8
Gohir.D13G026400 Gossypium hirsutum HOM05D003797 ORTHO05D004370 2.5e-17 92.8 71 71.8
Gorai.013G029700 Gossypium raimondii HOM05D003797 ORTHO05D004370 2.5e-17 92.8 71 71.8
Lalb_Chr05g0222091 Lupinus albus HOM05D003797 ORTHO05D004370 2.5e-17 92.8 71 71.8
MBI19_g09381_MAGBIO Magnolia biondii HOM05D003797 ORTHO05D004370 2.5e-17 92.8 72 69.4
Manes.15G136600 Manihot esculenta HOM05D003797 ORTHO05D004370 2.5e-17 92.8 71 73.2
Oeu006298.1 Olea europaea HOM05D003797 ORTHO05D004370 2.5e-17 92.8 72 70.8
Phvul.002G323700 Phaseolus vulgaris HOM05D003797 ORTHO05D004370 2.5e-17 92.8 57 84.2
SalBow2G0350 Salvia bowleyana HOM05D003797 ORTHO05D004370 3.3e-17 92.4 72 66.7
Aa31LG2G8120 Aethionema arabicum HOM05D003797 ORTHO05D004370 4.3e-17 92.0 87 63.2
Migut.E00497 Erythranthe guttata HOM05D003797 ORTHO05D004370 4.3e-17 92.0 72 66.7
PGR102G0637 Punica granatum HOM05D003797 ORTHO05D004370 4.3e-17 92.0 72 70.8
CsaV3_5G014530 Cucumis sativus L. HOM05D003797 ORTHO05D004370 5.6e-17 91.7 72 70.8
HanXRQChr17g0565981 Helianthus annuus HOM05D003797 ORTHO05D004370 5.6e-17 91.7 71 71.8
Lj3A863T39 Lonicera japonica HOM05D003797 ORTHO05D004370 5.6e-17 91.7 71 71.8
Sed0007838 Sechium edule HOM05D003797 ORTHO05D004370 5.6e-17 91.7 57 82.5
SGA_v2.0_scaffold23G10159 Striga asiatica HOM05D003797 ORTHO05D004370 5.6e-17 91.7 71 69.0
ECA234G4680 Erigeron canadensis HOM05D003797 ORTHO05D004370 7.3e-17 91.3 71 71.8
Oeu043982.1 Olea europaea HOM05D003797 ORTHO05D004370 7.3e-17 91.3 57 80.7
Eucgr.B02690 Eucalyptus grandis HOM05D003797 ORTHO05D004370 9.5e-17 90.9 71 71.8
Lsat_1_v5_gn_4_23500 Lactuca sativa HOM05D003797 ORTHO05D004370 9.5e-17 90.9 71 70.4
Zm00001eb312010 Zea mays HOM05D003797 ORTHO05D004370 9.5e-17 90.9 71 69.0
MSTRG.2118 Avicennia marina HOM05D003797 ORTHO05D004370 1.6e-16 90.1 71 67.6
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 1.6e-16 90.1 72 68.1
Os09g0396900 Oryza sativa ssp. japonica HOM05D003797 ORTHO05D004370 1.6e-16 90.1 71 69.0
Phvul.002G322800 Phaseolus vulgaris HOM05D003797 ORTHO05D004370 1.6e-16 90.1 71 69.0
Hund23441 Selenicereus undatus HOM05D003797 ORTHO05D004370 1.6e-16 90.1 71 67.6
HanXRQChr16g0527241 Helianthus annuus HOM05D003797 ORTHO05D004370 2.1e-16 89.7 71 70.4
Zm00001eb099150 Zea mays HOM05D003797 ORTHO05D004370 2.1e-16 89.7 57 77.2
Nn3g18415 Nelumbo nucifera HOM05D003797 ORTHO05D004370 2.8e-16 89.4 72 65.3
VMungo0251G0608 Vigna mungo HOM05D003797 ORTHO05D004370 2.8e-16 89.4 71 69.0
SHI04334 Sapria himalayana HOM05D003797 ORTHO05D004370 6.2e-16 88.2 57 78.9
