Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G2332 Cannabis sativa HOM05D000003 ORTHO05D000167 1.6e-129 466.1 229 100.0
CANSAT56G2371 Cannabis sativa HOM05D000003 ORTHO05D000004 8.0e-33 144.8 174 42.5
CANSAT25G2359 Cannabis sativa HOM05D000003 ORTHO05D000167 1.2e-31 141.0 194 41.2
CANSAT01G0804 Cannabis sativa HOM05D000003 ORTHO05D000167 1.6e-20 104.0 159 32.1
QL93p0138_0008 Quercus lobata HOM05D000003 ORTHO05D000167 1.8e-16 90.5 212 27.4
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 5.2e-16 89.0 125 36.8
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 5.2e-16 89.0 191 29.3
QL03p039168 Quercus lobata HOM05D000003 ORTHO05D000167 6.8e-16 88.6 199 25.6
RcHm_v2.0_Chr7g0187741 Rosa chinensis HOM05D008097 ORTHO05D010102 8.9e-16 88.2 207 27.5
Atru.chr10.535 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-15 87.0 205 28.3
Atru.chr5.1907 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-15 86.3 181 30.4
Atru.chr10.544 Acer truncatum HOM05D000003 ORTHO05D000004 5.8e-15 85.5 205 27.8
CANSAT56G4436 Cannabis sativa HOM05D000003 ORTHO05D000004 9.9e-15 84.7 201 27.9
AUR62037574 Chenopodium quinoa HOM05D000003 ORTHO05D000167 1.7e-14 84.0 144 33.3
RcHm_v2.0_Chr1g0354891 Rosa chinensis HOM05D008097 ORTHO05D010102 1.7e-14 84.0 169 29.6
Atru.chr6.787 Acer truncatum HOM05D000003 ORTHO05D000167 2.9e-14 83.2 179 30.2
Atru.chr2.677 Acer truncatum HOM05D000003 ORTHO05D000167 4.9e-14 82.4 201 28.4
Atru.chr5.1665 Acer truncatum HOM05D000003 ORTHO05D000167 4.9e-14 82.4 196 28.1
CANSAT54G2356 Cannabis sativa HOM05D000003 ORTHO05D000004 6.4e-14 82.0 148 35.8
AUR62030077 Chenopodium quinoa HOM05D000003 ORTHO05D000004 8.4e-14 81.6 195 30.8
AUR62041129 Chenopodium quinoa HOM05D000003 ORTHO05D000167 1.4e-13 80.9 190 29.5
Atru.chr1.2712 Acer truncatum HOM05D000003 ORTHO05D000167 1.9e-13 80.5 167 26.9
Os01g0930300 Oryza sativa ssp. japonica HOM05D000003 ORTHO05D000167 1.9e-13 80.5 219 25.6
RcHm_v2.0_Chr4g0398671 Rosa chinensis HOM05D000003 ORTHO05D010102 1.9e-13 80.5 204 26.5
Atru.chr10.114 Acer truncatum HOM05D000003 ORTHO05D000167 3.2e-13 79.7 213 28.2
Atru.chr10.97 Acer truncatum HOM05D000003 ORTHO05D000167 3.2e-13 79.7 213 28.2
FAN16G0608 Fragaria x ananassa HOM05D008097 ORTHO05D010102 3.2e-13 79.7 204 27.9
Atru.chr12.350 Acer truncatum HOM05D000003 ORTHO05D000167 4.2e-13 79.3 202 29.2
CANSAT35G0981 Cannabis sativa HOM05D000003 ORTHO05D000167 4.2e-13 79.3 193 29.0
AUR62024163 Chenopodium quinoa HOM05D000003 ORTHO05D000167 4.2e-13 79.3 177 32.8
CANSAT54G2709 Cannabis sativa HOM05D000003 ORTHO05D000004 5.4e-13 79.0 195 25.6
Atru.chr2.2033 Acer truncatum HOM05D000003 ORTHO05D000167 7.1e-13 78.6 195 28.7
Atru.chr4.2116 Acer truncatum HOM05D000003 ORTHO05D000004 7.1e-13 78.6 179 27.9
Atru.chr11.1957 Acer truncatum HOM05D000003 ORTHO05D000167 1.6e-12 77.4 197 26.9
Atru.chr13.1831 Acer truncatum HOM05D000003 ORTHO05D000167 2.7e-12 76.6 129 33.3
FAN25G3685 Fragaria x ananassa HOM05D008097 ORTHO05D010102 2.7e-12 76.6 204 28.4
