Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G2472 Cannabis sativa HOM05D007753 ORTHO05D009385 3.3e-220 768.1 385 100.0
COL.COLO4_12908 Corchorus olitorius HOM05D007753 ORTHO05D009385 9.1e-122 441.0 384 56.0
FAN02G0819 Fragaria x ananassa HOM05D007753 ORTHO05D009385 2.7e-121 439.5 391 56.0
FAN14G1500 Fragaria x ananassa HOM05D007753 ORTHO05D009385 5.9e-121 438.3 391 56.0
RcHm_v2.0_Chr2g0136491 Rosa chinensis HOM05D007753 ORTHO05D009385 2.9e-120 436.0 394 55.6
FAN05G5641 Fragaria x ananassa HOM05D007753 ORTHO05D009385 8.6e-120 434.5 391 55.0
Prupe.3G081200 Prunus persica HOM05D007753 ORTHO05D009385 1.9e-119 433.3 399 55.9
FvH4_6g30250 Fragaria vesca HOM05D007753 ORTHO05D009385 2.5e-119 433.0 391 55.5
vmacro18967 Vaccinium macrocarpon HOM05D007753 ORTHO05D009385 2.5e-119 433.0 385 55.8
Haze_16518 Corylus avellana HOM05D007753 ORTHO05D009385 4.7e-118 428.7 392 54.3
MD17G1206200 Malus domestica HOM05D007753 ORTHO05D009385 1.8e-117 426.8 397 54.9
Cfa002006 Carpinus fangiana HOM05D007753 ORTHO05D009385 4.0e-117 425.6 394 54.1
Cc04_g04070 Coffea canephora HOM05D007753 ORTHO05D009385 4.0e-117 425.6 386 52.8
Thecc.06G071000 Theobroma cacao HOM05D007753 ORTHO05D009385 5.2e-117 425.2 371 55.3
Lj5C69T4 Lonicera japonica HOM05D007753 ORTHO05D009385 1.2e-116 424.1 382 54.2
Hma1.2p1_0515F.1_g170220 Hydrangea macrophylla HOM05D007753 ORTHO05D009385 1.5e-116 423.7 384 54.9
Cpa.g.sc10.226 Carica papaya HOM05D007753 ORTHO05D009385 3.7e-115 419.1 392 55.4
Rhsim08G0215900 Rhododendron simsii HOM05D007753 ORTHO05D009385 1.1e-114 417.5 385 53.5
Nitab4.5_0002257g0030 Nicotiana tabacum HOM05D007753 ORTHO05D009385 2.4e-114 416.4 384 52.3
QL05p027928 Quercus lobata HOM05D007753 ORTHO05D009385 9.2e-114 414.5 386 54.1
CsaV3_4G001420 Cucumis sativus L. HOM05D007753 ORTHO05D009385 1.2e-113 414.1 385 53.2
ClCG00G004440 Citrullus lanatus HOM05D007753 ORTHO05D009385 2.7e-113 412.9 385 55.3
ClCG07G012780 Citrullus lanatus HOM05D007753 ORTHO05D009385 2.7e-113 412.9 385 55.3
CiPaw.01G244900 Carya illinoinensis HOM05D007753 ORTHO05D009385 3.5e-113 412.5 391 53.7
Gohir.A05G125300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 5.0e-112 408.7 388 52.3
Nitab4.5_0006574g0050 Nicotiana tabacum HOM05D007753 ORTHO05D009385 6.6e-112 408.3 385 50.9
Peaxi162Scf00274g00826 Petunia axillaris HOM05D007753 ORTHO05D009385 2.5e-111 406.4 385 51.2
Dinv30574 Davidia involucrata HOM05D007753 ORTHO05D009385 9.5e-111 404.4 345 56.8
MELO3C017898.2 Cucumis melo HOM05D007753 ORTHO05D009385 6.1e-110 401.7 385 53.0
Gohir.D05G126300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 1.8e-109 400.2 388 51.8
Gorai.009G130300 Gossypium raimondii HOM05D007753 ORTHO05D009385 5.2e-109 398.7 388 51.8
Sed0004194 Sechium edule HOM05D007753 ORTHO05D009385 2.9e-107 392.9 381 51.7
Manes.11G053400 Manihot esculenta HOM05D007753 ORTHO05D009385 3.7e-107 392.5 391 49.1
Glyma.08G210700 Glycine max HOM05D007753 ORTHO05D009385 6.4e-107 391.7 385 48.8
