Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT64G0294 Cannabis sativa HOM05D007617 ORTHO05D007195 3.3e-66 255.0 135 100.0
QL02p073546 Quercus lobata HOM05D007617 ORTHO05D007195 3.2e-21 105.5 141 49.6
CiPaw.03G047400 Carya illinoinensis HOM05D007617 ORTHO05D007195 3.3e-18 95.5 142 48.6
CiPaw.09G026700 Carya illinoinensis HOM05D007617 ORTHO05D007195 3.3e-18 95.5 142 48.6
Prupe.3G296000 Prunus persica HOM05D007617 ORTHO05D007195 1.6e-17 93.2 140 46.4
TAR374G0075 Trochodendron aralioides HOM05D007617 ORTHO05D007195 8.1e-17 90.9 147 43.5
Sed0018064 Sechium edule HOM05D007617 ORTHO05D007195 1.4e-16 90.1 140 44.3
Lj2g0010313 Lotus japonicus HOM05D007617 ORTHO05D007195 4.0e-16 88.6 141 46.8
Atru.chr6.2453 Acer truncatum HOM05D007617 ORTHO05D007195 6.9e-16 87.8 141 45.4
Aqoxy5G03650 Aquilegia oxysepala HOM05D007617 ORTHO05D007195 4.5e-15 85.1 153 41.8
TPR.G31739 Trifolium pratense HOM05D007617 ORTHO05D007195 9.9e-15 84.0 143 37.8
Ciclev10017789m.g Citrus clementina HOM05D007617 ORTHO05D007195 1.7e-14 83.2 146 42.5
Potri.012G090700 Populus trichocarpa HOM05D007617 ORTHO05D007195 1.7e-14 83.2 142 42.3
vmacro18302 Vaccinium macrocarpon HOM05D007617 ORTHO05D007195 1.7e-14 83.2 140 41.4
Ciclev10022896m.g Citrus clementina HOM05D007617 ORTHO05D007195 2.9e-14 82.4 143 42.7
DCAR_011273 Daucus carota HOM05D007617 ORTHO05D007195 2.9e-14 82.4 140 43.6
Glyma.05G114700 Glycine max HOM05D007617 ORTHO05D007195 3.8e-14 82.0 143 46.9
Phvul.004G059700 Phaseolus vulgaris HOM05D007617 ORTHO05D007195 3.8e-14 82.0 139 46.0
Medtr1g093790 Medicago truncatula HOM05D007617 ORTHO05D007195 6.4e-14 81.3 143 38.5
Hma1.2p1_0818F.1_g223400 Hydrangea macrophylla HOM05D007617 ORTHO05D007195 8.4e-14 80.9 141 44.0
Ca_11155_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 1.1e-13 80.5 136 40.4
Ca_11158_v3 Cicer arietinum L. HOM05D007617 ORTHO05D007195 1.1e-13 80.5 136 40.4
Lalb_Chr21g0317701 Lupinus albus HOM05D007617 ORTHO05D007195 1.1e-13 80.5 141 41.1
Glyma.19G053100 Glycine max HOM05D007617 ORTHO05D007195 1.9e-13 79.7 137 48.9
VMungo0464G0279 Vigna mungo HOM05D007617 ORTHO05D007195 3.2e-13 79.0 139 45.3
Psat6g179560 Pisum sativum HOM05D007617 ORTHO05D007195 9.3e-13 77.4 143 37.1
Manes.06G112400 Manihot esculenta HOM05D007617 ORTHO05D007195 2.1e-12 76.3 67 64.2
Haze_14778 Corylus avellana HOM05D007617 ORTHO05D007195 3.5e-12 75.5 136 42.6
Cfa007314 Carpinus fangiana HOM05D000615 ORTHO05D007195 4.6e-12 75.1 144 43.8
Lalb_Chr02g0158101 Lupinus albus HOM05D007617 ORTHO05D007195 6.0e-12 74.7 144 40.3
RcHm_v2.0_Chr7g0191931 Rosa chinensis HOM05D007617 ORTHO05D007195 6.0e-12 74.7 142 43.7
FvH4_5g06710 Fragaria vesca HOM05D007617 ORTHO05D007195 7.9e-12 74.3 139 39.6
TAR371G0337 Trochodendron aralioides HOM05D007617 ORTHO05D007195 1.0e-11 73.9 146 41.8