Atru.chr13.2526 Acer truncatum HOM05D000003 ORTHO05D000167 3.5e-12 76.3 193 27.5
CANSAT25G3211 Cannabis sativa HOM05D000003 ORTHO05D000167 3.5e-12 76.3 201 24.9
CANSAT56G2204 Cannabis sativa HOM05D000003 ORTHO05D000004 3.5e-12 76.3 215 27.4
FAN02G0134 Fragaria x ananassa HOM05D008097 ORTHO05D010102 3.5e-12 76.3 204 27.5
Atru.chr2.1550 Acer truncatum HOM05D000003 ORTHO05D000167 4.6e-12 75.9 174 29.9
Atru.chr10.149 Acer truncatum HOM05D000003 ORTHO05D000004 6.0e-12 75.5 190 27.4
CANSAT25G2443 Cannabis sativa HOM05D000003 ORTHO05D000004 7.8e-12 75.1 210 26.2
Atru.chr2.108 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-11 74.7 199 25.6
CANSAT25G0899 Cannabis sativa HOM05D000003 ORTHO05D000167 1.0e-11 74.7 198 25.8
Atru.chr13.1151 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-11 74.3 138 30.4
Atru.chr13.1818 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-11 73.9 201 27.9
AUR62036713 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.7e-11 73.9 141 32.6
AUR62037938 Chenopodium quinoa HOM05D000075 ORTHO05D000167 2.3e-11 73.6 195 27.2
Atru.chr10.411 Acer truncatum HOM05D000003 ORTHO05D000167 3.0e-11 73.2 211 28.4
Atru.chr4.1218 Acer truncatum HOM05D000003 ORTHO05D000167 3.0e-11 73.2 213 26.3
Atru.chr7.130 Acer truncatum HOM05D000003 ORTHO05D000126 3.0e-11 73.2 199 27.6
AUR62027518 Chenopodium quinoa HOM05D000003 ORTHO05D000126 3.0e-11 73.2 139 32.4
CANSAT21G0265 Cannabis sativa HOM05D000003 ORTHO05D000167 3.9e-11 72.8 191 26.7
Sed0021352 Sechium edule HOM05D000003 ORTHO05D000167 8.7e-11 71.6 194 27.8
Atru.chr1.3159 Acer truncatum HOM05D000003 ORTHO05D000167 1.5e-10 70.9 173 29.5
Atru.chr2.176 Acer truncatum HOM05D000003 ORTHO05D000167 1.5e-10 70.9 172 27.9
Atru.chr5.1709 Acer truncatum HOM05D000003 ORTHO05D000167 1.5e-10 70.9 129 32.6
Atru.chr4.50 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-10 70.5 174 29.9
Atru.chr8.183 Acer truncatum HOM05D000003 ORTHO05D000167 1.9e-10 70.5 200 29.0
Atru.chr8.265 Acer truncatum HOM05D000003 ORTHO05D000167 1.9e-10 70.5 200 29.0
Atru.chr9.643 Acer truncatum HOM05D000003 ORTHO05D000167 1.9e-10 70.5 206 27.7
CANSAT21G2477 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-10 70.5 222 23.9
CANSAT56G3747 Cannabis sativa HOM05D000003 ORTHO05D000167 1.9e-10 70.5 196 24.5
Atru.chr10.2102 Acer truncatum HOM05D000003 ORTHO05D000167 2.5e-10 70.1 198 27.3
Atru.chr2.931 Acer truncatum HOM05D000003 ORTHO05D000004 3.3e-10 69.7 223 23.3
CANSAT01G0793 Cannabis sativa HOM05D000003 ORTHO05D000004 3.3e-10 69.7 223 26.9
CANSAT01G1807 Cannabis sativa HOM05D000003 ORTHO05D000167 3.3e-10 69.7 195 25.6
RcHm_v2.0_Chr3g0468731 Rosa chinensis HOM05D008097 ORTHO05D010102 3.3e-10 69.7 203 25.6
Atru.chr10.362 Acer truncatum HOM05D000003 ORTHO05D000167 4.3e-10 69.3 213 27.7
Atru.chr12.2264 Acer truncatum HOM05D000003 ORTHO05D000167 4.3e-10 69.3 118 35.6
CANSAT01G1078 Cannabis sativa HOM05D000003 ORTHO05D000004 4.3e-10 69.3 204 26.0