THA.LOC104823632 Tarenaya hassleriana HOM05D003797 ORTHO05D004370 6.2e-16 88.2 57 77.2
Duzib268G1244 Durio zibethinus HOM05D003797 ORTHO05D004370 8.1e-16 87.8 71 69.0
Manes.17G085600 Manihot esculenta HOM05D003797 ORTHO05D004370 8.1e-16 87.8 71 69.0
Medtr8g105810 Medicago truncatula HOM05D003797 ORTHO05D004370 8.1e-16 87.8 74 64.9
HPP92_023443 Vanilla planifolia HOM05D003797 ORTHO05D004370 8.1e-16 87.8 72 65.3
Nn3g18417 Nelumbo nucifera HOM05D003797 ORTHO05D004370 1.1e-15 87.4 72 65.3
PSO675G5697 Papaver somniferum HOM05D003797 ORTHO05D004370 1.1e-15 87.4 74 66.2
PSO732G0427 Papaver somniferum HOM05D003797 ORTHO05D004370 1.1e-15 87.4 74 66.2
PSO732G0533 Papaver somniferum HOM05D003797 ORTHO05D004370 1.1e-15 87.4 74 66.2
PSO675G2134 Papaver somniferum HOM05D003797 ORTHO05D004370 1.4e-15 87.0 74 66.2
Aqoxy3G04068 Aquilegia oxysepala HOM05D003797 ORTHO05D004370 1.8e-15 86.7 71 64.8
CDE05G1216 Ceratophyllum demersum HOM05D003797 ORTHO05D004370 1.8e-15 86.7 72 65.3
unitig_22.g5605 Utricularia gibba HOM05D003797 ORTHO05D004370 1.8e-15 86.7 72 63.9
HPP92_023452 Vanilla planifolia HOM05D003797 ORTHO05D004370 2.3e-15 86.3 57 73.7
CSS0024034 Camellia sinensis var. sinensis HOM05D003797 ORTHO05D004370 3.1e-15 85.9 79 58.2
Os04g0463400 Oryza sativa ssp. japonica HOM05D003797 ORTHO05D004370 3.1e-15 85.9 71 64.8
ATR0118G024 Amborella trichopoda HOM05D003797 ORTHO05D004370 4.0e-15 85.5 71 64.8
Nn3g18418 Nelumbo nucifera HOM05D003797 ORTHO05D004370 4.0e-15 85.5 57 73.7
Potri.010G104100 Populus trichocarpa HOM05D003797 ORTHO05D004370 4.0e-15 85.5 71 67.6
SEGI_33821 Sequoiadendron giganteum HOM05D003797 ORTHO05D004370 4.0e-15 85.5 71 64.8
unitig_8.g4013 Utricularia gibba HOM05D003797 ORTHO05D004370 5.2e-15 85.1 72 62.5
GSVIVG01011628001 Vitis vinifera HOM05D003797 ORTHO05D004370 5.2e-15 85.1 72 63.9
Dinv00922 Davidia involucrata HOM05D003797 ORTHO05D004370 1.2e-14 84.0 72 65.3
Dinv03968 Davidia involucrata HOM05D003797 ORTHO05D004370 1.2e-14 84.0 72 65.3
Pp3c2_34540 Physcomitrium patens HOM05D003797 ORTHO05D004370 1.5e-14 83.6 76 59.2
Ciclev10017583m.g Citrus clementina HOM05D003797 ORTHO05D004370 2.0e-14 83.2 72 62.5
unitig_27.g25168 Utricularia gibba HOM05D003797 ORTHO05D004370 2.0e-14 83.2 72 61.1
Mapoly0116s0023 Marchantia polymorpha HOM05D003797 ORTHO05D004370 2.6e-14 82.8 71 64.8
MELO3C005260.2 Cucumis melo HOM05D003797 ORTHO05D004370 3.4e-14 82.4 72 62.5
CsaV3_5G027930 Cucumis sativus L. HOM05D003797 ORTHO05D004370 3.4e-14 82.4 72 62.5