FAN08G2040 Fragaria x ananassa HOM05D007617 ORTHO05D007195 1.3e-11 73.6 139 39.6
Manes.14G057300 Manihot esculenta HOM05D007617 ORTHO05D007195 1.8e-11 73.2 144 40.3
Sopen02g038090 Solanum pennellii HOM05D007617 ORTHO05D007195 1.8e-11 73.2 75 57.3
FAN18G3066 Fragaria x ananassa HOM05D007617 ORTHO05D007195 2.3e-11 72.8 139 39.6
PGSC0003DMG400012616 Solanum tuberosum HOM05D007617 ORTHO05D007195 2.3e-11 72.8 122 42.6
FAN13G2538 Fragaria x ananassa HOM05D007617 ORTHO05D007195 8.7e-11 70.9 139 41.0
Gohir.D07G059400 Gossypium hirsutum HOM05D011792 ORTHO05D007195 1.5e-10 70.1 148 38.5
Sopen02g017030 Solanum pennellii HOM05D007617 ORTHO05D007195 2.5e-10 69.3 141 40.4
Nn3g16639 Nelumbo nucifera HOM05D007617 ORTHO05D007195 3.3e-10 68.9 145 40.0
Sed0015223 Sechium edule HOM05D007617 ORTHO05D007195 3.3e-10 68.9 143 38.5
Solyc02g067910.1 Solanum lycopersicum HOM05D007617 ORTHO05D007195 3.3e-10 68.9 141 39.7
Nitab4.5_0000040g0620 Nicotiana tabacum HOM05D007617 ORTHO05D007195 4.3e-10 68.6 65 64.6
Nitab4.5_0004496g0030 Nicotiana tabacum HOM05D007617 ORTHO05D007195 4.3e-10 68.6 65 63.1
Carub.0008s2391 Capsella rubella HOM05D010525 ORTHO05D007195 5.6e-10 68.2 85 49.4
ClCG05G013140 Citrullus lanatus HOM05D007617 ORTHO05D007195 5.6e-10 68.2 128 40.6
Gorai.001G062900 Gossypium raimondii HOM05D011792 ORTHO05D007195 5.6e-10 68.2 148 38.5
MD06G1161600 Malus domestica HOM05D007617 ORTHO05D007195 7.4e-10 67.8 148 35.8
Thecc.03G118700 Theobroma cacao HOM05D011792 ORTHO05D007195 9.6e-10 67.4 149 35.6
CAN.G1057.14 Capsicum annuum HOM05D007617 ORTHO05D007195 1.6e-09 66.6 68 57.4
Gohir.A07G055100 Gossypium hirsutum HOM05D011792 ORTHO05D007195 1.6e-09 66.6 148 37.2
PGSC0003DMG400006919 Solanum tuberosum HOM05D007617 ORTHO05D007195 3.7e-09 65.5 79 53.2
Migut.K00629 Erythranthe guttata HOM05D007617 ORTHO05D007195 4.8e-09 65.1 148 41.9
Nn4g22527 Nelumbo nucifera HOM05D007617 ORTHO05D007195 4.8e-09 65.1 148 39.9
Oeu050454.1 Olea europaea HOM05D007617 ORTHO05D007195 4.8e-09 65.1 90 48.9
Rhsim08G0047600 Rhododendron simsii HOM05D007617 ORTHO05D007195 4.8e-09 65.1 138 37.7
FAN04G0785 Fragaria x ananassa HOM05D007617 ORTHO05D007195 6.2e-09 64.7 139 37.4
ATR1145G009 Amborella trichopoda HOM05D007617 ORTHO05D007195 1.1e-08 63.9 73 53.4
Oeu023836.1 Olea europaea HOM05D007617 ORTHO05D007195 1.8e-08 63.2 122 44.3
Oeu054643.1 Olea europaea HOM05D007617 ORTHO05D007195 1.8e-08 63.2 141 37.6
MELO3C014838.2 Cucumis melo HOM05D007617 ORTHO05D007195 2.4e-08 62.8 142 36.6
PGR142G0897 Punica granatum HOM05D007617 ORTHO05D007195 2.4e-08 62.8 66 57.6
A06p19360 Brassica napus HOM05D010525 ORTHO05D007195 3.1e-08 62.4 135 34.1
Lsat_1_v5_gn_2_91001 Lactuca sativa HOM05D007617 ORTHO05D007195 3.1e-08 62.4 142 37.3
CiPaw.11G014400 Carya illinoinensis HOM05D007617 ORTHO05D007195 4.0e-08 62.0 143 37.8
