Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 6.6e-162 573.9 282 100.0
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 3.8e-93 345.5 243 70.8
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 1.1e-92 344.0 190 84.7
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 5.5e-92 341.7 249 68.3
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 7.2e-92 341.3 186 85.5
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 1.6e-91 340.1 186 86.0
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 2.7e-91 339.3 185 84.9
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 3.6e-91 339.0 255 66.7
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 3.6e-91 339.0 255 66.7
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 6.1e-91 338.2 190 83.2
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 8.0e-91 337.8 186 83.9
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 1.0e-90 337.4 190 83.7
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 1.4e-90 337.0 185 84.3
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 1.8e-90 336.7 248 68.1
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 3.0e-90 335.9 186 82.3
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 3.0e-90 335.9 186 82.8
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 3.0e-90 335.9 247 68.4
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 4.0e-90 335.5 185 83.8
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 4.0e-90 335.5 186 85.5
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 5.2e-90 335.1 186 82.8
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 6.8e-90 334.7 252 68.3
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.5e-89 333.6 186 82.8
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 2.6e-89 332.8 185 84.3
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 2.6e-89 332.8 185 83.8
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 2.6e-89 332.8 186 82.3
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 2.6e-89 332.8 252 67.5
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 2.6e-89 332.8 189 82.5
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 2.6e-89 332.8 185 82.7
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 2.6e-89 332.8 186 83.3
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 3.4e-89 332.4 186 82.3
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 3.4e-89 332.4 185 83.8
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 4.4e-89 332.0 186 82.8
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 5.7e-89 331.6 186 81.2
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 5.7e-89 331.6 179 86.6
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 9.8e-89 330.9 252 67.1
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 1.3e-88 330.5 186 81.7
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 1.3e-88 330.5 189 79.4
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 1.3e-88 330.5 189 79.4
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 1.3e-88 330.5 185 80.0
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 1.3e-88 330.5 186 82.3
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 1.3e-88 330.5 186 81.7
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 1.3e-88 330.5 190 81.1
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 1.7e-88 330.1 189 79.4
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 1.7e-88 330.1 186 81.2
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 1.7e-88 330.1 185 81.6
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 2.2e-88 329.7 186 80.6
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 2.2e-88 329.7 186 81.7
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 2.2e-88 329.7 186 81.2
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 2.8e-88 329.3 186 80.6
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 2.8e-88 329.3 189 80.4
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 3.7e-88 328.9 189 78.8
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 3.7e-88 328.9 189 79.4
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 4.8e-88 328.6 189 78.8
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.8e-88 328.6 199 79.9
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 4.8e-88 328.6 189 80.4
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 6.3e-88 328.2 189 79.4
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 1.1e-87 327.4 185 82.7
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 1.8e-87 326.6 250 64.8
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 3.1e-87 325.9 250 64.4
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 9.1e-87 324.3 194 77.3
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 9.1e-87 324.3 185 81.6
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.2e-86 323.9 189 79.4
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 2.0e-86 323.2 189 77.8
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 2.0e-86 323.2 189 77.8
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 2.0e-86 323.2 186 81.2
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 2.7e-86 322.8 186 80.1
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 2.7e-86 322.8 186 79.6
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 5.9e-86 321.6 185 80.0
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 5.9e-86 321.6 186 79.0
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 5.9e-86 321.6 186 81.2
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 5.9e-86 321.6 186 81.2
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 7.7e-86 321.2 189 77.2
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 1.0e-85 320.9 190 79.5
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 1.3e-85 320.5 189 76.7
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 1.3e-85 320.5 189 76.7
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 1.7e-85 320.1 189 76.7
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 1.7e-85 320.1 189 77.2
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 2.9e-85 319.3 186 79.0
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 3.8e-85 318.9 186 78.5
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 3.8e-85 318.9 186 79.6
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 5.0e-85 318.5 189 76.2
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 1.9e-84 316.6 189 77.2
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 2.5e-84 316.2 185 78.9
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 5.5e-84 315.1 186 76.9
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 5.5e-84 315.1 185 78.9
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 7.2e-84 314.7 190 76.3
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 1.6e-83 313.5 186 77.4
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 3.6e-83 312.4 184 78.3
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 8.0e-83 311.2 185 77.3
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 8.0e-83 311.2 185 78.9
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 1.4e-82 310.5 185 78.9
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 3.0e-82 309.3 184 76.6
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 1.2e-81 307.4 185 76.8
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 1.2e-81 307.4 185 76.2
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 1.2e-81 307.4 185 76.8
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.5e-81 307.0 189 75.1
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 2.0e-81 306.6 186 80.1
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 2.2e-80 303.1 195 72.8
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 2.2e-80 303.1 186 74.7
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 1.1e-76 290.8 175 78.3
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 4.2e-76 288.9 163 80.4
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 1.1e-71 274.2 152 83.6
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 5.0e-69 265.4 185 62.7
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 8.6e-69 264.6 185 61.6
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 3.6e-67 259.2 189 59.8
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 4.7e-67 258.8 189 60.8
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.2e-65 254.2 185 61.6
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 2.9e-64 249.6 141 83.0
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 3.5e-62 242.7 185 65.4
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 8.6e-61 238.0 141 79.4
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 5.6e-60 235.3 145 76.6
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 9.5e-60 234.6 139 79.9
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 3.1e-58 229.6 179 60.3
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 4.0e-50 202.6 155 63.9
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 5.8e-49 198.7 118 78.8
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 1.3e-48 197.6 116 79.3
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.1e-47 194.5 116 79.3
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 4.6e-46 189.1 203 52.2
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 1.5e-44 184.1 211 49.3
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 9.9e-41 171.4 83 100.0
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 2.2e-40 170.2 86 95.3
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 1.0e-37 161.4 145 55.9
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 3.1e-34 149.8 82 81.7
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 6.9e-34 148.7 83 83.1
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 8.4e-32 141.7 173 37.6
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 6.0e-30 135.6 71 85.9
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 8.7e-29 131.7 115 57.4
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 9.9e-25 118.2 198 29.3
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 4.3e-20 102.8 128 46.1
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.3e-19 101.3 114 49.1
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 5.8e-17 92.4 49 83.7
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 1.9e-15 87.4 45 84.4
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 1.2e-14 84.7 196 27.6


User provided reference genes

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