CANSAT11G1079 Cannabis sativa HOM05D000003 ORTHO05D000004 4.3e-10 69.3 204 26.0
Nitab4.5_0006377g0040 Nicotiana tabacum HOM05D000003 ORTHO05D000167 4.3e-10 69.3 202 27.2
Atru.chr5.2695 Acer truncatum HOM05D000003 ORTHO05D000167 5.6e-10 68.9 126 33.3
CANSAT11G0632 Cannabis sativa HOM05D000003 ORTHO05D000004 5.6e-10 68.9 204 26.0
CANSAT56G2867 Cannabis sativa HOM05D000003 ORTHO05D000167 5.6e-10 68.9 202 24.8
QL11p037218 Quercus lobata HOM05D000130 ORTHO05D000004 5.6e-10 68.9 130 30.0
MSTRG.22915 Avicennia marina HOM05D000003 ORTHO05D000167 7.3e-10 68.6 135 27.4
ClCG05G010290 Citrullus lanatus HOM05D000003 ORTHO05D000004 7.3e-10 68.6 147 29.3
Atru.chr11.1423 Acer truncatum HOM05D000003 ORTHO05D000167 9.6e-10 68.2 208 29.3
ClCG05G011730 Citrullus lanatus HOM05D000003 ORTHO05D016240 9.6e-10 68.2 161 31.7
Atru.chr9.954 Acer truncatum HOM05D000003 ORTHO05D000167 1.3e-09 67.8 194 28.4
COL.COLO4_10225 Corchorus olitorius HOM05D000003 ORTHO05D000167 1.3e-09 67.8 203 26.6
CANSAT25G0043 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-09 67.4 194 23.7
CANSAT35G1823 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-09 67.4 191 25.1
FAN09G3474 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.6e-09 67.4 193 23.8
Atru.chr10.669 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-09 67.0 153 27.5
Atru.chr11.542 Acer truncatum HOM05D000003 ORTHO05D000167 2.1e-09 67.0 198 26.3
CANSAT21G1343 Cannabis sativa HOM05D000003 ORTHO05D000167 2.1e-09 67.0 171 27.5
CANSAT80G0199 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-09 67.0 200 25.0
COL.COLO4_08437 Corchorus olitorius HOM05D000003 ORTHO05D000167 2.1e-09 67.0 203 26.1
QL05p053348 Quercus lobata HOM05D000003 ORTHO05D000167 2.1e-09 67.0 189 25.4
CANSAT11G0243 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-09 66.6 216 23.6
CANSAT56G3812 Cannabis sativa HOM05D000003 ORTHO05D000167 2.8e-09 66.6 203 25.6
CANSAT25G0754 Cannabis sativa HOM05D000003 ORTHO05D000004 3.6e-09 66.2 204 25.0
CANSAT78G0390 Cannabis sativa HOM05D000003 ORTHO05D000004 3.6e-09 66.2 91 31.9
CANSAT54G2882 Cannabis sativa HOM05D000003 ORTHO05D000004 4.8e-09 65.9 204 26.5
CANSAT78G2528 Cannabis sativa HOM05D000003 ORTHO05D000167 4.8e-09 65.9 193 25.9
QL11p009033 Quercus lobata HOM05D000003 ORTHO05D000004 4.8e-09 65.9 205 25.9
Atru.chr1.1692 Acer truncatum HOM05D000003 ORTHO05D000167 6.2e-09 65.5 126 34.9
CANSAT01G1633 Cannabis sativa HOM05D000003 ORTHO05D000167 6.2e-09 65.5 144 29.9
CANSAT80G2659 Cannabis sativa HOM05D000003 ORTHO05D000167 6.2e-09 65.5 202 25.7
AUR62005037 Chenopodium quinoa HOM05D000003 ORTHO05D000167 6.2e-09 65.5 148 29.1
RcHm_v2.0_Chr7g0227851 Rosa chinensis HOM05D008833 ORTHO05D000167 6.2e-09 65.5 136 32.4
Atru.chr3.2872 Acer truncatum HOM05D000003 ORTHO05D000167 8.1e-09 65.1 202 26.2
Duzib093G0877 Durio zibethinus HOM05D000003 ORTHO05D000004 8.1e-09 65.1 187 25.1
BraA07t28107Z Brassica rapa HOM05D000003 ORTHO05D001498 1.1e-08 64.7 205 26.8