Nitab4.5_0014774g0010 Nicotiana tabacum HOM05D007617 ORTHO05D007195 4.0e-08 62.0 142 38.0
Potri.001G340100 Populus trichocarpa HOM05D007617 ORTHO05D007195 4.0e-08 62.0 139 39.6
Prupe.5G161500 Prunus persica HOM05D007617 ORTHO05D007195 4.0e-08 62.0 148 35.1
SGA_v2.0_scaffold47G17524 Striga asiatica HOM05D007617 ORTHO05D007195 5.3e-08 61.6 131 40.5
MSTRG.549 Avicennia marina HOM05D007617 ORTHO05D007195 6.9e-08 61.2 147 38.8
BraA06t25018Z Brassica rapa HOM05D010525 ORTHO05D007195 6.9e-08 61.2 60 56.7
Cc07_g00130 Coffea canephora HOM05D007617 ORTHO05D007195 6.9e-08 61.2 73 60.3
Atru.chr9.1807 Acer truncatum HOM05D007617 ORTHO05D007195 9.0e-08 60.8 148 37.8
Thhalv10010898m.g Eutrema salsugineum HOM05D010525 ORTHO05D007195 9.0e-08 60.8 74 47.3
Lsat_1_v5_gn_2_94241 Lactuca sativa HOM05D007617 ORTHO05D007195 9.0e-08 60.8 142 36.6
CANSAT80G0013 Cannabis sativa HOM05D007617 ORTHO05D007195 1.2e-07 60.5 143 36.4
CsaV3_3G027400 Cucumis sativus L. HOM05D007617 ORTHO05D007195 1.2e-07 60.5 142 36.6
Manes.15G153500 Manihot esculenta HOM05D007617 ORTHO05D007195 1.2e-07 60.5 147 40.1
AL8G40240 Arabidopsis lyrata HOM05D010525 ORTHO05D007195 2.6e-07 59.3 67 56.7
Sc04g0009720 Simmondsia chinensis HOM05D007617 ORTHO05D007195 2.6e-07 59.3 97 46.4
EL10As2g23175 Beta vulgaris HOM05D007617 ORTHO05D007195 3.4e-07 58.9 135 37.8
BcaB01g00826 Brassica carinata HOM05D010525 ORTHO05D007195 3.4e-07 58.9 65 53.8
TWI23G0333 Tripterygium wilfordii HOM05D007617 ORTHO05D007195 5.8e-07 58.2 140 40.0
BcaC07g39315 Brassica carinata HOM05D010525 ORTHO05D007195 7.6e-07 57.8 145 33.1
C08p23300 Brassica napus HOM05D010525 ORTHO05D007195 7.6e-07 57.8 145 33.1
BolC8t49961H Brassica oleracea HOM05D010525 ORTHO05D007195 7.6e-07 57.8 145 33.1
Haze_07632 Corylus avellana HOM05D007617 ORTHO05D007195 7.6e-07 57.8 151 36.4
Os03g0670000 Oryza sativa ssp. japonica HOM05D007617 ORTHO05D007195 1.0e-06 57.4 119 39.5
Hund06047 Selenicereus undatus HOM05D007617 ORTHO05D007195 1.3e-06 57.0 134 36.6
Actinidia36140 Actinidia chinensis HOM05D007617 ORTHO05D007195 1.7e-06 56.6 146 37.7
Dinv33408 Davidia involucrata HOM05D007617 ORTHO05D007195 1.7e-06 56.6 140 38.6
Sp5g13710 Schrenkiella parvula HOM05D010525 ORTHO05D007195 1.7e-06 56.6 157 33.1
MSTRG.15542 Avicennia marina HOM05D007617 ORTHO05D007195 2.2e-06 56.2 88 46.6
SGA_v2.0_scaffold30G12404 Striga asiatica HOM05D007617 ORTHO05D007195 2.2e-06 56.2 67 53.7
Zm00001eb306910 Zea mays HOM05D007617 ORTHO05D007195 3.8e-06 55.5 60 61.7
QL10p005918 Quercus lobata HOM05D007617 ORTHO05D007195 6.5e-06 54.7 148 38.5
TAR622G0315 Trochodendron aralioides HOM05D007617 ORTHO05D007195 6.5e-06 54.7 149 34.9
Lsat_1_v5_gn_3_30061 Lactuca sativa HOM05D007617 ORTHO05D007195 8.4e-06 54.3 124 36.3


User provided reference genes

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