PGSC0003DMG400000606 Solanum tuberosum HOM05D007753 ORTHO05D009385 1.1e-106 391.0 390 49.2
Nn8g39391 Nelumbo nucifera HOM05D007753 ORTHO05D009385 1.8e-106 390.2 386 49.0
TAR626G0406 Trochodendron aralioides HOM05D007753 ORTHO05D009385 2.4e-106 389.8 385 50.1
Sopen03g035370 Solanum pennellii HOM05D007753 ORTHO05D009385 7.0e-106 388.3 389 49.1
TWI75G0540 Tripterygium wilfordii HOM05D007753 ORTHO05D009385 9.2e-106 387.9 382 50.8
Solyc03g116480.1 Solanum lycopersicum HOM05D007753 ORTHO05D009385 4.6e-105 385.6 389 49.1
PGR102G0169 Punica granatum HOM05D007753 ORTHO05D009385 1.0e-104 384.4 386 49.0
Lj3g0017927 Lotus japonicus HOM05D007753 ORTHO05D009385 1.3e-104 384.0 382 48.4
TAR626G0264 Trochodendron aralioides HOM05D007753 ORTHO05D009385 3.0e-104 382.9 385 49.4
arahy.Tifrunner.gnm1.ann1.M43JJC Arachis hypogaea HOM05D007753 ORTHO05D009385 3.9e-104 382.5 397 49.4
arahy.Tifrunner.gnm1.ann1.PVCU19 Arachis hypogaea HOM05D007753 ORTHO05D009385 5.0e-104 382.1 397 49.4
TPR.G38673 Trifolium pratense HOM05D007753 ORTHO05D009385 5.0e-104 382.1 389 49.4
Glyma.07G032000 Glycine max HOM05D007753 ORTHO05D009385 9.5e-103 377.9 381 48.6
Nn2g11967 Nelumbo nucifera HOM05D007753 ORTHO05D009385 6.2e-102 375.2 388 48.2
Atru.chr1.3069 Acer truncatum HOM05D007753 ORTHO05D009385 1.8e-101 373.6 392 50.3
Sed0009628 Sechium edule HOM05D007753 ORTHO05D009385 1.8e-101 373.6 385 49.4
CAN.G407.105 Capsicum annuum HOM05D007753 ORTHO05D009385 8.9e-101 371.3 391 49.4
Psat7g000960 Pisum sativum HOM05D007753 ORTHO05D009385 1.5e-100 370.5 393 48.1
Medtr4g011090 Medicago truncatula HOM05D007753 ORTHO05D009385 3.4e-100 369.4 389 47.0
Sabra03G0036100 Salix brachista HOM05D007753 ORTHO05D009385 1.7e-99 367.1 388 47.7
Aqoxy7G02101 Aquilegia oxysepala HOM05D007753 ORTHO05D009385 2.2e-99 366.7 393 47.1
Migut.I00798 Erythranthe guttata HOM05D007753 ORTHO05D009385 2.2e-99 366.7 385 47.3
VMungo0331G0527 Vigna mungo HOM05D007753 ORTHO05D009385 6.4e-99 365.2 385 49.4
MSTRG.11118 Avicennia marina HOM05D007753 ORTHO05D009385 3.0e-96 356.3 381 46.7
DCAR_025487 Daucus carota HOM05D007753 ORTHO05D009385 1.9e-95 353.6 384 45.3
Lalb_Chr04g0262461 Lupinus albus HOM05D007753 ORTHO05D009385 1.9e-95 353.6 379 47.5
Ca_20429_v3 Cicer arietinum L. HOM05D007753 ORTHO05D009385 1.6e-94 350.5 392 46.2
Potri.003G062000 Populus trichocarpa HOM05D007753 ORTHO05D009385 2.8e-94 349.7 342 51.5
CSS0017457 Camellia sinensis var. sinensis HOM05D007753 ORTHO05D009385 3.1e-93 346.3 381 47.8
SGA_v2.0_scaffold5G02663 Striga asiatica HOM05D007753 ORTHO05D009385 5.2e-93 345.5 384 44.8
ECA232G3915 Erigeron canadensis HOM05D007753 ORTHO05D009385 6.8e-93 345.1 385 46.0
Phvul.010G154000 Phaseolus vulgaris HOM05D007753 ORTHO05D009385 6.8e-93 345.1 381 46.5
HanXRQChr09g0274921 Helianthus annuus HOM05D007753 ORTHO05D009385 2.9e-91 339.7 387 43.4
Ciclev10027449m.g Citrus clementina HOM05D007753 ORTHO05D009385 7.1e-90 335.1 311 53.4