CANSAT56G3406 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-08 64.7 211 22.3
FvH4_4g12942 Fragaria vesca HOM05D001338 ORTHO05D001239 1.1e-08 64.7 160 28.8
Aa31LG11G9560 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.4e-08 64.3 218 26.1
Aa31LG8G10880 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.4e-08 64.3 203 25.6
CANSAT21G1260 Cannabis sativa HOM05D000003 ORTHO05D000167 1.4e-08 64.3 177 24.9
CANSAT25G1265 Cannabis sativa HOM05D000003 ORTHO05D000167 1.4e-08 64.3 208 25.5
CiPaw.07G069100 Carya illinoinensis HOM05D000003 ORTHO05D000167 1.4e-08 64.3 169 24.9
QL05p054879 Quercus lobata HOM05D000003 ORTHO05D000126 1.4e-08 64.3 140 31.4
Atru.chr12.1232 Acer truncatum HOM05D000003 ORTHO05D000167 1.8e-08 63.9 126 29.4
Atru.chr2.2868 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-08 63.9 202 28.2
Atru.chr6.1082 Acer truncatum HOM05D000003 ORTHO05D000167 1.8e-08 63.9 128 30.5
CANSAT01G2388 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-08 63.9 211 25.1
CANSAT54G1564 Cannabis sativa HOM05D000003 ORTHO05D000167 1.8e-08 63.9 203 24.1
EL10Ac5g12187 Beta vulgaris HOM05D000003 ORTHO05D000006 2.4e-08 63.5 191 23.6
QL05p026767 Quercus lobata HOM05D000003 ORTHO05D000167 2.4e-08 63.5 130 30.0
CANSAT11G0785 Cannabis sativa HOM05D000003 ORTHO05D000167 3.1e-08 63.2 131 30.5
CANSAT21G2268 Cannabis sativa HOM05D000003 ORTHO05D000167 3.1e-08 63.2 204 26.0
AUR62038357 Chenopodium quinoa HOM05D000003 ORTHO05D000004 3.1e-08 63.2 149 27.5
Atru.chr4.3089 Acer truncatum HOM05D000003 ORTHO05D000126 5.3e-08 62.4 175 28.0
Aa31LG8G4340 Aethionema arabicum HOM05D000003 ORTHO05D001091 5.3e-08 62.4 211 25.6
Aa31sc128G60 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.9e-08 62.0 222 22.5
Aa31sc248G50 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.9e-08 62.0 222 22.5
Lj3g0003452 Lotus japonicus HOM05D000003 ORTHO05D000004 6.9e-08 62.0 215 23.7
QL05p012339 Quercus lobata HOM05D000003 ORTHO05D000167 6.9e-08 62.0 194 24.2
CANSAT11G0139 Cannabis sativa HOM05D000003 ORTHO05D000167 9.0e-08 61.6 188 26.6
CANSAT11G1435 Cannabis sativa HOM05D000003 ORTHO05D000167 9.0e-08 61.6 207 30.0
FvH4_4g07171 Fragaria vesca HOM05D008833 ORTHO05D012679 9.0e-08 61.6 160 29.4
FvH4_4g16971 Fragaria vesca HOM05D000003 ORTHO05D000004 9.0e-08 61.6 193 24.9
FvH4_4g01552 Fragaria vesca HOM05D000003 ORTHO05D006737 1.2e-07 61.2 128 29.7
TAR199G0001 Trochodendron aralioides HOM05D000003 ORTHO05D000004 1.2e-07 61.2 191 23.6
Atru.chr7.293 Acer truncatum HOM05D000003 ORTHO05D000167 1.5e-07 60.8 162 26.5
CANSAT21G2622 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-07 60.8 207 24.6
Gorai.001G187600 Gossypium raimondii HOM05D016941 ORTHO05D019244 1.5e-07 60.8 162 29.6
Atru.chr5.1598 Acer truncatum HOM05D000856 ORTHO05D000167 2.0e-07 60.5 198 26.8
QL03p051237 Quercus lobata HOM05D000003 ORTHO05D000167 2.0e-07 60.5 144 25.0
Sed0026194 Sechium edule HOM05D000003 ORTHO05D000167 2.0e-07 60.5 220 24.5
