Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 2.6e-167 592.0 310 100.0
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 1.4e-120 436.8 310 72.6
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 2.0e-119 433.0 310 72.6
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 1.3e-118 430.3 310 74.5
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.1e-117 427.2 308 73.1
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.9e-117 426.4 310 71.3
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.9e-117 426.4 310 71.3
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 1.9e-117 426.4 310 71.3
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 2.4e-117 426.0 311 72.7
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 3.2e-117 425.6 316 72.2
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 5.5e-117 424.9 310 72.3
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 2.7e-116 422.5 313 73.2
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.0e-115 420.6 314 72.0
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 6.7e-115 417.9 313 72.5
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 6.7e-115 417.9 330 68.2
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 1.1e-114 417.2 312 71.5
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 1.6e-113 413.3 313 69.6
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.8e-113 412.5 314 68.8
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 2.4e-112 409.5 317 70.0
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 3.1e-112 409.1 314 69.1
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 3.1e-112 409.1 314 68.8
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 1.2e-111 407.1 277 74.4
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 4.5e-111 405.2 318 67.0
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 5.8e-111 404.8 312 70.5
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 1.0e-110 404.1 302 71.9
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 1.1e-109 400.6 310 71.6
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 9.3e-109 397.5 309 68.6
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 2.7e-108 396.0 309 70.6
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 4.6e-108 395.2 301 68.1
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 1.0e-107 394.0 311 68.8
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 1.3e-107 393.7 311 68.8
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 2.3e-107 392.9 260 77.3
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 2.3e-107 392.9 272 73.9
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 8.7e-107 391.0 309 65.7
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 1.1e-106 390.6 310 68.7
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 1.1e-106 390.6 294 69.7
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 1.1e-106 390.6 310 67.7
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.9e-106 389.8 311 67.8
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 3.3e-106 389.0 311 66.6
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 5.7e-106 388.3 261 74.3
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 5.7e-106 388.3 255 74.1
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 5.7e-106 388.3 281 70.1
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 2.8e-105 386.0 272 72.1
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 2.8e-105 386.0 303 67.3
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 6.3e-105 384.8 306 68.3
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 3.1e-104 382.5 268 70.9
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.2e-103 380.6 316 64.9
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.2e-103 380.6 316 64.9
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 2.0e-103 379.8 320 65.9
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 7.6e-103 377.9 301 67.4
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 1.0e-102 377.5 272 71.0
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 1.0e-102 377.5 299 67.6
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 2.9e-102 375.9 291 66.3
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 1.1e-101 374.0 306 64.1
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 4.2e-101 372.1 319 64.9
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 1.6e-100 370.2 253 70.4
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 3.6e-100 369.0 310 62.9
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 4.6e-100 368.6 310 63.9
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 1.3e-99 367.1 310 62.9
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 1.8e-99 366.7 316 60.8
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.3e-99 366.3 310 62.6
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 2.3e-99 366.3 316 60.4
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 2.3e-99 366.3 304 63.5
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 3.9e-99 365.5 253 71.1
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 5.1e-99 365.2 307 64.5
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 6.7e-99 364.8 295 65.8
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 8.7e-99 364.4 280 67.1
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.9e-98 363.2 310 62.9
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 4.3e-98 362.1 236 74.2
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 1.7e-97 360.1 257 69.3
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 1.7e-97 360.1 322 59.6
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 2.2e-97 359.8 265 69.8
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 6.3e-97 358.2 263 67.7
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.1e-96 357.5 275 66.5
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 2.4e-96 356.3 304 61.2
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 2.4e-96 356.3 304 61.2
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 3.1e-96 355.9 311 61.7
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 3.1e-96 355.9 244 71.7
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 5.3e-96 355.1 309 61.2
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 5.3e-96 355.1 311 61.4
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 9.1e-96 354.4 310 61.9
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 9.1e-96 354.4 311 61.4
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 9.1e-96 354.4 311 61.4