Eucgr.F02545 Eucalyptus grandis HOM05D007753 ORTHO05D009385 4.6e-89 332.4 290 55.5
HanXRQChr16g0500541 Helianthus annuus HOM05D007753 ORTHO05D009385 4.3e-87 325.9 385 42.9
Rhsim03G0103900 Rhododendron simsii HOM05D007753 ORTHO05D009385 3.8e-83 312.8 336 48.5
QL05p063911 Quercus lobata HOM05D007753 ORTHO05D009385 2.0e-76 290.4 257 57.6
Oeu015237.1 Olea europaea HOM05D007753 ORTHO05D009385 9.9e-76 288.1 378 40.7
Lsat_1_v5_gn_4_105861 Lactuca sativa HOM05D007753 ORTHO05D009385 2.9e-67 260.0 261 48.7
SEGI_20973 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 7.9e-57 225.3 393 34.1
SEGI_19660 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 8.2e-54 215.3 343 35.3
Nn1g04494 Nelumbo nucifera HOM05D007753 ORTHO05D009385 3.8e-51 206.5 207 46.4
TPR.G7327 Trifolium pratense HOM05D007753 ORTHO05D009385 6.7e-48 195.7 201 46.8
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 3.2e-42 176.8 346 30.6
Rhsim03G0101500 Rhododendron simsii HOM05D007753 ORTHO05D009385 1.0e-40 171.8 156 53.2
Pp3c22_13680 Physcomitrium patens HOM05D007753 ORTHO05D009385 5.9e-36 156.0 348 29.3
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 1.3e-35 154.8 349 29.8
ATR1156G045 Amborella trichopoda HOM05D007753 ORTHO05D009385 6.1e-25 119.4 222 32.4
Actinidia01765 Actinidia chinensis HOM05D007753 ORTHO05D009385 6.7e-24 115.9 108 54.6
Pp3c7_9930 Physcomitrium patens HOM05D002809 ORTHO05D004939 2.8e-22 110.5 323 26.3
Mapoly0137s0025 Marchantia polymorpha HOM05D004302 ORTHO05D004939 2.6e-20 104.0 343 25.7
Aqoxy5G02276 Aquilegia oxysepala HOM05D002809 ORTHO05D004939 7.7e-20 102.4 395 23.5
AagrBONN_evm.TU.Sc2ySwM_117.2091 Anthoceros agrestis HOM05D003005 ORTHO05D004939 8.5e-19 99.0 360 24.4
CDE06G1895 Ceratophyllum demersum HOM05D004302 ORTHO05D007546 1.2e-17 95.1 319 24.8
Mapoly0063s0077 Marchantia polymorpha HOM05D002809 ORTHO05D004939 1.6e-17 94.7 320 28.1
Mapoly0168s0028 Marchantia polymorpha HOM05D003005 ORTHO05D007546 1.6e-17 94.7 313 26.5
Mapoly0101s0058 Marchantia polymorpha HOM05D002809 ORTHO05D004939 2.7e-17 94.0 337 24.6
SEGI_07480 Sequoiadendron giganteum HOM05D005977 ORTHO05D004563 1.8e-16 91.3 294 24.8
Nn4g24931 Nelumbo nucifera HOM05D007753 ORTHO05D009385 2.3e-16 90.9 143 39.2
CDE05G2584 Ceratophyllum demersum HOM05D005977 ORTHO05D007546 4.0e-16 90.1 331 26.3
Pp3c3_32280 Physcomitrium patens HOM05D002809 ORTHO05D004563 4.0e-16 90.1 334 22.8
SEGI_38976 Sequoiadendron giganteum HOM05D002809 ORTHO05D004939 8.8e-16 89.0 316 23.7
SEGI_36099 Sequoiadendron giganteum HOM05D003005 ORTHO05D030467 1.5e-15 88.2 345 24.1
AagrBONN_evm.TU.Sc2ySwM_344.2438 Anthoceros agrestis HOM05D002809 ORTHO05D004939 2.0e-15 87.8 316 24.4
Mapoly0063s0081 Marchantia polymorpha HOM05D002809 ORTHO05D004563 4.4e-15 86.7 256 24.2
Pp3c26_380 Physcomitrium patens HOM05D002809 ORTHO05D007546 1.3e-14 85.1 407 24.1
Mapoly0045s0086 Marchantia polymorpha HOM05D005977 ORTHO05D009385 1.7e-14 84.7 337 22.0