CANSAT78G1947 Cannabis sativa HOM05D003797 ORTHO05D004370 4.4e-14 82.0 72 62.5
FvH4_4g33340 Fragaria vesca HOM05D003797 ORTHO05D004370 4.4e-14 82.0 72 62.5
Prupe.1G335300 Prunus persica HOM05D003797 ORTHO05D004370 4.4e-14 82.0 72 62.5
PGR142G2609 Punica granatum HOM05D003797 ORTHO05D004370 4.4e-14 82.0 71 62.0
FAN12G2011 Fragaria x ananassa HOM05D003797 ORTHO05D004370 5.8e-14 81.6 71 63.4
Sed0023787 Sechium edule HOM05D003797 ORTHO05D004370 5.8e-14 81.6 72 61.1
FAN07G2428 Fragaria x ananassa HOM05D003797 ORTHO05D004370 7.5e-14 81.3 71 63.4
FAN17G0483 Fragaria x ananassa HOM05D003797 ORTHO05D004370 7.5e-14 81.3 71 63.4
MD16G1016500 Malus domestica HOM05D003797 ORTHO05D004370 7.5e-14 81.3 71 63.4
RcHm_v2.0_Chr4g0442571 Rosa chinensis HOM05D003797 ORTHO05D004370 7.5e-14 81.3 71 63.4
RcHm_v2.0_Chr4g0442581 Rosa chinensis HOM05D003797 ORTHO05D004370 7.5e-14 81.3 71 63.4
FAN22G0305 Fragaria x ananassa HOM05D003797 ORTHO05D004370 9.8e-14 80.9 71 63.4
AagrBONN_evm.TU.Sc2ySwM_228.2367 Anthoceros agrestis HOM05D003797 ORTHO05D004370 1.3e-13 80.5 71 60.6
CiPaw.06G054800 Carya illinoinensis HOM05D003797 ORTHO05D004370 1.3e-13 80.5 71 63.4
Atru.chr11.837 Acer truncatum HOM05D003797 ORTHO05D004370 1.7e-13 80.1 72 61.1
Haze_10850 Corylus avellana HOM05D003797 ORTHO05D004370 2.2e-13 79.7 57 71.9
Eucgr.G02084 Eucalyptus grandis HOM05D003797 ORTHO05D004370 2.2e-13 79.7 71 60.6
QL03p037918 Quercus lobata HOM05D003797 ORTHO05D004370 2.2e-13 79.7 71 62.0
Thecc.02G307900 Theobroma cacao HOM05D003797 ORTHO05D004370 1.1e-12 77.4 57 64.9
Eucgr.B02691 Eucalyptus grandis HOM05D003797 ORTHO05D004370 1.4e-12 77.0 71 60.6
SMO169G0175 Selaginella moellendorffii HOM05D003797 ORTHO05D004370 1.9e-12 76.6 71 59.2
Duzib251G0065 Durio zibethinus HOM05D003797 ORTHO05D004370 9.2e-12 74.3 57 63.2
COL.COLO4_27614 Corchorus olitorius HOM05D003797 ORTHO05D004370 1.7e-10 70.1 56 58.9
PSO384G3089 Papaver somniferum HOM05D003797 ORTHO05D004370 6.6e-10 68.2 73 53.4
unitig_52.g17091 Utricularia gibba HOM05D003797 ORTHO05D004370 1.5e-09 67.0 80 48.8
PSO339G4314 Papaver somniferum HOM05D003797 ORTHO05D004370 2.5e-09 66.2 58 58.6
SEGI_39927 Sequoiadendron giganteum HOM05D003797 ORTHO05D004370 9.5e-09 64.3 57 56.1
Hma1.2p1_1538F.1_g289560 Hydrangea macrophylla HOM05D003797 ORTHO05D004370 2.8e-08 62.8 58 56.9
VMungo0540G0471 Vigna mungo HOM05D003797 ORTHO05D437409 4.7e-08 62.0 103 43.7


User provided reference genes

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