Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 2.3e-165 585.5 293 100.0
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 9.6e-164 580.1 293 98.6
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 9.1e-122 440.7 290 76.9
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 9.4e-119 430.6 290 74.5
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 2.1e-118 429.5 291 73.9
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 3.0e-117 425.6 292 72.3
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 7.4e-116 421.0 285 74.7
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 8.2e-115 417.5 292 70.5
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 4.1e-114 415.2 286 73.4
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 1.6e-113 413.3 289 71.6
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 2.0e-113 412.9 292 69.9
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 2.6e-113 412.5 288 72.6
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 4.5e-113 411.8 289 72.7
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 1.7e-112 409.8 292 69.5
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 1.1e-111 407.1 291 70.4
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 1.1e-111 407.1 285 72.6
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 1.9e-111 406.4 293 70.0
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 2.5e-111 406.0 287 70.7
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 3.2e-111 405.6 289 72.3
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 3.0e-109 399.1 286 71.3
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 8.8e-109 397.5 290 70.7
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 4.4e-108 395.2 286 70.3
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 9.7e-108 394.0 259 75.3
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 5.3e-106 388.3 287 70.7
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.2e-105 387.1 278 71.9
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 2.7e-105 386.0 286 69.2
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 4.5e-105 385.2 294 67.7
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 7.7e-105 384.4 304 64.5
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 2.2e-104 382.9 294 67.7
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 2.2e-104 382.9 286 68.9
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 2.2e-104 382.9 286 66.8
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 2.9e-104 382.5 289 66.8
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 5.0e-104 381.7 289 67.1
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 6.5e-104 381.3 289 66.4
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.5e-103 380.2 286 67.1
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 1.9e-103 379.8 265 70.6
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 3.2e-103 379.0 286 67.1
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 3.2e-103 379.0 287 67.9
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 7.2e-103 377.9 286 66.4
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 2.7e-102 375.9 219 82.6
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 8.0e-102 374.4 285 66.7
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.0e-101 374.0 254 73.6
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 1.4e-101 373.6 286 67.1
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 1.4e-101 373.6 269 71.4
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 3.0e-101 372.5 290 65.5
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 3.0e-101 372.5 288 64.9
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 5.2e-101 371.7 293 64.8
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 1.2e-100 370.5 289 66.1
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 1.2e-100 370.5 293 64.5
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 2.6e-100 369.4 285 67.7
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 4.4e-100 368.6 291 65.3
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 5.7e-100 368.2 287 65.2
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 5.7e-100 368.2 254 73.2
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 7.5e-100 367.9 288 64.6
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 7.5e-100 367.9 287 66.6
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 9.8e-100 367.5 287 65.5
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 1.8e-98 363.2 286 65.4
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 4.1e-98 362.1 292 63.0
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 2.0e-97 359.8 225 76.4
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 3.5e-97 359.0 255 70.6
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 4.5e-97 358.6 318 59.1
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 1.7e-96 356.7 284 62.3
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 1.7e-96 356.7 220 76.4
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 2.9e-96 355.9 288 59.7
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 1.1e-95 354.0 297 62.0
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 1.1e-95 354.0 284 63.0
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 1.9e-95 353.2 286 65.7
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 2.5e-95 352.8 274 64.6
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 4.2e-95 352.1 231 74.0
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 7.2e-95 351.3 286 64.0
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.1e-94 349.7 289 63.0
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 8.0e-94 347.8 292 58.2
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 8.0e-94 347.8 260 66.5
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 3.0e-93 345.9 288 64.9
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 4.0e-93 345.5 286 61.5
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.2e-92 344.0 289 61.6
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 2.6e-92 342.8 255 70.2
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 5.7e-92 341.7 286 60.1
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 3.7e-91 339.0 286 60.1
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 4.9e-91 338.6 227 71.4
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 1.1e-90 337.4 266 65.4
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 1.4e-90 337.0 223 69.5
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 3.1e-90 335.9 316 58.5
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 5.4e-90 335.1 347 55.3
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 7.0e-90 334.7 260 66.5
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 9.2e-90 334.3 224 71.9
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 1.2e-89 334.0 224 69.2
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.6e-89 333.6 254 67.3
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 3.5e-89 332.4 233 70.4
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 7.8e-89 331.3 289 60.2
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 2.9e-88 329.3 254 66.1
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 2.5e-87 326.2 288 56.6
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 5.6e-87 325.1 288 57.6
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 2.8e-86 322.8 254 65.0
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 4.7e-86 322.0 225 68.4
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 2.6e-84 316.2 190 78.4
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 2.4e-82 309.7 224 70.1
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 4.1e-82 308.9 327 52.3
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 4.6e-81 305.4 336 50.6
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 8.6e-80 301.2 233 64.8
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 5.6e-79 298.5 287 57.5
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.1e-77 294.3 254 59.4
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 5.2e-77 292.0 254 58.7
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 5.2e-77 292.0 254 58.7
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 1.5e-76 290.4 254 58.7
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 1.5e-76 290.4 254 58.7
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 1.7e-75 287.0 169 80.5
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 5.4e-74 282.0 201 70.1
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 1.5e-71 273.9 140 96.4
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 3.3e-71 272.7 166 78.9
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 1.1e-69 267.7 286 53.8
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 1.7e-67 260.4 291 51.9
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 3.9e-64 249.2 252 48.8
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.0e-60 236.9 146 78.1
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 5.8e-60 235.3 252 46.8
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 9.9e-60 234.6 210 51.4
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 1.1e-55 221.1 274 41.2
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 9.0e-53 211.5 106 95.3
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 1.3e-51 207.6 263 47.9
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 1.1e-47 194.5 156 66.0
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 3.6e-46 189.5 198 46.5
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 1.8e-45 187.2 105 84.8
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 1.4e-34 151.0 134 58.2
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 5.8e-28 129.0 186 33.9
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 7.1e-26 122.1 225 32.9
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 6.1e-25 119.0 129 51.2
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 1.0e-24 118.2 80 68.8
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 8.7e-24 115.2 80 66.2
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 3.7e-22 109.8 81 59.3
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 1.0e-19 101.7 89 57.3
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 5.0e-19 99.4 121 50.4
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 1.4e-18 97.8 70 62.9
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 1.6e-17 94.4 83 54.2
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 1.0e-11 75.1 47 74.5
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 4.2e-10 69.7 39 87.2
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 1.6e-09 67.8 40 75.0
CDE02G1103 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 3.3e-07 60.1 51 58.8
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 9.7e-07 58.5 52 50.0
Lj1A976T72 Lonicera japonica HOM05D005379 ORTHO05D006661 2.2e-06 57.4 83 47.0


User provided reference genes

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