Manes.13G079162 Manihot esculenta HOM05D005977 ORTHO05D007546 2.8e-14 84.0 337 25.2
MapolyY_A0023 Marchantia polymorpha HOM05D002809 ORTHO05D004563 3.7e-14 83.6 271 24.4
Oeu049142.1 Olea europaea HOM05D002809 ORTHO05D004563 3.7e-14 83.6 320 23.4
TWI73G0225 Tripterygium wilfordii HOM05D005977 ORTHO05D007546 3.7e-14 83.6 341 24.0
Aqoxy5G03341 Aquilegia oxysepala HOM05D002809 ORTHO05D004563 4.8e-14 83.2 334 22.5
Nn3g16449 Nelumbo nucifera HOM05D002809 ORTHO05D004563 8.2e-14 82.4 334 21.6
Nn4g22302 Nelumbo nucifera HOM05D002809 ORTHO05D004563 8.2e-14 82.4 334 21.9
Ciclev10031436m.g Citrus clementina HOM05D002809 ORTHO05D004563 1.8e-13 81.3 334 22.2
Manes.12G010000 Manihot esculenta HOM05D002809 ORTHO05D004563 1.8e-13 81.3 342 21.9
arahy.Tifrunner.gnm1.ann1.GTY4NG Arachis hypogaea HOM05D005977 ORTHO05D007546 2.4e-13 80.9 355 24.2
SMO239G0172 Selaginella moellendorffii HOM05D003005 ORTHO05D004563 2.4e-13 80.9 352 22.4
SMO361G0323 Selaginella moellendorffii HOM05D002809 ORTHO05D004939 2.4e-13 80.9 337 22.0
AagrBONN_evm.TU.Sc2ySwM_362.2328 Anthoceros agrestis HOM05D004302 ORTHO05D009385 4.1e-13 80.1 351 22.5
arahy.Tifrunner.gnm1.ann1.N7CMLX Arachis hypogaea HOM05D005977 ORTHO05D007546 4.1e-13 80.1 347 23.9
SMO351G0091 Selaginella moellendorffii HOM05D005977 ORTHO05D007546 4.1e-13 80.1 325 21.8
Hund25470 Selenicereus undatus HOM05D002809 ORTHO05D004563 4.1e-13 80.1 334 23.4
Atru.chr10.348 Acer truncatum HOM05D005977 ORTHO05D007546 7.0e-13 79.3 340 23.5
CAN.G809.67 Capsicum annuum HOM05D005977 ORTHO05D007546 1.6e-12 78.2 339 23.9
Haze_05266 Corylus avellana HOM05D005977 ORTHO05D007546 1.6e-12 78.2 346 25.4
Pp3c24_1980 Physcomitrium patens HOM05D003005 ORTHO05D004563 1.6e-12 78.2 234 28.6
MSTRG.498 Avicennia marina HOM05D002809 ORTHO05D004563 2.0e-12 77.8 335 21.8
EL10Ac6g13516 Beta vulgaris HOM05D002809 ORTHO05D004563 2.0e-12 77.8 336 23.5
SMO116G0047 Selaginella moellendorffii HOM05D002809 ORTHO05D004563 2.7e-12 77.4 247 26.7
CDE02G3409 Ceratophyllum demersum HOM05D005977 ORTHO05D007546 3.5e-12 77.0 331 24.5
ECA246G0607 Erigeron canadensis HOM05D002809 ORTHO05D004563 3.5e-12 77.0 314 23.2
Eucgr.E04314 Eucalyptus grandis HOM05D005977 ORTHO05D007546 3.5e-12 77.0 353 22.7
Cfa001126 Carpinus fangiana HOM05D005977 ORTHO05D007546 5.9e-12 76.3 345 24.9
Ca_18233_v3 Cicer arietinum L. HOM05D005977 ORTHO05D007546 5.9e-12 76.3 346 24.9
Sopen02g026280 Solanum pennellii HOM05D005977 ORTHO05D007546 1.0e-11 75.5 342 23.7
PGSC0003DMG400017736 Solanum tuberosum HOM05D005977 ORTHO05D007546 1.0e-11 75.5 344 23.5
Solyc02g081670.1 Solanum lycopersicum HOM05D005977 ORTHO05D007546 1.3e-11 75.1 342 23.7
Atru.chr10.318 Acer truncatum HOM05D005977 ORTHO05D007546 1.7e-11 74.7 341 22.9
Mapoly0033s0124 Marchantia polymorpha HOM05D004302 ORTHO05D004939 1.7e-11 74.7 316 23.4
Lalb_Chr13g0293451 Lupinus albus HOM05D005977 ORTHO05D007546 2.2e-11 74.3 336 24.7
Sc14g0009090 Simmondsia chinensis HOM05D002809 ORTHO05D004563 2.9e-11 73.9 337 22.8