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 9.1e-96 354.4 313 62.0
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 1.2e-95 354.0 301 61.1
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.5e-95 353.6 270 69.6
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.0e-95 353.2 317 60.6
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 2.6e-95 352.8 304 60.9
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 3.4e-95 352.4 314 59.2
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 3.4e-95 352.4 311 62.7
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 5.9e-95 351.7 258 70.5
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 1.0e-94 350.9 304 61.5
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 1.0e-94 350.9 284 68.3
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 2.2e-94 349.7 306 60.5
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 2.2e-94 349.7 313 60.7
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 2.9e-94 349.4 236 69.5
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 3.8e-94 349.0 292 64.0
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 5.0e-94 348.6 312 61.2
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 8.5e-94 347.8 292 63.4
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 4.2e-93 345.5 312 63.1
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 5.5e-93 345.1 292 63.4
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 1.2e-92 344.0 284 60.6
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.2e-92 344.0 297 59.3
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.1e-92 343.2 326 60.7
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 2.1e-92 343.2 224 78.1
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 7.9e-92 341.3 236 69.5
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 5.1e-91 338.6 247 69.2
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 8.8e-91 337.8 366 53.3
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 5.7e-90 335.1 282 61.3
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 5.7e-90 335.1 312 59.0
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 9.7e-90 334.3 306 59.5
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.1e-88 329.3 309 57.0
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 2.0e-87 326.6 232 72.0
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 4.5e-87 325.5 252 62.3
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 5.9e-87 325.1 338 53.0
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 1.0e-86 324.3 265 61.1
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 3.8e-86 322.4 298 57.7
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 5.0e-86 322.0 265 60.4
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.5e-85 319.7 386 51.3
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.2e-85 319.3 383 51.7
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.1e-84 316.6 320 55.9
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 2.3e-83 313.2 246 60.6
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.1e-82 310.8 254 62.2
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 1.4e-80 303.9 240 60.4
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 7.0e-80 301.6 311 55.3
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 2.0e-79 300.1 292 56.8
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 1.7e-78 297.0 240 62.5
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 2.9e-78 296.2 312 53.8
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 1.1e-77 294.3 260 62.7
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 8.0e-76 288.1 402 44.8
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 3.0e-75 286.2 227 63.9
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 5.2e-67 258.8 222 59.9
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.6e-63 247.3 314 43.6
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 5.9e-63 245.4 194 71.6
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 9.5e-61 238.0 167 66.5
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 1.0e-59 234.6 232 47.8
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 8.9e-59 231.5 223 56.5
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 3.4e-58 229.6 240 51.7
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 3.5e-55 219.5 461 34.5
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 4.3e-53 212.6 226 48.2
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 3.6e-52 209.5 229 45.4
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 4.0e-51 206.1 143 67.8
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 2.0e-50 203.8 137 73.0
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 3.7e-49 199.5 314 41.7
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 6.2e-44 182.2 189 48.1
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 2.2e-41 173.7 124 69.4
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 8.1e-28 128.6 118 52.5
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 6.6e-22 109.0 115 55.7
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 7.3e-21 105.5 79 64.6
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 2.8e-20 103.6 107 43.9
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 2.2e-17 94.0 70 65.7
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.9e-14 83.2 72 56.9
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 7.3e-13 79.0 71 46.5
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 3.6e-12 76.6 184 34.2
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 4.5e-10 69.7 51 64.7
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 6.4e-09 65.9 50 70.0
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 4.6e-07 59.7 209 26.8
FAN14G4716 Fragaria x ananassa HOM05D004474 ORTHO05D210276 6.0e-07 59.3 41 63.4
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 1.3e-06 58.2 103 37.9
CANSAT21G1663 Cannabis sativa HOM05D002234 ORTHO05D002254 1.3e-06 58.2 242 25.6
ATR0624G044 Amborella trichopoda HOM05D002234 ORTHO05D002254 5.1e-06 56.2 216 25.9
GSVIVG01013072001 Vitis vinifera HOM05D002234 ORTHO05D002254 5.1e-06 56.2 257 25.7
ECA246G1777 Erigeron canadensis HOM05D002234 ORTHO05D002254 6.7e-06 55.8 216 24.5
SMO367G0795 Selaginella moellendorffii HOM05D002234 ORTHO05D002254 6.7e-06 55.8 252 25.8
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 8.7e-06 55.5 103 35.0
vmacro14194 Vaccinium macrocarpon HOM05D002234 ORTHO05D002254 8.7e-06 55.5 248 25.8


User provided reference genes

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