Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 3.7e-160 568.2 287 100.0
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 7.1e-111 404.4 294 69.7
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 8.6e-109 397.5 299 68.6
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 1.9e-108 396.4 288 68.4
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 3.3e-108 395.6 290 68.3
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 3.6e-107 392.1 289 70.9
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 5.2e-106 388.3 290 70.0
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 3.8e-104 382.1 290 66.9
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 1.4e-103 380.2 283 69.3
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 1.9e-103 379.8 292 65.4
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 9.2e-103 377.5 286 69.9
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 3.9e-101 372.1 235 76.2
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 3.9e-101 372.1 291 64.9
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 3.9e-101 372.1 291 66.7
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 5.1e-101 371.7 291 65.3
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.1e-100 370.5 291 65.3
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.5e-100 370.2 291 64.9
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.6e-99 366.7 290 64.5
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 2.1e-99 366.3 291 64.9
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 5.3e-98 361.7 289 65.4
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 5.3e-98 361.7 295 65.8
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 9.0e-98 360.9 287 64.1
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.2e-97 360.5 291 63.9
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 3.4e-97 359.0 315 60.3
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 3.4e-97 359.0 277 69.0
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 4.4e-97 358.6 303 63.0
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 1.3e-96 357.1 285 64.9
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 2.2e-96 356.3 292 64.0
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 2.9e-96 355.9 283 64.3
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 3.8e-96 355.5 283 67.1
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 6.4e-96 354.8 285 63.9
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 8.4e-96 354.4 263 68.1
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 2.4e-95 352.8 314 60.2
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 2.4e-95 352.8 289 63.3
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 4.2e-95 352.1 272 66.5
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 4.2e-95 352.1 296 62.5
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 5.4e-95 351.7 283 62.9
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 7.1e-95 351.3 264 68.2
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 7.1e-95 351.3 286 64.7
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 1.2e-94 350.5 296 63.9
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 1.2e-94 350.5 296 63.9
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 2.1e-94 349.7 291 62.9
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 3.5e-94 349.0 288 61.1
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 6.0e-94 348.2 285 60.7
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 1.0e-93 347.4 287 63.1
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 1.7e-93 346.7 293 61.8
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 3.9e-93 345.5 285 62.5
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 8.7e-93 344.4 295 60.7
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 1.1e-92 344.0 241 67.6
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.9e-92 343.2 292 61.3
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.9e-92 343.2 292 61.3
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 2.5e-92 342.8 284 63.4
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 3.3e-92 342.4 258 67.8
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 7.3e-92 341.3 288 60.4
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 1.3e-91 340.5 250 68.8
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 1.3e-91 340.5 303 59.1
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 1.3e-91 340.5 291 62.5
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 1.6e-91 340.1 287 62.7
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 1.6e-91 340.1 296 59.1
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 3.6e-91 339.0 292 59.6
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 3.6e-91 339.0 285 61.4
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 4.8e-91 338.6 295 59.3
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 8.1e-91 337.8 292 59.2
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 8.1e-91 337.8 283 60.8
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.1e-90 337.4 274 65.3
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 1.4e-90 337.0 342 54.1
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 1.4e-90 337.0 292 59.6
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 1.8e-90 336.7 289 63.0
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 4.0e-90 335.5 289 61.2
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 5.3e-90 335.1 290 61.7
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 1.5e-89 333.6 292 60.3
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 1.5e-89 333.6 276 65.2
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 2.0e-89 333.2 206 77.7
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 2.0e-89 333.2 227 70.9
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 3.4e-89 332.4 295 59.3
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 3.4e-89 332.4 295 58.3
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 7.6e-89 331.3 256 65.2
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 1.3e-88 330.5 294 59.2
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 1.7e-88 330.1 292 58.6
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 2.9e-88 329.3 289 60.6
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 3.8e-88 328.9 292 58.2
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 3.8e-88 328.9 292 58.2
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 3.8e-88 328.9 277 63.5
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 3.8e-88 328.9 296 58.4
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 1.1e-87 327.4 327 55.7
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.4e-87 327.0 241 66.8
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 1.9e-87 326.6 290 59.0
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 5.4e-87 325.1 290 57.6
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 2.1e-86 323.2 236 65.3
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 3.9e-85 318.9 289 60.2
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 1.1e-84 317.4 285 58.9
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.5e-84 317.0 260 60.4
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 1.9e-84 316.6 282 58.5
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 9.6e-84 314.3 256 62.9
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 9.6e-84 314.3 226 72.1
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 3.1e-82 309.3 289 56.7
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 3.4e-81 305.8 288 53.8
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.1e-79 300.8 222 67.6
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.6e-78 297.0 205 69.3
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 4.6e-78 295.4 212 67.5
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 4.6e-78 295.4 294 55.4
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 5.1e-77 292.0 283 54.1
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 3.3e-76 289.3 291 51.2
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 5.8e-73 278.5 264 58.0
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 2.2e-72 276.6 229 63.3
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 5.5e-71 271.9 256 57.8
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 2.3e-69 266.5 282 51.8
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 2.5e-63 246.5 232 62.5
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 1.6e-62 243.8 201 62.2
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.5e-60 237.3 201 65.7
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 2.5e-60 236.5 277 48.4
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 1.3e-59 234.2 149 77.9
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 4.5e-57 225.7 225 57.8
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 1.3e-56 224.2 158 68.4
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 6.5e-56 221.9 215 56.7
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 1.9e-55 220.3 217 53.0
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 1.6e-54 217.2 188 53.7
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.4e-50 204.1 178 60.7
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 5.3e-50 202.2 269 41.3
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 5.9e-49 198.7 275 42.5
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 7.7e-49 198.4 271 41.0
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 7.2e-47 191.8 130 70.0
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 2.0e-44 183.7 266 44.7
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 1.7e-43 180.6 170 57.6
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.6e-41 174.1 106 76.4
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 1.3e-40 171.0 220 43.2
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 3.6e-38 162.9 122 62.3
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 8.0e-38 161.8 201 47.3
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 8.0e-38 161.8 288 39.6
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 1.0e-37 161.4 117 65.0
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 7.0e-34 148.7 285 35.1
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 3.6e-30 136.3 137 54.0
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.4e-26 123.6 83 69.9
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 3.5e-25 119.8 218 39.0
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 3.8e-24 116.3 200 40.0
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 5.2e-21 105.9 172 42.4
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 3.2e-18 96.7 201 31.8
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 1.6e-17 94.4 213 31.9


User provided reference genes

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