Dinv10947 Davidia involucrata HOM05D002809 ORTHO05D004563 3.8e-11 73.6 335 20.6
Migut.M02009 Erythranthe guttata HOM05D005977 ORTHO05D007546 6.5e-11 72.8 349 24.6
CANSAT35G0189 Cannabis sativa HOM05D005977 ORTHO05D007546 1.1e-10 72.0 348 25.6
ClCG06G001130 Citrullus lanatus HOM05D002809 ORTHO05D004563 1.5e-10 71.6 338 21.0
Sabra02G0093200 Salix brachista HOM05D007423 ORTHO05D009091 1.5e-10 71.6 324 25.9
CiPaw.04G106700 Carya illinoinensis HOM05D007853 ORTHO05D009873 2.5e-10 70.9 336 22.3
DCAR_001274 Daucus carota HOM05D005977 ORTHO05D007546 2.5e-10 70.9 344 23.0
Glyma.08G088700 Glycine max HOM05D005977 ORTHO05D007546 2.5e-10 70.9 349 23.8
Actinidia09645 Actinidia chinensis HOM05D002809 ORTHO05D004563 5.5e-10 69.7 342 21.3
AUR62036157 Chenopodium quinoa HOM05D005977 ORTHO05D007546 5.5e-10 69.7 357 23.2
Migut.L01495 Erythranthe guttata HOM05D004302 ORTHO05D004939 9.4e-10 68.9 310 23.5
Glyma.05G134000 Glycine max HOM05D005977 ORTHO05D007546 9.4e-10 68.9 339 23.9
Sed0016657 Sechium edule HOM05D002809 ORTHO05D004563 1.2e-09 68.6 343 20.7
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 8.0e-09 65.9 94 40.4
Duzib211G0565 Durio zibethinus HOM05D000007 ORTHO05D000521 8.0e-09 65.9 300 21.0
Hma1.2p1_0185F.1_g081460 Hydrangea macrophylla HOM05D005977 ORTHO05D007546 8.0e-09 65.9 353 22.9
Lalb_Chr18g0044251 Lupinus albus HOM05D003005 ORTHO05D004170 8.0e-09 65.9 286 24.5
Lalb_Chr12g0209141 Lupinus albus HOM05D005977 ORTHO05D007546 1.0e-08 65.5 343 23.3
Mapoly0005s0092 Marchantia polymorpha HOM05D007753 ORTHO05D009385 1.0e-08 65.5 298 23.5
Nn4g24930 Nelumbo nucifera HOM05D007753 ORTHO05D009385 2.3e-08 64.3 43 62.8
Gorai.007G167800 Gossypium raimondii HOM05D000007 ORTHO05D000521 6.8e-08 62.8 313 24.0
SEGI_04786 Sequoiadendron giganteum HOM05D003005 ORTHO05D026051 1.2e-07 62.0 301 21.3
GSVIVG01009345001 Vitis vinifera HOM05D007423 ORTHO05D009091 2.6e-07 60.8 88 39.8
Actinidia22694 Actinidia chinensis HOM05D007423 ORTHO05D009091 3.4e-07 60.5 144 28.5
A03p42930 Brassica napus HOM05D000209 ORTHO05D000129 5.7e-07 59.7 275 24.0
Potri.002G118700 Populus trichocarpa HOM05D007423 ORTHO05D009091 5.7e-07 59.7 124 32.3
Pp3c10_19850 Physcomitrium patens HOM05D030659 ORTHO05D009385 9.8e-07 58.9 278 22.3
CAN.G358.109 Capsicum annuum HOM05D002420 ORTHO05D002422 1.7e-06 58.2 231 26.4
CANSAT25G1658 Cannabis sativa HOM05D007423 ORTHO05D009091 2.2e-06 57.8 100 32.0
Medtr1g033310 Medicago truncatula HOM05D002809 ORTHO05D004563 3.7e-06 57.0 277 19.9
AT1G57790 Arabidopsis thaliana HOM05D001286 ORTHO05D000440 6.3e-06 56.2 258 25.2
Mapoly0006s0116 Marchantia polymorpha HOM05D002809 ORTHO05D010190 6.3e-06 56.2 273 22.0
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 8.3e-06 55.8 343 22.2
SEGI_10025 Sequoiadendron giganteum HOM05D012660 ORTHO05D012113 8.3e-06 55.8 125 28.0


User provided reference genes

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