Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 3.1e-194 681.8 384 100.0
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 2.2e-99 366.7 390 58.2
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 2.4e-98 363.2 399 59.9
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 5.4e-98 362.1 398 60.6
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.0e-97 360.1 390 60.5
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 2.7e-97 359.8 391 60.6
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 5.9e-97 358.6 390 60.3
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 7.8e-97 358.2 390 60.3
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.0e-96 356.3 390 60.0
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.9e-95 353.6 391 59.6
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 1.6e-89 334.0 390 57.4
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 2.3e-88 330.1 391 58.6
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 3.0e-88 329.7 387 56.8
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 3.0e-88 329.7 387 56.8
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 5.0e-88 328.9 383 56.7
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 1.1e-85 321.2 390 57.2
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 1.1e-85 321.2 394 53.6
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 1.8e-85 320.5 390 56.9
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 5.2e-85 318.9 389 53.7
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 5.2e-85 318.9 391 49.9
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.0e-84 317.0 384 53.9
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 1.3e-83 314.3 402 54.2
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 1.3e-83 314.3 384 55.5
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 3.7e-83 312.8 390 54.9
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 1.4e-82 310.8 402 55.7
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 7.1e-82 308.5 387 53.0
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 1.6e-81 307.4 405 50.6
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 3.0e-80 303.1 395 52.4
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 5.1e-80 302.4 392 49.7
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 6.6e-80 302.0 388 53.6
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 1.1e-79 301.2 393 52.2
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 2.5e-79 300.1 389 51.9
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.5e-79 300.1 393 50.4
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 9.5e-79 298.1 390 53.6
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 3.6e-78 296.2 391 52.2
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 6.2e-78 295.4 400 55.2
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 8.1e-78 295.0 394 50.3
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 1.4e-77 294.3 390 54.9
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 4.0e-77 292.7 390 51.8
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 4.0e-77 292.7 391 53.5
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 5.2e-77 292.4 389 55.8
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 8.9e-77 291.6 396 54.3
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 2.6e-76 290.0 394 51.5
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.7e-75 287.3 398 53.8
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 8.4e-75 285.0 341 58.7
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 8.4e-75 285.0 393 53.4
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.4e-74 283.5 395 51.9
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 4.1e-74 282.7 369 49.6
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 7.1e-74 282.0 364 57.4
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 7.1e-74 282.0 389 53.0
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 7.8e-73 278.5 395 48.1
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 7.8e-73 278.5 395 48.1
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 2.3e-72 276.9 388 54.1
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 8.6e-72 275.0 364 54.7
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 5.6e-71 272.3 366 51.6
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 5.6e-71 272.3 389 50.4
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 6.2e-70 268.9 398 50.3
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 1.4e-69 267.7 395 48.1
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 1.4e-69 267.7 377 48.5
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 8.9e-69 265.0 385 49.6
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.8e-67 259.6 395 49.9
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 4.9e-67 259.2 397 44.8
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 1.1e-66 258.1 409 48.4
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 4.2e-66 256.1 387 48.3
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 2.3e-64 250.4 392 51.0
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 5.1e-64 249.2 392 50.3
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 8.7e-64 248.4 407 45.0
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 1.5e-63 247.7 389 50.4
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 1.5e-63 247.7 409 44.7
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 4.8e-62 242.7 393 46.6
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.8e-61 240.7 413 45.5
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 2.0e-60 237.3 395 45.8
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 5.8e-60 235.7 394 43.4
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.3e-59 234.6 346 51.7
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 8.4e-59 231.9 346 51.4
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.2e-57 228.0 399 43.9
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.6e-57 227.6 346 52.0
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 6.0e-57 225.7 404 45.8
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 7.9e-57 225.3 409 43.8
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 8.7e-56 221.9 412 45.9
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 1.1e-55 221.5 388 43.6
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 1.9e-55 220.7 407 43.5
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 2.5e-55 220.3 393 44.8
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.3e-54 218.0 407 43.7
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 2.8e-54 216.9 389 39.1
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 3.1e-53 213.4 386 45.6
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 4.0e-53 213.0 388 47.9
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 5.3e-53 212.6 384 41.7
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 6.9e-53 212.2 385 46.2
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 2.6e-52 210.3 400 48.0
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.3e-51 208.0 266 48.1
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 1.7e-51 207.6 386 37.6
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 1.7e-51 207.6 386 37.6
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 4.2e-50 203.0 396 45.2
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 7.1e-50 202.2 337 50.1
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.6e-49 201.1 397 43.6
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.6e-49 201.1 397 43.6
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 6.0e-49 199.1 394 38.8
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 1.2e-44 184.9 386 40.9
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 7.6e-44 182.2 390 39.2
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 1.7e-43 181.0 393 37.2
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.1e-42 178.3 394 42.6
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 5.5e-42 176.0 323 47.4
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 6.0e-41 172.6 390 40.3
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.1e-39 168.3 387 37.7
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 5.7e-39 166.0 386 42.7
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 5.7e-39 166.0 386 43.0
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 9.6e-39 165.2 391 41.9
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.1e-37 161.8 327 38.5
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 2.4e-37 160.6 353 41.9
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 4.1e-37 159.8 391 36.8
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 5.3e-37 159.5 393 36.6
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.5e-36 157.9 330 45.8
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 3.4e-36 156.8 326 42.3
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.3e-35 154.8 389 37.3
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 5.0e-35 152.9 385 32.2
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 1.1e-34 151.8 368 40.2
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 1.9e-34 151.0 327 37.3
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 4.2e-34 149.8 392 36.2
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 4.2e-34 149.8 387 35.4
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.1e-33 147.5 162 67.9
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 1.8e-32 144.4 320 40.9
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 6.7e-32 142.5 390 35.1
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 4.3e-31 139.8 222 50.5
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 6.3e-30 136.0 349 35.8
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 4.1e-29 133.3 389 33.2
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 2.6e-28 130.6 318 34.3
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.0e-27 128.6 201 44.3
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 6.5e-27 125.9 329 36.2
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 1.6e-25 121.3 403 35.2
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 4.6e-25 119.8 313 37.7
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 1.8e-24 117.9 301 43.9
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 2.3e-24 117.5 312 37.2
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 3.0e-24 117.1 315 35.9
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 2.0e-23 114.4 226 49.6
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 2.6e-23 114.0 311 35.0
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 4.4e-23 113.2 313 35.1
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 5.7e-23 112.8 311 35.7
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.1e-21 108.6 167 53.3
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 4.1e-21 106.7 378 29.9
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 9.1e-21 105.5 309 34.3
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 1.2e-20 105.1 313 34.2
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 1.2e-20 105.1 313 34.2
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 2.0e-20 104.4 381 33.6
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 2.2e-19 100.9 313 33.5
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 4.4e-15 86.7 385 28.8
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 5.7e-15 86.3 303 31.4
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 3.7e-14 83.6 315 27.3
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 4.1e-13 80.1 312 32.1
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 4.5e-12 76.6 312 31.7
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 8.5e-11 72.4 307 31.9
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 1.1e-10 72.0 307 30.9
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.5e-10 71.6 113 41.6
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 2.7e-09 67.4 307 30.6
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 1.3e-06 58.5 379 29.3
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 4.8e-06 56.6 305 29.2
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 4.8e-06 56.6 305 29.2


User provided reference genes

Program Settings