Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0637 Cannabis sativa HOM05D000786 ORTHO05D000779 1.1e-49 199.9 116 100.0
Cfa006682 Carpinus fangiana HOM05D000786 ORTHO05D000779 3.7e-10 68.6 121 38.8
Haze_04084 Corylus avellana HOM05D000786 ORTHO05D000779 8.3e-10 67.4 121 38.0
CiPaw.08G156800 Carya illinoinensis HOM05D000786 ORTHO05D000779 4.1e-09 65.1 114 40.4
CiPaw.07G027400 Carya illinoinensis HOM05D000786 ORTHO05D000779 2.0e-08 62.8 122 36.9
TAR636G3362 Trochodendron aralioides HOM05D000786 ORTHO05D000779 1.0e-07 60.5 42 57.1
PGR083G1617 Punica granatum HOM05D000786 ORTHO05D000779 1.3e-07 60.1 46 60.9
Duzib133G0956 Durio zibethinus HOM05D000786 ORTHO05D000779 2.9e-07 58.9 41 56.1
Zm00001eb396430 Zea mays HOM05D000786 ORTHO05D000779 2.9e-07 58.9 42 57.1
TWI18G0458 Tripterygium wilfordii HOM05D000786 ORTHO05D000779 3.8e-07 58.5 42 52.4
Atru.chr2.141 Acer truncatum HOM05D000786 ORTHO05D000779 5.0e-07 58.2 46 54.3
Cpa.g.sc18.2 Carica papaya HOM05D000786 ORTHO05D000779 5.0e-07 58.2 43 53.5
Manes.09G175200 Manihot esculenta HOM05D000786 ORTHO05D000779 5.0e-07 58.2 43 55.8
TPR.G1606 Trifolium pratense HOM05D000786 ORTHO05D000779 5.0e-07 58.2 46 58.7
TAR365G1099 Trochodendron aralioides HOM05D000786 ORTHO05D000779 5.0e-07 58.2 46 50.0
FAN09G3870 Fragaria x ananassa HOM05D013158 ORTHO05D000779 8.6e-07 57.4 42 54.8
QL12p028929 Quercus lobata HOM05D000786 ORTHO05D000779 8.6e-07 57.4 43 51.2
AUR62005266 Chenopodium quinoa HOM05D000786 ORTHO05D000779 1.1e-06 57.0 42 57.1
ClCG10G005480 Citrullus lanatus HOM05D000786 ORTHO05D000779 1.1e-06 57.0 40 62.5
Os07g0690200 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 1.1e-06 57.0 44 50.0
CARHR080180 Cardamine hirsuta HOM05D000786 ORTHO05D000779 1.5e-06 56.6 46 54.3
FAN14G2240 Fragaria x ananassa HOM05D013158 ORTHO05D000779 1.9e-06 56.2 41 56.1
Lalb_Chr18g0046031 Lupinus albus HOM05D000786 ORTHO05D000779 1.9e-06 56.2 42 54.8
TWI12G0435 Tripterygium wilfordii HOM05D000786 ORTHO05D000779 1.9e-06 56.2 42 52.4
TAR362G0003 Trochodendron aralioides HOM05D000786 ORTHO05D000779 1.9e-06 56.2 42 47.6
Zm00001eb014190 Zea mays HOM05D000786 ORTHO05D000779 1.9e-06 56.2 42 52.4
THA.LOC104818741 Tarenaya hassleriana HOM05D000786 ORTHO05D000779 2.5e-06 55.8 46 52.2
MD12G1207900 Malus domestica HOM05D000786 ORTHO05D000779 3.3e-06 55.5 128 35.9
Medtr7g109290 Medicago truncatula HOM05D000786 ORTHO05D000779 3.3e-06 55.5 41 53.7
MELO3C025388.2 Cucumis melo HOM05D000786 ORTHO05D000779 4.2e-06 55.1 41 56.1
SGA_v2.0_scaffold163G38016 Striga asiatica HOM05D000786 ORTHO05D000779 4.2e-06 55.1 42 54.8
Zm00001eb063640 Zea mays HOM05D000786 ORTHO05D000779 4.2e-06 55.1 42 52.4
CSS0023598 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 5.5e-06 54.7 42 50.0
ClCG03G017660 Citrullus lanatus HOM05D032089 ORTHO05D000779 5.5e-06 54.7 42 52.4
CsaV3_1G040610 Cucumis sativus L. HOM05D000786 ORTHO05D000779 5.5e-06 54.7 42 50.0
CsaV3_3G005210 Cucumis sativus L. HOM05D000786 ORTHO05D000779 5.5e-06 54.7 41 56.1
Duzib138G1722 Durio zibethinus HOM05D000786 ORTHO05D000779 5.5e-06 54.7 41 51.2
Manes.01G225400 Manihot esculenta HOM05D000786 ORTHO05D000779 5.5e-06 54.7 41 51.2
Os03g0302500 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D000779 5.5e-06 54.7 42 52.4
Prupe.6G315400 Prunus persica HOM05D000786 ORTHO05D000779 5.5e-06 54.7 44 54.5
SEGI_03186 Sequoiadendron giganteum HOM05D000786 ORTHO05D000779 5.5e-06 54.7 42 54.8
HPP92_025190 Vanilla planifolia HOM05D000786 ORTHO05D000779 5.5e-06 54.7 42 50.0
EL10Ac4g09862 Beta vulgaris HOM05D000786 ORTHO05D000779 7.2e-06 54.3 42 54.8
BcaC05g29785 Brassica carinata HOM05D000786 ORTHO05D000779 7.2e-06 54.3 46 50.0
BcaC09g47844 Brassica carinata HOM05D000786 ORTHO05D000779 7.2e-06 54.3 46 54.3
BolC1t05676H Brassica oleracea HOM05D000786 ORTHO05D000779 7.2e-06 54.3 46 54.3
BraA01t04489Z Brassica rapa HOM05D000786 ORTHO05D000779 7.2e-06 54.3 46 54.3
CAN.G668.24 Capsicum annuum HOM05D000786 ORTHO05D000779 7.2e-06 54.3 42 52.4
Ciclev10022952m.g Citrus clementina HOM05D000786 ORTHO05D000779 7.2e-06 54.3 41 51.2
SHI00507 Sapria himalayana HOM05D000786 ORTHO05D000779 7.2e-06 54.3 42 47.6
Solyc09g075650.3 Solanum lycopersicum HOM05D000786 ORTHO05D000779 7.2e-06 54.3 42 52.4
Sopen09g030450 Solanum pennellii HOM05D000786 ORTHO05D000779 7.2e-06 54.3 42 52.4
PGSC0003DMG400031801 Solanum tuberosum HOM05D000786 ORTHO05D000779 7.2e-06 54.3 42 52.4
Aqoxy2G02520 Aquilegia oxysepala HOM05D000786 ORTHO05D000779 9.5e-06 53.9 41 51.2
AT3G05725 Arabidopsis thaliana HOM05D000786 ORTHO05D000779 9.5e-06 53.9 46 50.0
Peaxi162Scf00001g00286 Petunia axillaris HOM05D000786 ORTHO05D000779 9.5e-06 53.9 42 50.0
Prupe.1G409100 Prunus persica HOM05D000786 ORTHO05D000779 9.5e-06 53.9 41 48.8
Sp3g04610 Schrenkiella parvula HOM05D000786 ORTHO05D000779 9.5e-06 53.9 46 52.2
Zm00001eb285950 Zea mays HOM05D000786 ORTHO05D000779 9.5e-06 53.9 41 53.7


User provided reference genes

Program Settings