Atru.chr3.1273 Acer truncatum HOM05D000003 ORTHO05D000167 2.6e-07 60.1 206 25.7
FvH4_2g20801 Fragaria vesca HOM05D008097 ORTHO05D000167 2.6e-07 60.1 148 28.4
QL03p040433 Quercus lobata HOM05D000003 ORTHO05D000004 2.6e-07 60.1 95 30.5
Atru.chr10.527 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-07 59.7 185 24.9
Atru.chr2.1558 Acer truncatum HOM05D000003 ORTHO05D000167 3.4e-07 59.7 143 28.0
Atru.chr2.2006 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-07 59.7 195 24.6
CANSAT21G1065 Cannabis sativa HOM05D000003 ORTHO05D000167 3.4e-07 59.7 155 24.5
Sed0012627 Sechium edule HOM05D000003 ORTHO05D000004 3.4e-07 59.7 208 25.0
TWI23G0529 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.4e-07 59.7 210 23.3
COL.COLO4_35519 Corchorus olitorius HOM05D009774 ORTHO05D000167 5.8e-07 58.9 136 27.9
CANSAT11G1229 Cannabis sativa HOM05D000003 ORTHO05D000004 7.6e-07 58.5 125 29.6
CANSAT54G0106 Cannabis sativa HOM05D000003 ORTHO05D000004 7.6e-07 58.5 177 25.4
CANSAT64G0247 Cannabis sativa HOM05D000003 ORTHO05D000004 7.6e-07 58.5 203 24.6
CANSAT64G2698 Cannabis sativa HOM05D000003 ORTHO05D000167 7.6e-07 58.5 129 28.7
DCAR_029404 Daucus carota HOM05D048171 ORTHO05D045074 9.9e-07 58.2 79 41.8
TWI23G1168 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 9.9e-07 58.2 142 28.2
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 1.3e-06 57.8 196 24.0
CANSAT78G1517 Cannabis sativa HOM05D000003 ORTHO05D000167 1.7e-06 57.4 158 27.8
COL.COLO4_23207 Corchorus olitorius HOM05D009774 ORTHO05D000167 1.7e-06 57.4 143 26.6
FvH4_3g14382 Fragaria vesca HOM05D000003 ORTHO05D006737 1.7e-06 57.4 163 25.8
Atru.chr7.591 Acer truncatum HOM05D000003 ORTHO05D000004 2.2e-06 57.0 213 25.8
CANSAT11G0021 Cannabis sativa HOM05D000003 ORTHO05D000167 2.2e-06 57.0 194 21.1
CANSAT35G0956 Cannabis sativa HOM05D000003 ORTHO05D000167 2.2e-06 57.0 122 28.7
CANSAT78G1077 Cannabis sativa HOM05D000003 ORTHO05D000167 2.2e-06 57.0 156 28.8
AUR62008864 Chenopodium quinoa HOM05D000051 ORTHO05D000004 2.2e-06 57.0 192 26.0
COL.COLO4_28522 Corchorus olitorius HOM05D000003 ORTHO05D000126 2.2e-06 57.0 198 22.2
TWI75G0193 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.2e-06 57.0 210 22.9
FAN14G0257 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.8e-06 56.2 139 28.8
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 4.9e-06 55.8 208 24.5
CANSAT56G1970 Cannabis sativa HOM05D000003 ORTHO05D000167 6.4e-06 55.5 144 27.8
CANSAT01G0940 Cannabis sativa HOM05D000003 ORTHO05D000167 8.4e-06 55.1 224 29.0
CANSAT35G0158 Cannabis sativa HOM05D000003 ORTHO05D000004 8.4e-06 55.1 111 27.0
CANSAT54G0125 Cannabis sativa HOM05D000003 ORTHO05D000167 8.4e-06 55.1 147 25.2
CANSAT64G1142 Cannabis sativa HOM05D000003 ORTHO05D000167 8.4e-06 55.1 152 24.3
VMungo0647G2109 Vigna mungo HOM05D000155 ORTHO05D000022 8.4e-06 55.1 87 39.1


User provided reference genes

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