Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 2.0e-121 439.1 225 100.0
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 6.6e-88 327.8 226 79.6
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 4.3e-87 325.1 225 78.7
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.6e-86 323.2 227 78.4
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 3.6e-86 322.0 225 77.3
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 3.6e-86 322.0 226 78.3
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 4.7e-86 321.6 227 78.4
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 1.1e-85 320.5 227 78.0
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 3.1e-85 318.9 229 78.2
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 8.9e-85 317.4 226 76.5
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 8.9e-85 317.4 226 79.2
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 2.6e-84 315.8 227 75.8
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 3.4e-84 315.5 226 76.1
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.4e-84 315.5 226 76.1
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 3.4e-84 315.5 225 77.3
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 9.8e-84 313.9 225 75.6
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 9.8e-84 313.9 225 75.6
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 9.8e-84 313.9 225 76.4
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.3e-83 313.5 226 75.7
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.3e-83 313.5 226 75.7
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 1.3e-83 313.5 226 76.5
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 2.9e-83 312.4 225 74.7
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 2.9e-83 312.4 225 75.6
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 3.7e-83 312.0 225 76.4
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 3.7e-83 312.0 226 77.4
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 3.7e-83 312.0 225 76.4
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 4.9e-83 311.6 225 76.4
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 6.4e-83 311.2 226 75.2
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 6.4e-83 311.2 226 74.8
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.1e-82 310.5 226 75.2
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 1.1e-82 310.5 224 75.4
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 1.4e-82 310.1 225 76.0
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 1.4e-82 310.1 229 75.1
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 2.4e-82 309.3 226 77.0
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 2.4e-82 309.3 225 73.8
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 3.2e-82 308.9 227 75.3
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 3.2e-82 308.9 224 76.3
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 4.1e-82 308.5 225 77.3
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 4.1e-82 308.5 225 75.1
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 4.1e-82 308.5 228 74.6
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 4.1e-82 308.5 225 76.0
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 5.4e-82 308.1 225 75.1
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 1.2e-81 307.0 227 75.8
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.2e-81 307.0 224 75.9
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.2e-81 307.0 223 76.7
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.6e-81 306.6 225 75.6
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 2.1e-81 306.2 224 75.0
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 7.8e-81 304.3 228 73.2
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 7.8e-81 304.3 229 73.4
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 7.8e-81 304.3 225 74.7
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 1.3e-80 303.5 223 74.4
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.3e-80 303.5 224 75.0
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 1.7e-80 303.1 225 74.2
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.7e-80 303.1 225 76.0
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.7e-80 303.1 223 74.4
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 2.3e-80 302.8 225 74.7
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 2.3e-80 302.8 225 73.8
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 3.9e-80 302.0 225 72.9
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 3.9e-80 302.0 225 75.1
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 3.9e-80 302.0 225 76.4
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 5.1e-80 301.6 224 73.7
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 5.1e-80 301.6 226 72.6
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 6.6e-80 301.2 199 78.4
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 6.6e-80 301.2 225 72.0
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 8.6e-80 300.8 227 72.2
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.1e-79 300.4 225 75.6
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 1.5e-79 300.1 232 73.3
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 1.5e-79 300.1 210 74.3
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.5e-79 300.1 227 73.6
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 1.5e-79 300.1 229 72.1
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.5e-79 300.1 225 73.8
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 1.9e-79 299.7 225 73.8
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 1.9e-79 299.7 225 73.8
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 3.3e-79 298.9 225 72.0
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 4.3e-79 298.5 162 90.1
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 5.6e-79 298.1 229 71.6
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 7.3e-79 297.7 225 71.6
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 7.3e-79 297.7 223 74.0
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 9.5e-79 297.4 162 90.7
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 9.5e-79 297.4 225 71.6
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 9.5e-79 297.4 196 79.6
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.6e-78 296.6 225 72.0
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 1.6e-78 296.6 145 97.9
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.6e-78 296.6 162 88.9
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 1.6e-78 296.6 221 75.1
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 1.6e-78 296.6 222 71.6
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 2.1e-78 296.2 224 71.9
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 2.8e-78 295.8 225 72.4
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 3.6e-78 295.4 180 83.9
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 3.6e-78 295.4 180 83.9
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.6e-78 295.4 225 72.0
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 4.7e-78 295.0 179 83.8
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 4.7e-78 295.0 179 83.8
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 8.1e-78 294.3 167 86.8
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 1.1e-77 293.9 225 71.6
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 1.4e-77 293.5 150 93.3
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 1.4e-77 293.5 165 88.5
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 1.4e-77 293.5 225 74.2
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.8e-77 293.1 200 76.0
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 2.3e-77 292.7 224 69.6
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 4.0e-77 292.0 200 76.0
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 5.2e-77 291.6 226 73.5
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 5.2e-77 291.6 228 71.1
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 6.8e-77 291.2 225 72.9
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 6.8e-77 291.2 173 83.8
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.2e-76 290.4 206 73.3
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 1.2e-76 290.4 224 72.3
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 1.5e-76 290.0 225 70.7
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 1.5e-76 290.0 227 69.6
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 2.0e-76 289.7 201 75.1
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 2.0e-76 289.7 206 75.7
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 2.6e-76 289.3 227 71.4
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 3.4e-76 288.9 205 74.6
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 4.4e-76 288.5 225 72.0
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 5.8e-76 288.1 214 73.8
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 5.8e-76 288.1 214 73.8
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 7.6e-76 287.7 213 73.2
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.3e-75 287.0 213 72.8
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 1.7e-75 286.6 190 78.4
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.4e-74 283.5 227 69.2
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 1.3e-72 276.9 225 69.3
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 6.6e-72 274.6 224 69.2
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 7.3e-71 271.2 151 86.1
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 9.6e-71 270.8 206 73.8
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.6e-70 268.9 215 72.6
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 8.1e-70 267.7 151 84.8
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 1.4e-69 266.9 146 86.3
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.4e-69 266.2 225 69.3
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.4e-69 266.2 225 69.3
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 6.8e-69 264.6 147 85.7
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.5e-68 263.5 180 74.4
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 2.0e-68 263.1 216 68.5
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 2.9e-67 259.2 223 69.1
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 2.9e-67 259.2 189 74.6
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 6.4e-67 258.1 203 71.9
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 8.4e-67 257.7 194 69.6
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.2e-66 255.8 225 65.3
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 5.4e-66 255.0 223 64.1
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 7.8e-65 251.1 199 72.9
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 2.5e-63 246.1 195 69.2
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 2.1e-62 243.0 228 64.9
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 7.6e-60 234.6 225 60.9
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 7.6e-60 234.6 143 79.0
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 3.8e-59 232.3 133 84.2
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 6.0e-57 224.9 152 73.0
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 2.3e-56 223.0 204 61.8
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.9e-50 203.4 226 58.4
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.1e-46 189.9 227 55.9
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.8e-40 170.2 92 88.0
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 3.1e-37 159.5 223 50.2
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 6.7e-32 141.7 75 90.7
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 4.8e-14 82.4 122 45.1
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 6.3e-14 82.0 122 45.9
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 5.3e-13 79.0 122 45.1
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 1.7e-11 73.9 96 47.9


User provided reference genes

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