Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 7.4e-294 1013.1 486 100.0
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 5.5e-241 837.4 486 81.5
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 4.7e-240 834.3 486 80.9
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 6.8e-239 830.5 486 81.1
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 2.0e-238 828.9 486 80.9
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.6e-238 828.6 486 80.9
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 9.8e-238 826.6 486 80.5
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 2.2e-237 825.5 487 81.1
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 3.7e-237 824.7 486 80.5
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 3.7e-237 824.7 490 80.4
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.1e-236 821.2 486 80.0
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 1.6e-235 819.3 486 79.6
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 2.7e-235 818.5 488 80.1
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 3.5e-235 818.1 486 80.0
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.0e-234 816.6 486 80.0
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 1.3e-234 816.2 486 80.2
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 3.8e-234 814.7 487 80.7
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 3.8e-234 814.7 489 78.3
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 6.5e-234 813.9 486 79.6
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 6.5e-234 813.9 487 80.5
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 6.5e-234 813.9 486 80.0
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 6.5e-234 813.9 486 78.0
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 1.5e-233 812.8 486 79.4
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 2.5e-233 812.0 488 78.9
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.2e-232 809.7 497 75.9
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 2.1e-232 808.9 486 78.4
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 2.1e-232 808.9 486 78.8
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 2.7e-232 808.5 486 78.8
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 3.6e-232 808.1 497 75.7
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 3.6e-232 808.1 489 78.7
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 6.1e-232 807.4 492 77.6
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 8.0e-232 807.0 486 79.0
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 8.0e-232 807.0 486 78.2
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 1.0e-231 806.6 487 77.4
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.4e-231 806.2 488 78.7
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.3e-231 805.4 487 79.1
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 5.2e-231 804.3 486 79.0
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 8.8e-231 803.5 492 77.2
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 1.2e-230 803.1 486 77.6
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 2.0e-230 802.4 488 77.3
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 2.6e-230 802.0 492 75.8
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 3.4e-230 801.6 486 77.2
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 5.7e-230 800.8 486 78.6
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 7.5e-230 800.4 501 77.2
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 9.8e-230 800.0 486 77.2
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 2.8e-229 798.5 488 77.9
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 4.9e-229 797.7 511 75.5
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 6.3e-229 797.3 486 77.6
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 1.4e-228 796.2 489 77.5
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 3.5e-227 791.6 486 77.0
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 1.3e-226 789.6 522 72.8
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 2.9e-226 788.5 487 76.2
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 1.5e-225 786.2 486 75.5
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 2.8e-224 781.9 488 78.3
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 4.7e-224 781.2 486 75.5
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 8.0e-224 780.4 486 77.6
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 1.0e-223 780.0 486 76.7
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 1.8e-223 779.2 488 75.4
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.3e-223 778.9 466 78.8
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 3.0e-223 778.5 487 77.6
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 4.0e-223 778.1 486 76.3
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 4.0e-223 778.1 463 79.7
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 5.2e-223 777.7 492 74.4
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 8.9e-223 776.9 581 66.6
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 9.8e-222 773.5 486 76.1
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 4.9e-221 771.2 474 75.9
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 8.3e-221 770.4 487 74.3
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 2.4e-220 768.8 492 74.4
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 4.1e-220 768.1 486 74.7
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 1.6e-219 766.1 486 73.7
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 3.5e-219 765.0 573 65.8
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 7.8e-219 763.8 492 74.0
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 1.7e-218 762.7 486 74.9
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.0e-218 761.9 460 79.8
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 8.6e-218 760.4 488 72.7
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 1.5e-217 759.6 570 67.2
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 9.5e-217 756.9 491 73.1
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 1.8e-215 752.7 488 74.4
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 2.3e-215 752.3 486 74.5
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 3.4e-214 748.4 489 72.2
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 4.4e-214 748.0 486 74.7
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 4.4e-214 748.0 486 74.1
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 4.9e-213 744.6 486 73.3
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 1.4e-212 743.0 486 73.0
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 1.4e-212 743.0 486 73.0
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 9.2e-212 740.3 486 72.8
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 9.2e-212 740.3 486 72.8
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 3.5e-211 738.4 486 73.5
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 6.0e-211 737.6 486 73.3
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 2.3e-210 735.7 486 72.8
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 3.0e-210 735.3 486 73.5
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 1.1e-209 733.4 486 72.4
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 1.9e-209 732.6 486 72.4
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 2.1e-208 729.2 486 72.0
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 1.3e-205 719.9 510 69.0
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 4.1e-204 714.9 486 72.0
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 2.7e-203 712.2 543 65.2
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 1.3e-202 709.9 412 79.9
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 2.3e-202 709.1 575 62.1
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 6.2e-200 701.0 412 80.1
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 1.1e-199 700.3 486 69.1
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.8e-199 699.5 600 59.5
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 1.1e-196 690.3 495 68.9
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 4.1e-196 688.3 454 74.0
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 3.0e-194 682.2 510 67.1
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 3.9e-186 655.2 433 71.8
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 7.9e-179 630.9 490 62.4
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 1.3e-178 630.2 412 73.3
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 1.3e-178 630.2 498 59.8
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 3.0e-178 629.0 491 61.1
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.5e-177 625.9 376 77.9
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 6.2e-176 621.3 361 80.9
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 3.5e-171 605.5 374 74.3
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 6.7e-170 601.3 374 74.1
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 6.5e-165 584.7 343 79.9
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.5e-163 578.9 328 82.9
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 6.0e-163 578.2 328 82.9
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 1.3e-160 570.5 531 54.0
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 1.3e-160 570.5 328 81.4
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 3.4e-150 535.8 328 77.7
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.5e-145 520.4 418 63.4
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 2.0e-145 520.0 334 76.0
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 7.4e-145 518.1 320 77.8
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 6.5e-141 505.0 362 69.3
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 7.9e-139 498.0 301 78.7
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 7.5e-129 464.9 328 71.0
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.0e-106 391.3 222 82.4
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 1.7e-104 384.0 450 44.4
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 1.2e-102 377.9 437 46.7
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 7.8e-94 348.6 211 78.2
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 2.3e-90 337.0 437 42.6
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 5.2e-90 335.9 233 68.7
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.4e-79 301.2 187 77.0
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.1e-79 299.7 159 87.4
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.1e-79 299.7 159 87.4
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.9e-76 290.8 159 86.2
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 1.9e-68 264.2 138 84.8
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.9e-55 221.1 437 33.9
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 4.6e-46 189.9 106 84.0
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.6e-46 189.9 106 84.9
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.6e-43 181.4 94 90.4
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.8e-43 179.9 93 91.4
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 1.6e-38 164.9 144 54.9
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 7.9e-38 162.5 119 69.7
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.5e-36 157.5 91 79.1
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 3.6e-22 110.5 77 70.1
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.5e-20 105.1 70 74.3
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 2.0e-20 104.8 87 56.3
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 7.4e-20 102.8 66 72.7
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 8.2e-19 99.4 65 69.2
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 5.5e-15 86.7 69 60.9
MCO05G371 Micromonas commoda HOM05D004862 ORTHO05D267887 2.2e-08 64.7 125 36.8
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 7.2e-07 59.7 35 74.3


User provided reference genes

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